Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001103.1 Kokia drynarioides strain JFW-HI SEQ_112379, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2504
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32


Found at i:1051 original size:14 final size:13

Alignment explanation


    Indices: 1013--1052  Score: 53
    Period size: 14  Copynumber: 2.8  Consensus size: 13

       1003 ATAAATAAAT

                          
       1013 AAATAGAAAAATTA
          1 AAATA-AAAAATTA

                          
       1027 AAATAATAAAATTA
          1 AAATAA-AAAATTA

                        
       1041 AAATTAAAAAAT
          1 AAA-TAAAAAAT

       1053 GGGTTGCCTC


Statistics
Matches: 24,  Mismatches: 0, Indels: 4
        0.86            0.00        0.14

Matches are distributed among these distances:
  13    1  0.04
  14   20  0.83
  15    3  0.12

ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25


Consensus pattern (13 bp):   
AAATAAAAAATTA
Done.