Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011028.1 Kokia drynarioides strain JFW-HI SEQ_125999, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5933
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.31


Found at i:1833 original size:18 final size:19

Alignment explanation


    Indices: 1799--1839  Score: 66
    Period size: 18  Copynumber: 2.2  Consensus size: 19

       1789 ACTAATTTGA

                               
       1799 GTCAAAATAGAAAAATAAG
          1 GTCAAAATAGAAAAATAAG

                    *          
       1818 GTCAAAATTG-AAAATAAG
          1 GTCAAAATAGAAAAATAAG

                
       1836 GTCA
          1 GTCA

       1840 CATGACCGTG


Statistics
Matches: 21,  Mismatches: 1, Indels: 1
        0.91            0.04        0.04

Matches are distributed among these distances:
  18   12  0.57
  19    9  0.43

ACGTcount: A:0.56, C:0.07, G:0.17, T:0.20


Consensus pattern (19 bp):   
GTCAAAATAGAAAAATAAG
Done.