Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011023.1 Kokia drynarioides strain JFW-HI SEQ_125994, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3657
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.31

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:1332 original size:14 final size:15

Alignment explanation


    Indices: 1315--1354  Score: 55
    Period size: 15  Copynumber: 2.7  Consensus size: 15

       1305 GATGGAGATA

                          *
       1315 AAAAC-TAAACCCTG
          1 AAAACATAAACCCTC

                  *        
       1329 AAAACAAAAACCCTC
          1 AAAACATAAACCCTC

                       
       1344 AAAACATAAAC
          1 AAAACATAAAC

       1355 ACTAAATTCT


Statistics
Matches: 22,  Mismatches: 3, Indels: 1
        0.85            0.12        0.04

Matches are distributed among these distances:
  14    5  0.23
  15   17  0.77

ACGTcount: A:0.60, C:0.28, G:0.03, T:0.10


Consensus pattern (15 bp):   
AAAACATAAACCCTC

Done.