Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011035.1 Kokia drynarioides strain JFW-HI SEQ_126006, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5766
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Found at i:1080 original size:216 final size:215
Alignment explanation
Indices: 1--5766 Score: 5665
Period size: 216 Copynumber: 26.8 Consensus size: 215
* * * * * *
1 ATTCCTTCGAGCAA-TTTTCTGAACATTCAATTCTTGAGAAATGGCAGCATTTGGTCTAAAGAGT
1 ATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
* * * * *
65 TTGTCATTTT-AAAAACAAGTATTGGTCTTTGAATCAAAAACATATTTACGTGAGAATTGTTT-T
65 TTGTCATTTTGTAAAA-AGGTTTTGGTCTTTGAAT-TAAAACTTATTTACGTGAGAATTGTTTCT
** *
128 -TCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
128 CTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
*
192 CCTTACAA-TATTCAAGACGATAC
193 CCTTA-AAGTATTCAAGACGATCC
* * * * * * *
215 ATTCCTTCTAGCAACTTTCTT--AACATTCTATGCTCGAAAAATCACATCGTTT-TTCTAAATTG
1 ATTCCTTCGAGCAA-TTT-TTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG
* * * *
277 TATGACATTTTGTAAAACAAGTTTT-GTCTTTAAATTACAAACTTATTTACGTGAGAATTGTTTG
64 TTTGTCATTTTGTAAAA-AGGTTTTGGTCTTTGAATTA-AAACTTATTTACGTGAGAATTG-TT-
* * *
341 TCTCTCTTTGTTCTTGGATGAAC-TTCTAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTC
125 TCTCTCTTGGTTCTTGGATGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
*
405 GGTTCCTTAAAGTTTTCAAGACGATCC
189 GGTTCCTTAAAGTATTCAAGACGATCC
* * * * * *
432 ATTCCTTTGAGGAATTTTT-TAACATTCCATTCTCGAGAATTCGCATCATTTAGTCTAAATAGTT
1 ATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTT
* * * * ** * * ** * * *
496 TTTAATTTTGT-AAACGATTTTTTATCATTAAAACAAGAACATATTTTC--CAG-A-TGATTT-T
66 TGTCATTTTGTAAAAAG-GTTTTGGTCTTTGAATTAA-AACTTATTTACGTGAGAATTG-TTTCT
* * * * *
555 TTCTTGGCTGTTGGATGAAC-TTCTGAACTTTTCAAACTTTTACGAGTTCTTTTATAAGTT-GGT
128 CTCTTGGTTCTTGGATGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
** *
618 TCCTTGCAGTATTCAAGATGATCC
192 TCCTTAAAGTATTCAAGACGATCC
* * * *
642 ATTCCATCAAGCAA-TTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT
1 ATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG-
* * ** *
706 TTTTTCATTGTGTAAAAAACTTTTGGTCTTTGAAATGAAAACTTATTTACGTGAGAATTGTTTCT
64 TTTGTCATTTTGTAAAAAGGTTTTGGTCTTTG-AATTAAAACTTATTTACGTGAGAATTGTTTCT
* * * * * * *
771 CTTTTGGTTATTGGACGAAC-TTCTGAACTTATCAAATTTTTACGAGTTCTTTTATAATTTCAGT
128 CTCTTGGTTCTTGGATGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* *
835 TCCATAAAGCATTCAAGACGATCC
192 TCCTTAAAGTATTCAAGACGATCC
* *
859 ATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTT
1 ATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTT
* * * * * * *
924 TGTCATTTTGTTAAAAGGTCTCGTTGTTTGAATTAAAAGCTTATTTATGTGAGAATTCTTTCTCT
66 TGTCATTTTGTAAAAAGGTTTTGGTCTTTGAATTAAAA-CTTATTTACGTGAGAATTGTTTCTCT
* * * * * *
989 CTTGGTTCGTGGATGAACTTTCGAACTAGTTAAACTTTTACGAGTTCTTTCATATCTTTGGTTCC
130 CTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
1054 TTAAAGTATTCAAGACGATCC
195 TTAAAGTATTCAAGACGATCC
* * * * *
1075 ATTCCTTCGAGCAATTTTTTGAACATTCAATTCTTGAGAAAT-GACAGT-ATTTGGTCTAAAGAG
1 ATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCG-CA-TCATTTGGTCTAAATAG
* * *
1138 TTTGTCATTTT-AAAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTG-TT-
64 TTTGTCATTTTGTAAAA-AGGTTTTGGTCTTTGAAT-TAAAACTTATTTACGTGAGAATTGTTTC
* **
1200 TCGCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
127 TCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* *
1265 TCCTTACAGTATTCAAGACGATAC
192 TCCTTAAAGTATTCAAGACGATCC
* * * * * *
1289 ATTCCTTCGATCAACTTTCTT--AACATTCTAAGCTCGAAAAATCGCATCATTT-TTCTAAATTG
1 ATTCCTTCGAGCAA-TTT-TTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG
* *
1351 TTTGTCATTTTGTAAACAA-GTTTT-GTCTTTAAATTAAAAACTTATTTACGTGAGAATTATTTC
64 TTTGTCATTTTGTAAA-AAGGTTTTGGTCTTTGAATT-AAAACTTATTTACGTGAGAATT-GTT-
* * * * * *
1414 TCTCTCTTTGTTCTTGGATGAACTTCCAAACTTTTCAAACCTTTACGAGTTCTTTTATAACTCCG
125 TCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
*
1479 GTTCCTTAAATTATTCAAGAAC-ATCC
190 GTTCCTTAAAGTATTCAAG-ACGATCC
* * * * *
1505 ATTCCTTTC-AG-AAATTTT-GAACATTCCATTCTCGGGCAATCGCATCATTTAGTCTAAATAGT
1 ATTCC-TTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
* * * * ** * *
1567 TTTTCGTTTTGTAAACAAGTTTTTGGTCTTTAAAGCGAAAACTTATTAACGTGAAAATTG-TT-T
65 TTGTCATTTTGTAAA-AAGGTTTTGGTCTTTGAA-TTAAAACTTATTTACGTGAGAATTGTTTCT
* * * * *
1630 CTCTTGGCTGTTGGATGAAC-TTCTGAACTTTTTAAACTTTTACTAGTTCTTTTATAACTT-GGT
128 CTCTTGGTTCTTGGATGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
*
1693 TCCTTACAA-TATTCAAAGATGATCC
192 TCCTTA-AAGTATTC-AAGACGATCC
* * *
1718 ATTCCTTCGAGCTA-TTTTCTGAACATTCCATGCTCG-GAAAATCGCATAATTTTGTCTAAATAG
1 ATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAG-AAATCGCATCATTTGGTCTAAATAG
* * * *
1781 TTTGTCATTTTGTGAACAA-CTTTTGGTCTTTGAACTAAATACTTATTTACGCGAGAATTGTTTC
64 TTTGTCATTTTGT-AAAAAGGTTTTGGTCTTTGAATTAAA-ACTTATTTACGTGAGAATTGTTTC
* * * * * * *
1845 TCTTTTAGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAATTTCAGT
127 TCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* * *
1910 TCCATAAAGCATTCAAGACGATGC
192 TCCTTAAAGTATTCAAGACGATCC
* * * * * * *
1934 AATCCTTCGAGCAATTTTTTGAAGATTCCATGCTCTAAAAATGGCATAATTTGGTCTAAATAGTT
1 ATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTT
* * *
1999 TGTCATTTTGTAGAAAGGTTTTGTTGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
66 TGTCATTTTGTAAAAAGGTTTTGGTCTTTGAATT-AAAACTTATTTACGTGAGAATTGTTTCTCT
* * *
2064 CTTGGTTCTTGGATGAACTTCCGAACTAGTCAAACTTTTACGAGTT-TTTTCATATCTTCGGTTC
130 CTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT-ATAACTTCGGTTC
*
2128 CTTAAAGTATTCAAGATGATCC
194 CTTAAAGTATTCAAGACGATCC
* * * * * * *
2150 ATTCCTTCGAGCAA-TTTTCTGAACGTTCGATTCTAGAGAAATAGCAGCATTTGGTCTAAAGAGT
1 ATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
** *
2214 TTGTCATTTTG-AAAACAATTTTTGGTCTTTGAATCAGAAACTTATTTACGTGAGAATTG-TT-T
65 TTGTCATTTTGTAAAA-AGGTTTTGGTCTTTGAATTA-AAACTTATTTACGTGAGAATTGTTTCT
*
2276 CTCTTGGTTCTTGGACGAAC-TTCAGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
128 CTCTTGGTTCTTGGATGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* *
2340 TCCTTACAGGTTCCTTACAGTATTCAAGACAATAC
192 TCCTT--A--------A-AGTATTCAAGACGATCC
* * * * * * *
2375 ATTCCTTCTATCAACTTTCTT--AACATTCTATGCTTGAAAAATCGCATCATTT-TTCTAAATTG
1 ATTCCTTCGAGCAA-TTT-TTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG
* *
2437 TTTGTCATTTTGTAAACAA-GTTTT-GTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTC
64 TTTGTCATTTTGTAAA-AAGGTTTTGGTCTTTGAATT-AAAACTTATTTACGTGAGAATTG-TT-
** * *
2500 TCTCTCTTTTTTCTTGGATGAAC-TTCTAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTC
125 TCTCTCTTGGTTCTTGGATGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
*
2564 GGTTCCTTAAATTATTCAAGACGATCC
189 GGTTCCTTAAAGTATTCAAGACGATCC
* * * * *
2591 ATTCCTTTGAGGAATTTTT-AAACATTTCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTT
1 ATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTT
* * * *
2655 TGTCATTTTGTTAAAAGGTTTCGTTGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
66 TGTCATTTTGTAAAAAGGTTTTGGTCTTTGAATT-AAAACTTATTTACGTGAGAATTGTTTCTCT
* * * *
2720 CTTGGTTCTTGGACGAACTTCCGAACTAGTCAAACTTTTACGAGTT-TTTTCATATCTTCGGTTC
130 CTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT-ATAACTTCGGTTC
2784 CTTAAAGTATTCAAGACGATCC
194 CTTAAAGTATTCAAGACGATCC
* * ** * * * * *
2806 ATTCCTTCGAGCAATTTTCCGAACGTTTGATTCTTGAGAAATAGCAGCATTTGGTCTAAAGAGTT
1 ATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTT
* *
2871 TGTCATTTTGATAACAA-GTTTTGGTCTTTGAATCAGAAACTTATTTACGTGAGAATTG-TT-TC
66 TGTCATTTTG-TAAAAAGGTTTTGGTCTTTGAATTA-AAACTTATTTACGTGAGAATTGTTTCTC
* * * *
2933 GCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTC
129 TCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* *
2998 CTTACAGTATTCAAGACGATAC
194 CTTAAAGTATTCAAGACGATCC
* * * * * *
3020 ATTCCTTCTAGCAACTTTCTT--AACATTCTATGCTTGAAAAATCGCATCAATTT--TCAAAATT
1 ATTCCTTCGAGCAA-TTT-TTCGAACATTCCATGCTCGAGAAATCGCATC-ATTTGGTCTAAATA
* * * *
3081 GTTTGTTATTTTGTAAACAA-GTTTTTGTCTTTAAATTTAAAACTTATTTACATGAGAATTGTTT
63 GTTTGTCATTTTGTAAA-AAGGTTTTGGTCTTTGAA-TTAAAACTTATTTACGTGAGAATTG-TT
* * *
3145 CTCTCTCTTCGTTCTTGGATGAAC-TTCTAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTT
125 -TCTCTCTTGGTTCTTGGATGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
*
3209 CGGTTCCTTAAAGTATTCAAGATGATCC
188 CGGTTCCTTAAAGTATTCAAGACGATCC
* * * *
3237 ATTCCTTTGAGGAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATGTGGTCTAAATAGTT
1 ATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTT
* * * *
3302 TGTCATTTTGTTAAAAGGTTTCGTTGTTTGAATTAAAAGCTTATTTACGTGAGAATTGTTTCTCT
66 TGTCATTTTGTAAAAAGGTTTTGGTCTTTGAATTAAAA-CTTATTTACGTGAGAATTGTTTCTCT
* * * * * * * *
3367 CTTGATTTTTGGATGAGCGTTCGAACTAGTCAAACTTTTACGAGTTCTATCATATCTTCGGTTCC
130 CTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
3432 TTAAAGTATTCAAGACGATCC
195 TTAAAGTATTCAAGACGATCC
* ** * * * * * * * *
3453 ATTTCTAAGAGTAA-TTTTCTAAACATTCAATTCTTGAGAAATGGCAGCATTTGGTCTAAAGAGT
1 ATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
* * * * *
3517 TTGTCATTTT-AAAAACAAGTTTTGGTCTTTGAATCAGAAACTTAATTACGTCAGAATTG-TT-T
65 TTGTCATTTTGTAAAA-AGGTTTTGGTCTTTGAATTA-AAACTTATTTACGTGAGAATTGTTTCT
* ** **
3579 CGCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAAGTT
128 CTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* *
3644 CC-TAGCAGTATTCAAGACGATAC
193 CCTTA-AAGTATTCAAGACGATCC
* * * * * * *
3667 ATTCCTTCCAGCAACTTTCTT--AACTTTCTATGCTCGAAAAATCGCATCATTT-TTCAAAATTG
1 ATTCCTTCGAGCAA-TTT-TTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG
* *
3729 TTTG-CATTTTGTAAACAA-GTTTT-GTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTC
64 TTTGTCATTTTGTAAA-AAGGTTTTGGTCTTTGAATT-AAAACTTATTTACGTGAGAATTG-TT-
* * * *
3791 TCTCTCTTTGTTCTTGGATGAAC-TTCTAAACTTTTCAAACTTTTACGAGTTCATTTATAACTTC
125 TCTCTCTTGGTTCTTGGATGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
* *
3855 GGCTCCTAAAAGTATTCAAGACGATCC
189 GGTTCCTTAAAGTATTCAAGACGATCC
* * * * * * *
3882 ATTCCTTTGAGGAATTTTT-TAACATTCCATTCTCGAGAATTCGCTTCATTTAGTCTAAATAGTT
1 ATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTT
* * * * * * ** * * * *
3946 TTTAATTTTGT-AAACGAGTTTTGATCATTAAAACAAGAACATATTTTCCTGAGGA-T-TTT-T-
66 TGTCATTTTGTAAAAAG-GTTTTGGTCTTTGAATTAA-AACTTATTTACGTGAGAATTGTTTCTC
* * * * *
4006 TCTTGGCTGTTGGATGAAC-TTCTGAACTTTTTAAACTTTTACCAGTTCTTTTATAACTT-GGTT
129 TCTTGGTTCTTGGATGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* * *
4069 CCCTACAA-TATTCAAGATGACCC
193 CCTTA-AAGTATTCAAGACGATCC
* * * *
4092 AATCCTTCGAGCTA-TTTTCTGAACATTCCATGCTCGAGAAATCGCATAATTTTGTCTAAATAGT
1 ATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
* * ** *
4156 TCGTCATTTTGTGAACAA-CATTTGGTCTTTGAATTAAATACTTATTTACGCGAGAATTGTTTCT
65 TTGTCATTTTGT-AAAAAGGTTTTGGTCTTTGAATTAAA-ACTTATTTACGTGAGAATTGTTTCT
* * * * *
4220 CTTTTAGTTCTTGGACGAAC-TTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAATTTCAGT
128 CTCTTGGTTCTTGGATGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* *
4284 TCCATAAAGCATTCAAGACGATCC
192 TCCTTAAAGTATTCAAGACGATCC
* * *
4308 TTTCCTTCAAGCAATTTTTCGAACATTCCATGCTCGAAAAATCGCATCATTTGGTCTAAATAGTT
1 ATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTT
* *
4373 TGTCATTTTGTAAAAAGGTTTTGTTTTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
66 TGTCATTTTGTAAAAAGGTTTTGGTCTTTGAATT-AAAACTTATTTACGTGAGAATTG-TT-TCT
* * * *
4438 CTCTTTGTTCTTGGATGAAC-TTCTAAACTTTTCAAACATTTACGAGTTCTTTTATAACTTCGGT
128 CTCTTGGTTCTTGGATGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
4502 TCCTTAAAGTATTCAAGACGATCC
192 TCCTTAAAGTATTCAAGACGATCC
* * *
4526 ATTCCTTTGAGGAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTC-AGAATAGT
1 ATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTA-AATAGT
* * * * * *
4590 TTGTCATTTTGTTAAAAGGTTTCGTTGTTTAAATTAAAAGCTTATTTACGTGAGAATTATTTCTC
65 TTGTCATTTTGTAAAAAGGTTTTGGTCTTTGAATTAAAA-CTTATTTACGTGAGAATTGTTTCTC
* * * * *
4655 TCTTGGTTCTTGGACGAACTTTCGAACTAGTCAAGCTTTTACGAGTTCTTTCATATCTTCGGTTC
129 TCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
4720 CTTAAAGTATTCAAGACGATCC
194 CTTAAAGTATTCAAGACGATCC
* * * * * * *
4742 ATTCCTTCAAGCAA-TTTTCTGAACATTCAATTCTTGAGAAATGGCAGCATTTGGTCTAAAGAGT
1 ATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
* * * *
4806 TTGTCATTTT-AAAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACTTGAGAATTG-TT-T
65 TTGTCATTTTGTAAAA-AGGTTTTGGTCTTTGAAT-TAAAACTTATTTACGTGAGAATTGTTTCT
* * **
4868 CGCTTGGTTCTTGGATAAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCATTT
128 CTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* * *
4933 CCTTACAGTAATCAAGACGATAC
193 CCTTAAAGTATTCAAGACGATCC
* * * * * *
4956 ATTCCTTTGAGCAACTTTCTT--AACATTCTAAGCTCGAAAAATCGCATCATTT-TTCTAAATTG
1 ATTCCTTCGAGCAA-TTT-TTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG
* * *
5018 TTTGTCACTTTGTAAACAA-GTTTT-GTCTTTAAATTAAAAACTTATTTACGTGAGAATTATTTC
64 TTTGTCATTTTGTAAA-AAGGTTTTGGTCTTTGAATT-AAAACTTATTTACGTGAGAATT-GTT-
* ** * * * * * *
5081 TCTCTCTTTGTTCTTGGACAAACTTCCAAACTTTTCAAACCTTTACGAGTTCTTTTATTACTCCG
125 TCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
*
5146 GTTCCTTAAAGTATTCAGGAAC-ATCC
190 GTTCCTTAAAGTATTCAAG-ACGATCC
* * * * * *
5172 ATTCCTTTC-AGCAA-TTTT-GAACATTGCATTCTCGGGTAATCGCATCATTTAGTGTAAATAGT
1 ATTCC-TTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
* * * ** ** *
5234 TTTTCGTTTTGTAAACAAGTTTTTGGTCTTCAAAGCGAAAACTTATTAACGTGAGAATTG-TT-T
65 TTGTCATTTTGTAAA-AAGGTTTTGGTCTTTGAA-TTAAAACTTATTTACGTGAGAATTGTTTCT
* * * *
5297 CTCTTGGCTGTTGGATGAAC-TTCTGAACTTTTTAAACTTTTACGAGTTCTTTTATAACTT-GGT
128 CTCTTGGTTCTTGGATGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* *
5360 TCCCTACAA-TATTCAAGATGATCC
192 TCCTTA-AAGTATTCAAGACGATCC
* * * * *
5384 ATTCCTTCAAGCTA-TTTTCTGAACATTCCATGCTCGGGAAATCGCATAATTTTGTCTAAATAGT
1 ATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
* * *
5448 TTGTCATTTTGTGAACAA-CTTTTGGTCTTTGAATTAAATACTTATTTACGCGAGAATTGTTTCT
65 TTGTCATTTTGT-AAAAAGGTTTTGGTCTTTGAATTAAA-ACTTATTTACGTGAGAATTGTTTCT
* * * * * * * *
5512 GTTTTAGTTCTTGGACGAACTTCCGAACTTGCCAAACTTTTACGAGTTCTTTTATAATTTCAGTT
128 CTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* *
5577 CCATAAAGCATTCAAGACGATCC
193 CCTTAAAGTATTCAAGACGATCC
* *
5600 ATTCCTTCGAGCAATTTTTCGAACATTCCATGGTCGAAAAATCGCATCATTTGGTCTAAATAGTT
1 ATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTT
* * *
5665 TGTCATTTTGTAAAAA-GCTTTGTTGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
66 TGTCATTTTGTAAAAAGGTTTTGGTCTTTGAATT-AAAACTTATTTACGTGAGAATTGTTTCTCT
* * *
5729 CTTGGTTCTTGGACGAACTTCCGAACTAGTCAAACTTT
130 CTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTT
Statistics
Matches: 4581, Mismatches: 766, Indels: 409
0.80 0.13 0.07
Matches are distributed among these distances:
209 8 0.00
210 63 0.01
211 250 0.05
212 165 0.04
213 339 0.07
214 745 0.16
215 589 0.13
216 1495 0.33
217 506 0.11
218 240 0.05
223 30 0.01
224 25 0.01
225 56 0.01
226 2 0.00
227 66 0.01
228 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (215 bp):
ATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTT
TGTCATTTTGTAAAAAGGTTTTGGTCTTTGAATTAAAACTTATTTACGTGAGAATTGTTTCTCTC
TTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
TAAAGTATTCAAGACGATCC
Found at i:1420 original size:430 final size:427
Alignment explanation
Indices: 1--5766 Score: 5808
Period size: 430 Copynumber: 13.4 Consensus size: 427
* * * * * * *
1 ATTCCTTCGAGCAATTTTCTGAACATTCAATTCTTGAGAAATGGCAGCATTTGGTCTAAAGAGTT
1 ATTCCTTCGAGCAA-TTTCTTAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTT
** * * *
66 TGTCATTTTAAAAACAAGTATTGGTCTTTGAATCAAAAACATATTTACGTGAGAATTGTTTT-TC
65 TGTCATTTTGTAAACAAGT-TTTGTCTTTGAATCAAAAACTTATTTACGTGAGAATTTTTTTCTC
** *
130 TTGGTTCTTGGACAAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
129 TTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
* * * * *
195 TACAA-TATTCAAGACGATACATTCCTTCTAGCAACTTTCTT-AACATTCTATGCTCGAAAAATC
194 TA-AAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTTTGAACATTCCATGCTCGAGAAATC
* * * * * * * *
258 ACATCGTTT-TTCTAAATTGTATGACATTTTGTAAAACAAGTTTT-GTCTTTAAATTACAAACTT
257 GCATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAAGTTTTGGTCTTTGAATTAAAAACTT
* * * *
321 ATTTACGTGAGAATTGTTTGTCTCTCTTTGTTCTTGGATGAACTTCTAAACTTTTCAAACTTTTA
321 ATTTACGTGAGAATTG--T-TCTCTCTTGGTTCTTGGACGAACTTC-GAACTTGTCAAACTTTTA
*
386 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTTTTCAAGACGATCC
382 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
* * * * * *
432 ATTCCTTTGAGGAATTTTTTAACATTCCATTCTCGAGAATTCGCATCATTTAGTCTAAATAGTTT
1 ATTCCTTCGAGCAATTTCTTAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTT
* * ** * * * * * * * * *
497 TTAATTTTGTAAACGATTTTTTATCATTAAAACAAGAACATATTTTC--CAG-ATGATTTTT-TC
66 GTCATTTTGTAAAC-AAGTTTTGTCTTTGAATCAAAAACTTATTTACGTGAGAAT-TTTTTTCTC
* * * *
558 TTGGCTGTTGGATGAAC-TTCTGAACTTTTCAAACTTTTACGAGTTCTTTTATAAGTT-GGTTCC
129 TTGGTTCTTGGATGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
** * * * * * *
621 TTGCAGTATTCAAGATGATCCATTCCATCAAGCAATTTTCTAAACATTCCATGCTCGGGAAATCG
193 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCATGCTCGAGAAATCG
* * * * * *
686 CATCATTTGGTCTAAATAGTTTTTTCATTGTGTAAAAAACTTTTGGTCTTTGAAATGAAAACTTA
258 CATCATTTGGTCTAAATAG-TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA
* * * *
751 TTTACGTGAGAATTGTTTCTCTTTTGGTTATTGGACGAACTTCTGAACTTATCAAATTTTTACGA
322 TTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTC-GAACTTGTCAAACTTTTACGA
* * * *
816 GTTCTTTTATAATTTCAGTTCCATAAAGCATTCAAGACGATCC
385 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
* *
859 ATTCCTTCGAGCAATTT-TTCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGT
1 ATTCCTTCGAGCAATTTCTT--AACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
* * * * * * * *
923 TTGTCATTTTGTTAAA-AGGTCTCGTTGTTTGAATTAAAAGCTTATTTATGTGAGAATTCTTTCT
64 TTGTCATTTTG-TAAACAAGTTTTG-TCTTTGAATCAAAAACTTATTTACGTGAGAATT-TTTTT
* * * * * *
987 CTCTTGGTTCGTGGATGAACTTTCGAACTAGTTAAACTTTTACGAGTTCTTTCATATCTTTGGTT
126 CTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* * *
1052 CCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCAATTCTTGAGAAAT
191 CCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCATGCTCGAGAAAT
* ** *
1117 -GACAGT-ATTTGGTCTAAAGAGTTTGTCATTTTAAAAACAAGTTTTGGTCTTTGAATCAAAAAC
256 CG-CA-TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAAC
* *
1180 TTATTTACGTGAGAATTGTT-TCGCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAACTTTTAC
319 TTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTCAAACTTTTAC
* *
1244 GAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGACGATAC
383 GAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
* * * * * *
1289 ATTCCTTCGATCAACTTTCTTAACATTCTAAGCTCGAAAAATCGCATCATTT-TTCTAAATTGTT
1 ATTCCTTCGAGCAA-TTTCTTAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTT
* *
1353 TGTCATTTTGTAAACAAGTTTTGTCTTTAAATTAAAAACTTATTTACGTGAGAATTATTTCTCTC
65 TGTCATTTTGTAAACAAGTTTTGTCTTTGAATCAAAAACTTATTTACGTGAGAATT-TTT-T-TC
* * * * * *
1418 TCTTTGTTCTTGGATGAACTTCCAAACTTTTCAAACCTTTACGAGTTCTTTTATAACTCCGGTTC
127 TCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* * * * *
1483 CTTAAATTATTCAAGAAC-ATCCATTCCTTTC-AG-AA-ATTTTGAACATTCCATTCTCGGGCAA
192 CTTAAAGTATTCAAG-ACGATCCATTCC-TTCGAGCAATTTTTTGAACATTCCATGCTCGAGAAA
* * * * ***
1544 TCGCATCATTTAGTCTAAATAGTTTTTCGTTTTGTAAACAAGTTTTTGGTCTTTAAAGCGAAAAC
255 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG-TTTTGGTCTTTGAATTAAAAAC
* * * * * * *
1609 TTATTAACGTGAAAATTGTT-TCTCTTGGCTGTTGGATGAACTTCTGAACTTTTTAAACTTTTAC
319 TTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTC-GAACTTGTCAAACTTTTAC
* *
1673 TAGTTCTTTTATAACTT-GGTTCCTTACAA-TATTCAAAGATGATCC
383 GAGTTCTTTTATAACTTCGGTTCCTTA-AAGTATTC-AAGACGATCC
* * * *
1718 ATTCCTTCGAGCTATTTTCTGAACATTCCATGCTCG-GAAAATCGCATAATTTTGTCTAAATAGT
1 ATTCCTTCGAGC-AATTTCTTAACATTCCATGCTCGAG-AAATCGCATCATTTGGTCTAAATAGT
* * * * *
1782 TTGTCATTTTGTGAACAACTTTTGGTCTTTGAA-CTAAATACTTATTTACGCGAGAATTGTTTCT
64 TTGTCATTTTGTAAACAAGTTTT-GTCTTTGAATC-AAAAACTTATTTACGTGAGAATT-TTTTT
* * * * * * *
1846 CTTTTAGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAATTTCAGTT
126 CTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* * * * * * *
1911 CCATAAAGCATTCAAGACGATGCAATCCTTCGAGCAATTTTTTGAAGATTCCATGCTCTAAAAAT
191 CCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCATGCTCGAGAAAT
* * * * *
1976 GGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAGAA-AGGTTTTGTTGTTTGAATTAAAAACT
256 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA-AACAAGTTTTGGTCTTTGAATTAAAAACT
* *
2040 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTAGTCAAACTTTTAC
320 TATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTT-CGAACTTGTCAAACTTTTAC
* *
2105 GAGTT-TTTTCATATCTTCGGTTCCTTAAAGTATTCAAGATGATCC
383 GAGTTCTTTT-ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
* * * * * * * *
2150 ATTCCTTCGAGCAATTTTCTGAACGTTCGATTCTAGAGAAATAGCAGCATTTGGTCTAAAGAGTT
1 ATTCCTTCGAGCAA-TTTCTTAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTT
* * * *
2215 TGTCATTTTGAAAACAATTTTTGGTCTTTGAATCAGAAACTTATTTACGTGAGAA-TTGTTTCTC
65 TGTCATTTTGTAAACAAGTTTT-GTCTTTGAATCAAAAACTTATTTACGTGAGAATTTTTTTCTC
*
2279 TTGGTTCTTGGACGAAC-TTCAGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
129 TTGGTTCTTGGATGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
* * * * * *
2343 TTACAGGTTCCTTACAGTATTCAAGACAATACATTCCTTCTATCAACTTTCTT-AACATTCTATG
193 TT--A--------A-AGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTTTGAACATTCCATG
* * * * *
2407 CTTGAAAAATCGCATCATTT-TTCTAAATTGTTTGTCATTTTGTAAACAAGTTTT-GTCTTTAAA
246 CTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAA
* ** * * *
2470 TTAAAAACTTATTTACATGAGAATTGTTTCTCTCTCTTTTTTCTTGGATGAACTTCTAAACTTTT
311 TTAAAAACTTATTTACGTGAGAATTG--T-TCTCTCTTGGTTCTTGGACGAACTTC-GAACTTGT
*
2535 CAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAATTATTCAAGACGATCC
372 CAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
* * * *
2591 ATTCCTTTGAGGAATTT-TTAAACATTTCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTT
1 ATTCCTTCGAGCAATTTCTT-AACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTT
* * * * *
2655 TGTCATTTTGTTAAA-AGGTTTCGTTGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
65 TGTCATTTTG-TAAACAAGTTTTG-TCTTTGAATCAAAAACTTATTTACGTGAGAATT-TTTTTC
* * * *
2719 TCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAACTTTTACGAGTT-TTTTCATATCTTCGGTT
127 TCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT-ATAACTTCGGTT
** * ** * *
2783 CCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACGTTTGATTCTTGAGAAAT
191 CCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCATGCTCGAGAAAT
* * * * *
2848 AGCAGCATTTGGTCTAAAGAGTTTGTCATTTTG-ATAACAAGTTTTGGTCTTTGAATCAGAAACT
256 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA-AACAAGTTTTGGTCTTTGAATTAAAAACT
* *
2912 TATTTACGTGAGAATTGTT-TCGCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTATG
320 TATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTT-CGAACTTGTCAAACTTTTACG
* *
2976 AGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGACGATAC
384 AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
* * * * * *
3020 ATTCCTTCTAGCAACTTTCTTAACATTCTATGCTTGAAAAATCGCATCAATTT--TCAAAATTGT
1 ATTCCTTCGAGCAA-TTTCTTAACATTCCATGCTCGAGAAATCGCATC-ATTTGGTCTAAATAGT
* * ** *
3083 TTGTTATTTTGTAAACAAGTTTTTGTCTTTAAATTTAAAACTTATTTACATGAGAATTGTTTCTC
64 TTGTCATTTTGTAAACAAG-TTTTGTCTTTGAATCAAAAACTTATTTACGTGAGAATT-TTT-T-
* * *
3148 TCTCTTCGTTCTTGGATGAAC-TTCTAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGG
125 TCTCTTGGTTCTTGGATGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGG
* * * *
3212 TTCCTTAAAGTATTCAAGATGATCCATTCCTTTGAGGAATTTTTCGAACATTCCATGCTCGAGAA
189 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCATGCTCGAGAA
* * * * * * *
3277 ATCACATCATGTGGTCTAAATAGTTTGTCATTTTGTTAAA-AGGTTTCGTTGTTTGAATTAAAAG
254 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG-TAAACAAGTTTTGGTCTTTGAATTAAAAA
* * * * *
3341 CTTATTTACGTGAGAATTGTTTCTCTCTTGATTTTTGGATGAGCGTTCGAACTAGTCAAACTTTT
318 CTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTCAAACTTTT
* * *
3406 ACGAGTTCTATCATATCTTCGGTTCCTTAAAGTATTCAAGACGATCC
381 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
* ** * * * * * * * *
3453 ATTTCTAAGAGTAATTTTCTAAACATTCAATTCTTGAGAAATGGCAGCATTTGGTCTAAAGAGTT
1 ATTCCTTCGAGCAA-TTTCTTAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTT
** * * * * *
3518 TGTCATTTTAAAAACAAGTTTTGGTCTTTGAATCAGAAACTTAATTACGTCAGAA-TTGTTTCGC
65 TGTCATTTTGTAAACAAGTTTT-GTCTTTGAATCAAAAACTTATTTACGTGAGAATTTTTTTCTC
** **
3582 TTGGTTCTTGGACAAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAAGTTCC-
129 TTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
* * * * * * *
3646 TAGCAGTATTCAAGACGATACATTCCTTCCAGCAACTTTCTT-AACTTTCTATGCTCGAAAAATC
194 TA-AAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTTTGAACATTCCATGCTCGAGAAATC
* * * *
3710 GCATCATTT-TTCAAAATTGTTTG-CATTTTGTAAACAAGTTTT-GTCTTTAAATTAAAAACTTA
257 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA
* * * * *
3772 TTTACATGAGAATTGTTTCTCTCTCTTTGTTCTTGGATGAACTTCTAAACTTTTCAAACTTTTAC
322 TTTACGTGAGAATTG--T-TCTCTCTTGGTTCTTGGACGAACTTC-GAACTTGTCAAACTTTTAC
* * *
3837 GAGTTCATTTATAACTTCGGCTCCTAAAAGTATTCAAGACGATCC
383 GAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
* * * * * * *
3882 ATTCCTTTGAGGAATTTTTTAACATTCCATTCTCGAGAATTCGCTTCATTTAGTCTAAATAGTTT
1 ATTCCTTCGAGCAATTTCTTAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTT
* * * * * * * * * * *
3947 TTAATTTTGTAAACGAGTTTTGATCATTAAAACAAGAACATATTTTCCTGAGGA--TTTTT-TCT
66 GTCATTTTGTAAACAAGTTTTG-TCTTTGAATCAAAAACTTATTTACGTGAGAATTTTTTTCTCT
* * * * * *
4009 TGGCTGTTGGATGAAC-TTCTGAACTTTTTAAACTTTTACCAGTTCTTTTATAACTT-GGTTCCC
130 TGGTTCTTGGATGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
* * * * *
4072 TACAA-TATTCAAGATGACCCAATCCTTCGAGCTATTTTCTGAACATTCCATGCTCGAGAAATCG
194 TA-AAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCATGCTCGAGAAATCG
* * * * ** *
4136 CATAATTTTGTCTAAATAGTTCGTCATTTTGTGAACAACATTTGGTCTTTGAATTAAATACTTAT
258 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAT
* * *
4201 TTACGCGAGAATTGTTTCTCTTTTAGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAG
323 TTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTC-GAACTTGTCAAACTTTTACGAG
* * * *
4266 TTCTTTTATAATTTCAGTTCCATAAAGCATTCAAGACGATCC
386 TTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
* * *
4308 TTTCCTTCAAGCAATTT-TTCGAACATTCCATGCTCGAAAAATCGCATCATTTGGTCTAAATAGT
1 ATTCCTTCGAGCAATTTCTT--AACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
* *
4372 TTGTCATTTTGTAAA-AAGGTTTTGTTTTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
64 TTGTCATTTTGTAAACAA-GTTTTG-TCTTTGAATCAAAAACTTATTTACGTGAGAATT-TTT-T
* * * *
4436 CTCTCTTTGTTCTTGGATGAAC-TTCTAAACTTTTCAAACATTTACGAGTTCTTTTATAACTTCG
125 -TCTCTTGGTTCTTGGATGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* * *
4500 GTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGGAATTTTTCGAACATTCCATGCTCGAGA
188 GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCATGCTCGAGA
* * * * * *
4565 AATCACATCATTTGGTC-AGAATAGTTTGTCATTTTGTTAAA-AGGTTTCGTTGTTTAAATTAAA
253 AATCGCATCATTTGGTCTA-AATAGTTTGTCATTTTG-TAAACAAGTTTTGGTCTTTGAATTAAA
* * * *
4628 AGCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTAGTCAAGCTT
316 AACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTCAAACTT
* *
4693 TTACGAGTTCTTTCATATCTTCGGTTCCTTAAAGTATTCAAGACGATCC
379 TTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
* * * * * * * *
4742 ATTCCTTCAAGCAATTTTCTGAACATTCAATTCTTGAGAAATGGCAGCATTTGGTCTAAAGAGTT
1 ATTCCTTCGAGCAA-TTTCTTAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTT
** * * *
4807 TGTCATTTTAAAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACTTGAGAA-TTGTTTCGC
65 TGTCATTTTGTAAACAAGTTTT-GTCTTTGAATCAAAAACTTATTTACGTGAGAATTTTTTTCTC
* **
4871 TTGGTTCTTGGATAAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCATTTCCT
129 TTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
* * * * * * * *
4936 TACAGTAATCAAGACGATACATTCCTTTGAGCAACTTTCTT-AACATTCTAAGCTCGAAAAATCG
194 TAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTTTGAACATTCCATGCTCGAGAAATCG
* * * *
5000 CATCATTT-TTCTAAATTGTTTGTCACTTTGTAAACAAGTTTT-GTCTTTAAATTAAAAACTTAT
258 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAT
* * * * * *
5063 TTACGTGAGAATTATTTCTCTCTCTTTGTTCTTGGACAAACTTCCAAACTTTTCAAACCTTTACG
323 TTACGTGAGAA-T-TGT-TCTCTCTTGGTTCTTGGACGAACTT-CGAACTTGTCAAACTTTTACG
* * *
5128 AGTTCTTTTATTACTCCGGTTCCTTAAAGTATTCAGGAAC-ATCC
384 AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAG-ACGATCC
* * * * * * *
5172 ATTCCTTTC-AGCAATTT-TGAACATTGCATTCTCGGGTAATCGCATCATTTAGTGTAAATAGTT
1 ATTCC-TTCGAGCAATTTCTTAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTT
* * ** * * * *
5235 TTTCGTTTTGTAAACAAGTTTTTGGTCTTCAAAGCGAAAACTTATTAACGTGAGAA-TTGTTTCT
65 TGTCATTTTGTAAACAAG-TTTT-GTCTTTGAATCAAAAACTTATTTACGTGAGAATTTTTTTCT
* * * *
5299 CTTGGCTGTTGGATGAAC-TTCTGAACTTTTTAAACTTTTACGAGTTCTTTTATAACTT-GGTTC
128 CTTGGTTCTTGGATGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* * * * * *
5362 CCTACAA-TATTCAAGATGATCCATTCCTTCAAGCTATTTTCTGAACATTCCATGCTCGGGAAAT
192 CTTA-AAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCATGCTCGAGAAAT
* * * * *
5426 CGCATAATTTTGTCTAAATAGTTTGTCATTTTGTGAACAACTTTTGGTCTTTGAATTAAATACTT
256 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
* * * * *
5491 ATTTACGCGAGAATTGTTTCTGTTTTAGTTCTTGGACGAACTTCCGAACTTGCCAAACTTTTACG
321 ATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTT-CGAACTTGTCAAACTTTTACG
* * * *
5556 AGTTCTTTTATAATTTCAGTTCCATAAAGCATTCAAGACGATCC
384 AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
* *
5600 ATTCCTTCGAGCAATTT-TTCGAACATTCCATGGTCGAAAAATCGCATCATTTGGTCTAAATAGT
1 ATTCCTTCGAGCAATTTCTT--AACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
* * * *
5664 TTGTCATTTTGTAAA-AAGCTTTGTTGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
64 TTGTCATTTTGTAAACAAGTTTTG-TCTTTGAATCAAAAACTTATTTACGTGAGAATT-TTTTTC
* * *
5728 TCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAACTTT
127 TCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTT
Statistics
Matches: 4395, Mismatches: 781, Indels: 319
0.80 0.14 0.06
Matches are distributed among these distances:
424 4 0.00
425 60 0.01
426 160 0.04
427 306 0.07
428 631 0.14
429 682 0.16
430 850 0.19
431 379 0.09
432 307 0.07
433 297 0.07
434 340 0.08
435 12 0.00
436 1 0.00
439 35 0.01
440 113 0.03
441 146 0.03
442 70 0.02
443 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (427 bp):
ATTCCTTCGAGCAATTTCTTAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTT
GTCATTTTGTAAACAAGTTTTGTCTTTGAATCAAAAACTTATTTACGTGAGAATTTTTTTCTCTT
GGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
AAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCATGCTCGAGAAATCGCAT
CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTA
CGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCGAACTTGTCAAACTTTTACGAGTTCTT
TTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
Found at i:2141 original size:645 final size:647
Alignment explanation
Indices: 1--5749 Score: 6351
Period size: 645 Copynumber: 8.9 Consensus size: 647
* * * * * * *
1 ATTCCTTCGAGCAATTTTCTGAACATTCAATTCTTGAGAAATGGCAGCATTTGGTCTAAAGAGTT
1 ATTCCTTCGAGCAATTTTTTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTT
** * * * * *
66 TGTCATTTTAAAAACAAGTATTGGTCTTTGAATCAAAAACATATTTACGTGAGAATTGTTT-T-T
66 TGTCATTTTGTAAA-AGGTTTTGTTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
** * *
129 CTTGGTTCTTGGACAAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
130 CTTGGTTCTTGGATGAACTTCCGAACTAGTCAAACTTTTACGAGTTCTTTTATATCTTCGGTTCC
* * * * * * *
194 TTACAA-TATTCAAGACGATACATTCCTTCTAGCAACTTTCTTAACATTCTATGCTCGAAAAATC
195 TTA-AAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATTCTCGAGAAATC
* * * * * * * *
258 ACATCGTTT-TTCTAAATTGTATGACATTTTGTAAAACAAGTTTT-GTCTTTAAATTACAAACTT
259 GCATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAAGTTTTGGTCTTTGAACTA-AAACTT
* * * *
321 ATTTACGTGAGAATTGTTTGTCTCTCTTTGTTCTTGGATGAACTTCTAAACTTTTCAAACTTTTA
322 ATTTACGTGAGAATTG--T-T-TCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTA
* * *
386 CGAGTTCTTTTATAACTTCGGTTCCTTA-AAGTTTTCAAGACGATCCATTCCTTTGAGGAATTTT
383 CGAGTTCTTTTATAACTTCGGTTCCTTACAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * * * * * *
450 -TTAACATTCCATTCTCGAGAATTCGCATCATTTAGTCTAAATAGTTTTTAATTTTGTAAACGAT
448 CTTAACATTCCATGCTCGAAAAATCGCATCATTTTGTCTAAATAGTTTGTCATTTTGTAAACAAG
** * ** * * * * * * *
514 TTTTTATCATTAAAACAAGAACATATTTTC--CAG-A-TGATTT-T-T-TCTTGGCTGTTGGATG
513 TTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTG-TTTCTCTCTCTTTGTTCTTGGATG
* * **
572 AACTTCTGAACTTTTCAAACTTTTACGAGTTCTTTTATAAGTT-GGTTCCTTGCAGTATTCAAGA
577 AACTTCTAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
*
636 TGATCC
642 CGATCC
* * * * *
642 ATTCCATCAAGCAATTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
1 ATTCCTTCGAGCAATTTTTTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG-T
* * ** * * *
707 TTTTCATTGTGTAAAAAACTTTTGGTCTTTGAAATGAAAACTTATTTACGTGAGAATTGTTTCTC
65 TTGTCATTTTGT-AAAAGGTTTTGTTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
* * * * * *
772 TTTTGGTTATTGGACGAACTTCTGAACTTA-TCAAATTTTTACGAGTTCTTTTATAAT-TTCAGT
129 TCTTGGTTCTTGGATGAACTTCCGAAC-TAGTCAAACTTTTACGAGTTCTTTTAT-ATCTTCGGT
* * * * *
835 TCCATAAAGCATTCAAGACGATCCATTCCTTCGAGCAATTTT-TCGAACATTCCATGCTTGGGAA
192 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT-GAACATTCCATTCTCGAGAA
* * * * * *
899 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTTAAA-AGGTCTCGTTGTTTGAATTAAAAG
256 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG-TAAACAAGTTTTGGTCTTTGAACTAAAA-
* * * * * *
963 CTTATTTATGTGAGAATTCTTTCTCTCTTGGTTCGTGGATGAACTT-TCGAACTAGTTAAACTTT
319 CTTATTTACGTGAGAATT-GTT-TCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTT
* * *
1027 TACGAGTTCTTTCATATCTTTGGTTCCTTA-AAGTATTCAAGACGATCCATTCCTTCGAGCAATT
381 TACGAGTTCTTTTATAACTTCGGTTCCTTACAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
* * * * * * **
1091 TT-TTGAACATTCAATTCTTGAGAAAT-GACAGT-ATTTGGTCTAAAGAGTTTGTCATTTTAAAA
446 TTCTT-AACATTCCATGCTCGAAAAATCG-CA-TCATTTTGTCTAAATAGTTTGTCATTTTGTAA
* * * *
1153 ACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTG--T-T-TCGCTTGGTTCTTG
508 ACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTCTTTGTTCTTG
** * * *
1214 GACAAACTT-TCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATT
573 GATGAACTTCT-AAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT
*
1278 CAAGACGATAC
637 CAAGACGATCC
* * * * * * *
1289 ATTCCTTCGATCAACTTTCTT-AACATTCTAAGCTCGAAAAATCGCATCATTT-TTCTAAATTGT
1 ATTCCTTCGAGCAA-TTTTTTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
* * *
1352 TTGTCATTTTGTAAACAAGTTTTG-TCTTTAAATTAAAAACTTATTTACGTGAGAATTATTTCTC
65 TTGTCATTTTGTAAA-AGGTTTTGTTCTTTGAATTAAAAACTTATTTACGTGAGAATT-GTT-TC
* * ** * * *
1416 TCTCTTTGTTCTTGGATGAACTTCCAAACTTTTCAAACCTTTACGAGTTCTTTTATAACTCCGGT
127 TCTCTTGGTTCTTGGATGAACTTCCGAACTAGTCAAACTTTTACGAGTTCTTTTATATCTTCGGT
* * * *
1481 TCCTTAAATTATTCAAGAAC-ATCCATTCCTTTC-AG-AAATTT-TGAACATTCCATTCTCGGGC
192 TCCTTAAAGTATTCAAG-ACGATCCATTCC-TTCGAGCAATTTTCTGAACATTCCATTCTCGAGA
* * * * *
1542 AATCGCATCATTTAGTCTAAATAGTTTTTCGTTTTGTAAACAAGTTTTTGGTCTTTAAAGCGAAA
255 AATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG-TTTTGGTCTTTGAA-CTAAA
* * * * * * *
1607 ACTTATTAACGTGAAAATTGTTTCTCTTGGCTGTTGGATGAACTTCTGAACTTTTTAAACTTTTA
318 ACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTA
* * *
1672 CTAGTTCTTTTATAACTT-GGTTCCTTACAA-TATTCAAAGATGATCCATTCCTTCGAGCTATTT
383 CGAGTTCTTTTATAACTTCGGTTCCTTACAAGTATTC-AAGACGATCCATTCCTTCGAGCAATTT
* * * *
1735 TCTGAACATTCCATGCTCGGAAAATCGCATAATTTTGTCTAAATAGTTTGTCATTTTGTGAACAA
447 TCTTAACATTCCATGCTCGAAAAATCGCATCATTTTGTCTAAATAGTTTGTCATTTTGTAAACAA
* * * * * * *
1800 CTTTTGGTCTTTGAACTAAATACTTATTTACGCGAGAATTGTTTCTCT-T-TTAGTTCTTGGACG
512 GTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTCTTTGTTCTTGGATG
* * * * * *
1863 AACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAATTTCAGTTCCATAAAGCATTCAAGA
577 AACTTCTAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
*
1928 CGATGC
642 CGATCC
* * * * * *
1934 AATCCTTCGAGCAATTTTTTGAAGATTCCATGCTCTAAAAATGGCATAATTTGGTCTAAATAGTT
1 ATTCCTTCGAGCAATTTTTTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTT
*
1999 TGTCATTTTGTAGAAAGGTTTTGTTGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
66 TGTCATTTTGTA-AAAGGTTTTGTTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
2064 CTTGGTTCTTGGATGAACTTCCGAACTAGTCAAACTTTTACGAGTT-TTTTCATATCTTCGGTTC
130 CTTGGTTCTTGGATGAACTTCCGAACTAGTCAAACTTTTACGAGTTCTTTT-ATATCTTCGGTTC
* * * * *
2128 CTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTGAACGTTCGATTCTAGAGAAATA
194 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATTCTCGAGAAATC
* * * *
2193 GCAGCATTTGGTCTAAAGAGTTTGTCATTTTGAAAACAATTTTTGGTCTTTGAA-TCAGAAACTT
259 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAACT-A-AAACTT
*
2257 ATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCAGAACTTGTCAAACTTTTACGAG
322 ATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAG
* * * *
2322 TTCTTTTATAACTTCGGTTCCTTACAGGTTCCTTACAGTATTCAAGACAATACATTCCTTCTATC
387 TTCTTTTATAACTTCGGTTCCTT--A-----C--A-AGTATTCAAGACGATCCATTCCTTCGAGC
* * * *
2387 AACTTTCTTAACATTCTATGCTTGAAAAATCGCATCATTTT-TCTAAATTGTTTGTCATTTTGTA
442 AATTTTCTTAACATTCCATGCTCGAAAAATCGCATCATTTTGTCTAAATAGTTTGTCATTTTGTA
* *
2451 AACAAGTTTT-GTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTCTTTTTTCTT
507 AACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTCTTTGTTCTT
*
2515 GGATGAACTTCTAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAATTATT
572 GGATGAACTTCTAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT
2580 CAAGACGATCC
637 CAAGACGATCC
* * * * *
2591 ATTCCTTTGAGGAA-TTTTTAAACATTTCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTT
1 ATTCCTTCGAGCAATTTTTTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTT
* *
2655 TGTCATTTTGTTAAAAGGTTTCGTTGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
66 TGTCATTTTG-TAAAAGGTTTTGTTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
*
2720 CTTGGTTCTTGGACGAACTTCCGAACTAGTCAAACTTTTACGAGTT-TTTTCATATCTTCGGTTC
130 CTTGGTTCTTGGATGAACTTCCGAACTAGTCAAACTTTTACGAGTTCTTTT-ATATCTTCGGTTC
* * ** * *
2784 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACGTTTGATTCTTGAGAAATA
194 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATTCTCGAGAAATC
* *
2849 GCAGCATTTGGTCTAAAGAGTTTGTCATTTTG-ATAACAAGTTTTGGTCTTTGAA-TCAGAAACT
259 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTA-AACAAGTTTTGGTCTTTGAACT-A-AAACT
* * *
2912 TATTTACGTGAGAATTGTTTCGCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTATGA
321 TATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGA
* * *
2977 GTTCTTTTATAACTTCGGTTCCTTAC-AGTATTCAAGACGATACATTCCTTCTAGCAACTTTCTT
386 GTTCTTTTATAACTTCGGTTCCTTACAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTT
* * * * * *
3041 AACATTCTATGCTTGAAAAATCGCATCAATTT-TCAAAATTGTTTGTTATTTTGTAAACAAGTTT
451 AACATTCCATGCTCGAAAAATCGCATCATTTTGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * * *
3105 TTGTCTTTAAATTTAAAACTTATTTACATGAGAATTGTTTCTCTCTCTTCGTTCTTGGATGAACT
516 TGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTCTTTGTTCTTGGATGAACT
*
3170 TCTAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGAT
581 TCTAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAT
3235 CC
646 CC
* * * * *
3237 ATTCCTTTGAGGAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATGTGGTCTAAATAGTT
1 ATTCCTTCGAGCAATTTTTTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTT
* * *
3302 TGTCATTTTGTTAAAAGGTTTCGTTGTTTGAATTAAAAGCTTATTTACGTGAGAATTGTTTCTCT
66 TGTCATTTTG-TAAAAGGTTTTGTTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* * * * *
3367 CTTGATTTTTGGATGAGCGTT-CGAACTAGTCAAACTTTTACGAGTTCTATCATATCTTCGGTTC
130 CTTGGTTCTTGGATGAAC-TTCCGAACTAGTCAAACTTTTACGAGTTCTTTTATATCTTCGGTTC
* ** * * * * *
3431 CTTAAAGTATTCAAGACGATCCATTTCTAAGAGTAATTTTCTAAACATTCAATTCTTGAGAAATG
194 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATTCTCGAGAAATC
* * **
3496 GCAGCATTTGGTCTAAAGAGTTTGTCATTTTAAAAACAAGTTTTGGTCTTTGAA-TCAGAAACTT
259 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAACT-A-AAACTT
* * * *
3560 AATTACGTCAGAATTGTTTCGCTTGGTTCTTGGACAAACTT-TCGAACTTGTCAAACTTTTACGA
322 ATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGA
** * * *
3624 GTTCTTTTATAACTTAAGTTCC-TAGC-AGTATTCAAGACGATACATTCCTTCCAGCAACTTTCT
386 GTTCTTTTATAACTTCGGTTCCTTA-CAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT
* * * *
3687 TAACTTTCTATGCTCGAAAAATCGCATCATTTT-TCAAAATTGTTTG-CATTTTGTAAACAAGTT
450 TAACATTCCATGCTCGAAAAATCGCATCATTTTGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
*
3750 TT-GTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTCTTTGTTCTTGGATGAAC
515 TTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTCTTTGTTCTTGGATGAAC
* * *
3814 TTCTAAACTTTTCAAACTTTTACGAGTTCATTTATAACTTCGGCTCCTAAAAGTATTCAAGACGA
580 TTCTAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA
3879 TCC
645 TCC
* * * * * *
3882 ATTCCTTTGAGGAATTTTTT-AACATTCCATTCTCGAGAATTCGCTTCATTTAGTCTAAATAGTT
1 ATTCCTTCGAGCAATTTTTTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTT
* * * * * * ** * * * * *
3946 TTTAATTTTGTAAACGAGTTTTGATCATTAAAACAAGAACATATTTTCCTGAGGA-T-TTT-T-T
66 TGTCATTTTGTAAAAG-GTTTTGTTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* * * ** * * *
4007 CTTGGCTGTTGGATGAACTTCTGAACTTTTTAAACTTTTACCAGTTCTTTTATAACTT-GGTTCC
130 CTTGGTTCTTGGATGAACTTCCGAACTAGTCAAACTTTTACGAGTTCTTTTATATCTTCGGTTCC
* * * * * *
4071 CTACAA-TATTCAAGATGACCCAATCCTTCGAGCTATTTTCTGAACATTCCATGCTCGAGAAATC
195 TTA-AAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATTCTCGAGAAATC
* * * * ** *
4135 GCATAATTTTGTCTAAATAGTTCGTCATTTTGTGAACAACATTTGGTCTTTGAATTAAATACTTA
259 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAACTAAA-ACTTA
* *
4200 TTTACGCGAGAATTGTTTCTCTTTTAGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGA
323 TTTACGTGAGAATTGTTTCTC--TTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGA
* * * * * *
4265 GTTCTTTTATAATTTCAGTTCCATA-AAGCATTCAAGACGATCCTTTCCTTCAAGCAATTTT-TC
386 GTTCTTTTATAACTTCGGTTCCTTACAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT-
* *
4328 GAACATTCCATGCTCGAAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AAGGT
450 TAACATTCCATGCTCGAAAAATCGCATCATTTTGTCTAAATAGTTTGTCATTTTGTAAACAA-GT
* * *
4392 TTTGTTTTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTCTTTGTTCTTGGATGAA
514 TTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTCTTTGTTCTTGGATGAA
*
4457 CTTCTAAACTTTTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
579 CTTCTAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
4522 ATCC
644 ATCC
* * * *
4526 ATTCCTTTGAGGAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTC-AGAATAGT
1 ATTCCTTCGAGCAATTTTTTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTA-AATAGT
* * * * *
4590 TTGTCATTTTGTTAAAAGGTTTCGTTGTTTAAATTAAAAGCTTATTTACGTGAGAATTATTTCTC
65 TTGTCATTTTG-TAAAAGGTTTTGTTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
* * * *
4655 TCTTGGTTCTTGGACGAACTTTCGAACTAGTCAAGCTTTTACGAGTTCTTTCATATCTTCGGTTC
129 TCTTGGTTCTTGGATGAACTTCCGAACTAGTCAAACTTTTACGAGTTCTTTTATATCTTCGGTTC
* * * *
4720 CTTAAAGTATTCAAGACGATCCATTCCTTCAAGCAATTTTCTGAACATTCAATTCTTGAGAAATG
194 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATTCTCGAGAAATC
* * ** *
4785 GCAGCATTTGGTCTAAAGAGTTTGTCATTTTAAAAACAAGTTTTGGTCTTTGAATCAAAAACTTA
259 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAA-CTAAAACTTA
* * **
4850 TTTACTTGAGAATTGTTTCGCTTGGTTCTTGGATAAACTT-TCGAACTTGTCAAACTTTTACGAG
323 TTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAG
** * * * *
4914 TTCTTTTATAACTTCATTTCCTTAC-AGTAATCAAGACGATACATTCCTTTGAGCAACTTTCTTA
387 TTCTTTTATAACTTCGGTTCCTTACAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTTA
* * * *
4978 ACATTCTAAGCTCGAAAAATCGCATCATTTT-TCTAAATTGTTTGTCACTTTGTAAACAAGTTTT
452 ACATTCCATGCTCGAAAAATCGCATCATTTTGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
* **
5042 -GTCTTTAAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTCTTTGTTCTTGGACAAACTT
517 GGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTCTTTGTTCTTGGATGAACTT
* * * * *
5106 CCAAACTTTTCAAACCTTTACGAGTTCTTTTATTACTCCGGTTCCTTAAAGTATTCAGGAAC-AT
582 CTAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAG-ACGAT
5170 CC
646 CC
* * * * * *
5172 ATTCCTTTC-AGCAA--TTTTGAACATTGCATTCTCGGGTAATCGCATCATTTAGTGTAAATAGT
1 ATTCC-TTCGAGCAATTTTTTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
* * * * ** *** *
5234 TTTTCGTTTTGTAAACAAGTTTTTGGTCTTCAAAGCGAAAACTTATTAACGTGAGAATTG-TT-T
65 TTGTCATTTTGT-AA-AAGGTTTTGTTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* * * ** * *
5297 CTCTTGGCTGTTGGATGAACTTCTGAACTTTTTAAACTTTTACGAGTTCTTTTATAACTT-GGTT
128 CTCTTGGTTCTTGGATGAACTTCCGAACTAGTCAAACTTTTACGAGTTCTTTTATATCTTCGGTT
* * * * * *
5361 CCCTACAA-TATTCAAGATGATCCATTCCTTCAAGCTATTTTCTGAACATTCCATGCTCGGGAAA
193 CCTTA-AAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATTCTCGAGAAA
* * * * *
5425 TCGCATAATTTTGTCTAAATAGTTTGTCATTTTGTGAACAACTTTTGGTCTTTGAATTAAATACT
257 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAACTAAA-ACT
* * * * *
5490 TATTTACGCGAGAATTGTTTCTGTTTTAGTTCTTGGACGAACTTCCGAACTTGCCAAACTTTTAC
321 TATTTACGTGAGAATTGTTTC--TCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTAC
* * * *
5555 GAGTTCTTTTATAATTTCAGTTCCATA-AAGCATTCAAGACGATCCATTCCTTCGAGCAATTTT-
384 GAGTTCTTTTATAACTTCGGTTCCTTACAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC
* * *
5618 TCGAACATTCCATGGTCGAAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AAG
449 T-TAACATTCCATGCTCGAAAAATCGCATCATTTTGTCTAAATAGTTTGTCATTTTGTAAACAAG
* * * * * *
5682 CTTTGTTGTTTGAATTAAAAACTTATTTACGTGAGAATTG-TT-TCTCTCTTGGTTCTTGGACGA
513 TTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTCTTTGTTCTTGGATGA
5745 ACTTC
578 ACTTC
5750 CGAACTAGTC
Statistics
Matches: 4394, Mismatches: 591, Indels: 244
0.84 0.11 0.05
Matches are distributed among these distances:
638 2 0.00
639 122 0.03
640 48 0.01
641 174 0.04
642 211 0.05
643 371 0.08
644 677 0.15
645 701 0.16
646 557 0.13
647 633 0.14
648 130 0.03
649 52 0.01
650 124 0.03
651 3 0.00
654 2 0.00
655 38 0.01
656 405 0.09
657 139 0.03
658 5 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (647 bp):
ATTCCTTCGAGCAATTTTTTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTT
TGTCATTTTGTAAAAGGTTTTGTTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
TTGGTTCTTGGATGAACTTCCGAACTAGTCAAACTTTTACGAGTTCTTTTATATCTTCGGTTCCT
TAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATTCTCGAGAAATCGC
ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAACTAAAACTTATTT
ACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCT
TTTATAACTTCGGTTCCTTACAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTTAACAT
TCCATGCTCGAAAAATCGCATCATTTTGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC
TTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTCTTTGTTCTTGGATGAACTTCTAA
ACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
Done.