Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001104.1 Kokia drynarioides strain JFW-HI SEQ_112382, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10403
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32


Found at i:1944 original size:19 final size:19

Alignment explanation


    Indices: 1920--1972  Score: 54
    Period size: 20  Copynumber: 2.7  Consensus size: 19

       1910 CAAGCATACG

                               
       1920 ACAAAACAAAAATTCAAAA
          1 ACAAAACAAAAATTCAAAA

                            *    
       1939 ACAAAAGCAAACAA-TGAAAA
          1 ACAAAA-CAAA-AATTCAAAA

            *    *        
       1959 GCAAAGCAAAAATT
          1 ACAAAACAAAAATT

       1973 TCTATGTTAC


Statistics
Matches: 28,  Mismatches: 3, Indels: 6
        0.76            0.08        0.16

Matches are distributed among these distances:
  18    2  0.07
  19   11  0.39
  20   13  0.46
  21    2  0.07

ACGTcount: A:0.68, C:0.15, G:0.08, T:0.09


Consensus pattern (19 bp):   
ACAAAACAAAAATTCAAAA
Done.