Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011045.1 Kokia drynarioides strain JFW-HI SEQ_126016, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7557
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Found at i:406 original size:216 final size:213
Alignment explanation
Indices: 1--447 Score: 567
Period size: 216 Copynumber: 2.1 Consensus size: 213
* * *
1 TTGTAAACAAGTTTTGATCTTTCAATTAAAAACTTATTTACGTGAGAATTCTGTCTCTTGGTTCT
1 TTGTAAACAAGTTTTGACCTTTCAATTAAAAACTTATTTACATGAGAATTCTCTCTCTTGGTTCT
* * *
66 TGGACGAACTTTCGAACTTGTCAAAGTTTTATGAGTTCTTTTAAAGCTTCGGTTCCTTAAAGTAT
66 TGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAAA-CTTCGGTTCCTTAAAGTAT
* *** * *
131 TCAAGCCGATCCAATCCTTCGAGCAATTTTTTGAACATTACATGCTCAAGAAGTCGCATCATTTG
130 TCAAGACGATCCAATCCTTCGAGCAATTTTCAAAACATTACATGCACAAGAAATCGCATCATTTG
196 GTCTAAATAGTTTGTCATT
195 GTCTAAATAGTTTGTCATT
* * * * *
215 TTGTAAACAAGTTTTGGCCTTTGAATTGAAAACTTATTTATATGAGAATTGTTTCTCTCTTGGTT
1 TTGTAAACAAGTTTTGACCTTTCAATTAAAAACTTATTTACATGAGAA-T-TCTCTCTCTTGGTT
*
280 GTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTCTTAAA-TTCGGTTCCTTAAAG
64 CTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTC-TT-TTAAACTTCGGTTCCTTAAAG
* * * * * * *
344 TGTTCTAGACGATCCATTCTTTCGAGTAATTTTCAAAACATTCCATG-AGAGAGAAATCGCATCA
127 TATTCAAGACGATCCAATCCTTCGAGCAATTTTCAAAACATTACATGCACA-AGAAATCGCATCA
*
408 TTTGGTCTAAATAGTTTTTCATT
191 TTTGGTCTAAATAGTTTGTCATT
*
431 TTATAAACATA-TTTTGA
1 TTGTAAACA-AGTTTTGA
448 TCTTGGTTCT
Statistics
Matches: 199, Mismatches: 28, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
214 42 0.21
215 2 0.01
216 147 0.74
217 3 0.02
218 5 0.03
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40
Consensus pattern (213 bp):
TTGTAAACAAGTTTTGACCTTTCAATTAAAAACTTATTTACATGAGAATTCTCTCTCTTGGTTCT
TGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAAACTTCGGTTCCTTAAAGTATT
CAAGACGATCCAATCCTTCGAGCAATTTTCAAAACATTACATGCACAAGAAATCGCATCATTTGG
TCTAAATAGTTTGTCATT
Found at i:586 original size:176 final size:176
Alignment explanation
Indices: 272--607 Score: 446
Period size: 176 Copynumber: 1.9 Consensus size: 176
262 ATTGTTTCTC
*
272 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTCTTAAATTCGGTTC
1 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTCTTAAATTCGGTTC
* * * * * * * * *
337 CTTAAAGTGTTCTAGACGATCCATTCTTTCGAGTAATTTTCAAAACATTCCATGAGAGAGAAATC
66 CTTAAAGTATTCAAGACGATCCAATCCTTCAAGAAATTTTCAAAACAATACATGACAGAGAAATC
* *
402 GCATCATTTGGTCTAAATAGTTTTTCATTTTATAAACATATTTTGA
131 GCATCATTTGGTCTAAAAAGTTTGTCATTTTATAAACATATTTTGA
*
448 TCTTGGTTCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTC-TT-TTACAACTTCGGT
1 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTCTTA-AA-TTCGGT
* * *
511 TCCTTAAAGTATTCAAGACGATCCAATCCTTCAAGCAAATTTTC-GAGCAATACATGCTCAG-GA
64 TCCTTAAAGTATTCAAGACGATCCAATCCTTCAAG-AAATTTTCAAAACAATACATG-ACAGAGA
* *
574 AGTCGTATCATTTGGTCTAAAAAGTTTGTCATTT
127 AATCGCATCATTTGGTCTAAAAAGTTTGTCATTT
608 GAAAACTAGT
Statistics
Matches: 138, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
174 3 0.02
175 4 0.03
176 122 0.88
177 9 0.07
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (176 bp):
TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTCTTAAATTCGGTTC
CTTAAAGTATTCAAGACGATCCAATCCTTCAAGAAATTTTCAAAACAATACATGACAGAGAAATC
GCATCATTTGGTCTAAAAAGTTTGTCATTTTATAAACATATTTTGA
Found at i:885 original size:216 final size:215
Alignment explanation
Indices: 448--1274 Score: 903
Period size: 216 Copynumber: 3.8 Consensus size: 215
438 CATATTTTGA
* * * *
448 TCTTGGTTCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTACAACT-TCGGTT
1 TCTTGGTTCTTAGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATCT-GGTT
* * * * * *
512 CCTTAAAGTATTCAAGACGATCCAATCCTTCAAGCAAATTTTCGAGCAATACATGCTCAGGAAGT
65 CCTTAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTTCGAACATTACATGCTCAGGAAAT
* * * * * *
577 CGTATCATTTGGTCTAAAAAGTTTGTCA-TTTGAAAACTAGTTTTGGCCTTTGAATTAAAATCTT
130 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACTT
* * *
641 ATTTATGCGACAATTGTTTCTC
195 ATTTACGTGAGAATTG-TTCTC
* * *
663 TCTTGGTTGTTAGACGAACTTCCGAACTTGTCAAACTTTTACGGGTTCTTTTTTTAAATCTGGTT
1 TCTTGGTTCTTAGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTC-TTTTATAAATCTGGTT
* * * * *
728 CCTTAAAGTGTTCAAGACAATCTATTCCTTCGAGTAATTTTTCGAACATT-CATGC-GAGGGAAA
65 CCTTAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTTCGAACATTACATGCTCA-GGAAA
* * *
791 TCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGATCTTTCAATTAAAAACT
129 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACT
* *
856 TATATACGTGGGAATTGTGTCTC
194 TATTTACGTGAGAATTGT-TCTC
* * * * * *
879 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCGACCTTTTAAGAGTTCTTTTATAACTTTGGTTC
1 TCTTGGTTCTTAGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATCTGGTTC
* * * * * * *
944 CTTAGAGTATTCAAGATGATCCAAACCTTCGAGTAATTTTCCTAACATTACACGCTCAGGAAGTC
66 CTTAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTTCGAACATTACATGCTCAGGAAATC
* * * * *
1009 ACACCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTCTTGGCCTTTGAACTAAAAACTTA
131 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACTTA
*
1074 TTTACATGAGAATTGCTTCTC
196 TTTACGTGAGAATTG-TTCTC
* * * * * * * * *
1095 TCTCGGTTGTTAGAGGAGCTTCCGAACTTGTAAAATTTTTACTAGTTCTTTTTTAAATTCT-ATT
1 TCTTGGTTCTTAGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAA-TCTGGTT
* * * * * *
1159 CCTTAAAGTGTTCAAAACGATCCATTCCTTCGAGTAA-TTTTCTGAACATTCCATGC-GACGAAA
65 CCTTAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTTC-GAACATTACATGCTCA-GGAA
* * *
1222 ATCGCATCATTCGGTCTAAATAGTTTTTCATTTTGTAAACATGTTTTGACCTT
128 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGACCTT
1275 GGTTCTTGGA
Statistics
Matches: 502, Mismatches: 99, Indels: 21
0.81 0.16 0.03
Matches are distributed among these distances:
214 1 0.00
215 139 0.28
216 357 0.71
217 5 0.01
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (215 bp):
TCTTGGTTCTTAGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATCTGGTTC
CTTAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTTCGAACATTACATGCTCAGGAAATC
GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACTTA
TTTACGTGAGAATTGTTCTC
Found at i:1341 original size:16 final size:18
Alignment explanation
Indices: 1315--1347 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
1305 ACTTTTACGA
1315 GTTCATTTAAAG-ATTCG
1 GTTCATTTAAAGTATTCG
1332 GTTC-TTTAAAGTATTC
1 GTTCATTTAAAGTATTC
1348 AAGACGGTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.27, C:0.12, G:0.15, T:0.45
Consensus pattern (18 bp):
GTTCATTTAAAGTATTCG
Found at i:1646 original size:216 final size:216
Alignment explanation
Indices: 1272--2949 Score: 1805
Period size: 216 Copynumber: 7.8 Consensus size: 216
1262 ATGTTTTGAC
* *
1272 CTTGGTTCTTGGACGAACTTCCGAACATT-TCAAACTTTTACGAGTTCATTTA-AAGATTCGGTT
1 CTTGGTTGTTGGACGAACTTCCGAAC-TTGTCAAACTTTTACGAGTTCTTTTATAA-ATTCGGTT
* * * * *
1335 CTTTAAAGTATTCAAGACGGTCCAATCCTTCAAGCAATTTTTCGAACATTACATGCTCAGGAAGT
64 CCTTAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTTCGAACATTACATGCTCGGGAAGT
* * * **
1400 CGCATC-TTTCGGTATAAAAAGTTTGTCATTTTG-AATTTAAGTTTTGGCCTTTGAATTAAAAAC
129 CGCATCATTT-GGTCTAAATATTTTGTCATTTTGTAA-ACAAGTTTTGGCCTTTGAATTAAAAAC
* *
1463 TTATTTACGTGACAATTGTTTCTCT
192 TTATTTACATGAGAATTGTTTCTCT
*
1488 CTTGGTTGTTAGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTCC
1 CTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTCC
* ** * * * * * *
1553 TTAAAGTATTCAAGCCGATATAAACCTTTGAGCAA-TTTTCTAAACATTACATGCTGGGGAAGTT
66 TTAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTTC-GAACATTACATGCTCGGGAAGTC
* *
1617 GCATCATTTGATCTAACA-ATTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTGAAAACTT
130 GCATCATTTGGTCTAA-ATATTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTT
*
1681 ATTTATATGAGAATTGTTTCTCT
194 ATTTACATGAGAATTGTTTCTCT
* *
1704 CTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTCT-TATA-TCGGGTT
1 CTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTT-TATAAATTC-GGTT
* * * * * * * ** *
1767 CCTTAAAATGTTCAAGACAATCTATTCCTTTGAGTAATTTTTCGAACATT-CAACGCGAGGGAAA
64 CCTTAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTTCGAACATTAC-ATGCTCGGGAAG
* * * *
1831 TCACATCATTTGCTCTAAATAGTTTT-TCATTTTGCAAACAAGTTTTGACCTTTGAATTAAAAAC
128 TCGCATCATTTGGTCTAAATA-TTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAAC
** *
1895 TTATTTATGTGAGAATTGTTTCTCC
192 TTATTTACATGAGAATTGTTTCTCT
* *
1920 CTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTGTAAA-TCTGGTTC
1 CTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTC-GGTTC
* * ** * * * * *
1984 CTTAAAATGTTCAAGATAATCCATTCATTCGAGTAATTTTTCGAATATTCCATGC-CAGGGAAAT
65 CTTAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTTCGAACATTACATGCTC-GGGAAGT
* * ** * * * *
2048 CGCATCATTTAGTCTAAATAGTTTT-TCATTTTGTAAACAAGTTCTGATCATTAAATGACAAACT
129 CGCATCATTTGGTCTAAATA-TTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACT
* * *
2112 TATTTACGTGAGAATTATGTCTCT
193 TATTTACATGAGAATTGTTTCTCT
* * * * * *
2136 CTTGGTTCTTGGACGTACTTCCAAACTTGTCGAACTTTTACGAGTTCTTTTATAACTTCGGTTCG
1 CTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTCC
* * *
2201 TTAAAGTGTTCAAGATGATCCAATCCTTCGAGTAATTTTTCGAACATTACACGCTCGGGAAGTCG
66 TTAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTTCGAACATTACATGCTCGGGAAGTCG
* ** *
2266 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTCCTAGCCTTTGAATTAAAAACTTAT
131 CATCATTTGGTCTAAATATTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTAT
2331 TTACATGAGAATTGTTTCTCT
196 TTACATGAGAATTGTTTCTCT
* * * * * * **
2352 CTCGGTTGTCGGAGGAGCTTCCGAACTTGTAAAACTTTTACGAGTTCTTTTTTAAATTCTATTCC
1 CTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTCC
* * * * ** *
2417 TTAAAGTATTCAAAATGATCCATTCCTTCGAGTAA-TTTTCTGAACATTCCATGCGAGGGAAATC
66 TTAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTTC-GAACATTACATGCTCGGGAAGTC
* * ** *
2481 ACATCATTTGGTCTAAATAGTTTT-TCATTTTGTAAACAATTTTTGATCTTTCAATTAAAAACTT
130 GCATCATTTGGTCTAAATA-TTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTT
* * *
2545 ATTTACTTGAGAATTCTGTCTCT
194 ATTTACATGAGAATTGTTTCTCT
* * * * * *
2568 CTTGGATCTTGGACGAACTTTCAAACTTGTCAAAGTTTTACGAGTTCTTTTA-AAGCTTCGGTTC
1 CTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA-ATTCGGTTC
* * * * * **
2632 CTTAAAGTCTTCAAGCCGATCCAATCCTTCTAGCAA-TTTTCTAAACATTACATGCTCAAGAAGT
65 CTTAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTTC-GAACATTACATGCTCGGGAAGT
* * *
2696 CGCATCATTT-GTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGGATTGAAAACTT
129 CGCATCATTTGGTCTAAATATTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTT
*
2760 ATTTATATGAGAATTGTTTCTCT
194 ATTTACATGAGAATTGTTTCTCT
* **
2783 CTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTCT-TAAATTCTATTC
1 CTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTT-TATAAATTCGGTTC
** * * * * * ** * *
2847 CTTAAAGCGTTCTAGACGATTCATTCCTTCGAGTAA-TTTTCAAAACATTCCATGCGAGAGAAAT
65 CTTAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTTC-GAACATTACATGCTCGGGAAGT
*
2911 CCCATCATTTGGTCTAAATAGTTTT-TCATTTTGTAAACA
129 CGCATCATTTGGTCTAAATA-TTTTGTCATTTTGTAAACA
2950 TATTTTAATC
Statistics
Matches: 1237, Mismatches: 199, Indels: 52
0.83 0.13 0.03
Matches are distributed among these distances:
214 3 0.00
215 195 0.16
216 1011 0.82
217 28 0.02
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (216 bp):
CTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTCC
TTAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTTCGAACATTACATGCTCGGGAAGTCG
CATCATTTGGTCTAAATATTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTAT
TTACATGAGAATTGTTTCTCT
Found at i:1929 original size:824 final size:822
Alignment explanation
Indices: 1--7557 Score: 7037
Period size: 824 Copynumber: 9.0 Consensus size: 822
*
1 TTGTAAACAAGTTTTGATCTTTCAATTAAAAACTTATTTACGTGAGAATTCTG--TCTCTTGGTT
1 TTGTAAACAAGTTTTGATCTTTCAATTAAAAACTTATTTACGTGAGAATTGTGTCTCTCTTGGTT
* * * *
64 CTTGGACGAACTTTCGAACTTGTCAAAGTTTTATGAGTTCTTTTAAAGCTTCGGTTCCTTAAAGT
66 CTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATA-C-TCGGTTCCTTAAAGT
* * * * *
129 ATTCAAGCCGATCCAATCCTTCGAGCAATTTTTTGAACATTACATGCTCAAGAAGTCGCATCATT
129 ATTCAAGACGATCCAATCCTTCGAGTAATTTTTCGAACATTACACGCTCAGGAAGTCGCATCATT
*
194 TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTGAAAACTTATTTATATG
194 TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTATATG
*
259 AGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTC
259 AGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTT
** * * **
324 TTAAATTCGGTTCCTTAAAGTGTTCTAGACGATCCATTCTTTCGAGTAATTTTCAAAACATTCCA
324 TTAAATTCTATTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTCTGAACATTCCA
* * *
389 TGAGAGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTATAAACATATTTTGATCTTGG
389 TGCGAGA-AAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACATGTTTTGATCTTGG
* * *
454 TTCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTACAA-CTTCGGTTCCTTAA
453 TTCTTGGACGAACTTCCGAACATTTCAAACTTTTACGAGTTCATTTA-AAGATTCGGTTCCTTAA
* * * *
518 AGTATTCAAGACGATCCAATCCTTCAAGCAAATTTTCGAGCAATACATGCTCAGGAAGTCGTATC
517 AGTATTCAAGACGATCCAATCCTTCAAGCAATTTTTCGAACATTACATGCTCAGGAAGTCGCATC
* *
583 ATTTGGTCTAAAAAGTTTGTCA-TTTGAAAACT-AGTTTTGGCCTTTGAATTAAAATCTTATTTA
582 ATTTGGTATAAAAAGTTTGTCATTTTGAAAACTAAGTTTTGGCCTTTGAATTAAAAACTTATTTA
* *
646 TGCGACAATTGTTTCTCTCTTGGTTGTTAGACGAACTTCCGAACTTGTCAAACTTTTACGGGTTC
647 TGCGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTC
* * *
711 TTTTTTTAAATCTGGTTCCTTAAAGTGTTCAAGACAATCTATTCCTTCGAGTAATTTT-TCGAAC
712 -TTTTTTAAATCTGGTTCCTTAAAGTATTCAAGACAATATAATCCTTCGAGTAATTTTCT-GAAC
775 ATT-CATGCGAGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATT
775 ATTCCATGCGAGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATT
* *
822 TTGTAAACAAGTTTTGATCTTTCAATTAAAAACTTATATACGTGGGAATTGTGTCTCTCTTGGTT
1 TTGTAAACAAGTTTTGATCTTTCAATTAAAAACTTATTTACGTGAGAATTGTGTCTCTCTTGGTT
* * * * *
887 CTTGGACGAACTTCCGAACTTGTCGACCTTTTAAGAGTTCTTTTATAACTTTGGTTCCTTAGAGT
66 CTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT-AC-TCGGTTCCTTAAAGT
* * * * * *
952 ATTCAAGATGATCCAAACCTTCGAGTAATTTTCCTAACATTACACGCTCAGGAAGTCACACCATT
129 ATTCAAGACGATCCAATCCTTCGAGTAATTTTTCGAACATTACACGCTCAGGAAGTCGCATCATT
* * *
1017 TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTCTTGGCCTTTGAACTAAAAACTTATTTACATG
194 TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTATATG
* * * * * * * *
1082 AGAATTGCTTCTCTCTCGGTTGTTAGAGGAGCTTCCGAACTTGTAAAATTTTTACTAGTTCTTTT
259 AGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTT
*
1147 TTAAATTCTATTCCTTAAAGTGTTCAAAACGATCCATTCCTTCGAGTAATTTTCTGAACATTCCA
324 TTAAATTCTATTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTCTGAACATTCCA
* *
1212 TGCGACGAAAATCGCATCATTCGGTCTAAATAGTTTTTCATTTTGTAAACATGTTTTGACCTTGG
389 TGCGA-GAAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACATGTTTTGATCTTGG
*
1277 TTCTTGGACGAACTTCCGAACATTTCAAACTTTTACGAGTTCATTTAAAGATTCGGTTCTTTAAA
453 TTCTTGGACGAACTTCCGAACATTTCAAACTTTTACGAGTTCATTTAAAGATTCGGTTCCTTAAA
*
1342 GTATTCAAGACGGTCCAATCCTTCAAGCAATTTTTCGAACATTACATGCTCAGGAAGTCGCATC-
518 GTATTCAAGACGATCCAATCCTTCAAGCAATTTTTCGAACATTACATGCTCAGGAAGTCGCATCA
**
1406 TTTCGGTATAAAAAGTTTGTCATTTTG-AATTTAAGTTTTGGCCTTTGAATTAAAAACTTATTTA
583 TTT-GGTATAAAAAGTTTGTCATTTTGAAAACTAAGTTTTGGCCTTTGAATTAAAAACTTATTTA
* * *
1470 CGTGACAATTGTTTCTCTCTTGGTTGTTAGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTC
647 TGCGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTC
* * * * * * *
1535 TTTTATAAAT-TCGGTTCCTTAAAGTATTCAAGCCGATATAAACCTTTGAGCAATTTTCTAAACA
712 TTTTTTAAATCT-GGTTCCTTAAAGTATTCAAGACAATATAATCCTTCGAGTAATTTTCTGAACA
* * * *
1599 TTACATGCTG-GGGAAGTTGCATCATTTGATCTAACA-A-TTTTGTCATT
776 TTCCATGC-GAGGGAAATCGCATCATTTGGTCTAA-ATAGTTTT-TCATT
** * * ** *
1646 TTGTAAACAAGTTTTGGCCTTTGAATTGAAAACTTATTTATATGAGAATTGTTTCTCTCTTGGTT
1 TTGTAAACAAGTTTTGATCTTTCAATTAAAAACTTATTTACGTGAGAATTGTGTCTCTCTTGGTT
* * *
1711 GTTGGACGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTCTTATA-TCGGGTTCCTTAAAA
66 CTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTC-TT-TTATACTC-GGTTCCTTAAAG
* * * * * * * *
1775 TGTTCAAGACAATCTATTCCTTTGAGTAATTTTTCGAACATT-CAACGC-GAGGGAAATCACATC
128 TATTCAAGACGATCCAATCCTTCGAGTAATTTTTCGAACATTAC-ACGCTCA-GGAAGTCGCATC
* * * *
1838 ATTTGCTCTAAATAGTTTTTCATTTTGCAAACAAGTTTTGACCTTTGAATTAAAAACTTATTTAT
191 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTAT
* * *
1903 GTGAGAATTGTTTCTCCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCT
256 ATGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCT
* * * ** * *
1968 TTTGTAAA-TCTGGTTCCTTAAAATGTTCAAGATAATCCATTCATTCGAGTAATTTT-TCGAATA
321 TTTTTAAATTCT-ATTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTCT-GAACA
* * * * *
2031 TTCCATGCCAGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTCTGAT
384 TTCCATGCGA-GAAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACATGTTTTGAT
* *** * * * * * *****
2096 CAT--TAAAT-GACAAACTT------ATTT---AC-GTGA-GAATT-ATGTCTCTCTT-GGTT-C
448 CTTGGTTCTTGGACGAACTTCCGAACATTTCAAACTTTTACGAGTTCATTTAAAGATTCGGTTCC
* * * * * ** ** * *
2144 TTGGACGTACTTCCAA-ACTTG-TCGAA-CTTTTACGAGTTCTTTTATAACTTCGGTTCGTTAAA
513 TT-AAAGTA-TT-CAAGAC--GATCCAATC-CTT-CAAG--CAATT-T---TTC-GAACATTACA
* * * * * * ** **
2206 GTGTTCAAGATGATC-CAATC-CTTCG-AGT---AA-TTTTTCGAACATT-ACACGCTCGGGAAG
564 -TGCTCAGGAAG-TCGC-ATCATTTGGTA-TAAAAAGTTTGTC--ATTTTGA-AAACT----AAG
***** * * ** ** ** ** * **
2263 TCGCATCATTTG-GTCTAAATAGTTTGTCATTT-TGTAAACAAGTCCTAGC-CT-TTGAATT-AA
618 TTTTGGCCTTTGAAT-TAAA-A-ACT-T-ATTTATG-CGACAA-TTGTTTCTCTCTTG-GTTGTT
** ** * * * *** * ** * *
2323 AAACTTATTTACATGAGAATTGTTTCTCTCTCGGTTGTCGGAGGAGCTTCCGAACTTGTAAAAC-
675 GGACGAACTT-C-CGA-ACTTG--TCAAACT---TT-T---ACGAG-TT-C--TTTTTTAAATCT
* * **** * * ** *** * *
2387 --TT--TTACGAGTTCTTTTTTA-AATTCTATTCCTTAAAGT-ATTCAAAATGATCCATTCC-TT
724 GGTTCCTTA-AAG-TATTCAAGACAA-TATAATCCTTCGAGTAATT--TTCTGA-ACATTCCATG
* * **
2445 CGA-GTAATTTTCTGAACATTCCATGCGAGGGAAATCACATCATTTGGTCTAAATAGTTTTTCAT
783 CGAGGGAA--ATC-G--CA-T-CAT---TTGG---T--C-T-A---------AATAGTTTTTCAT
2509 T
822 T
* * * *
2510 TTGTAAACAATTTTTGATCTTTCAATTAAAAACTTATTTACTTGAGAATTCTGTCTCTCTTGGAT
1 TTGTAAACAAGTTTTGATCTTTCAATTAAAAACTTATTTACGTGAGAATTGTGTCTCTCTTGGTT
* * * *
2575 CTTGGACGAACTTTCAAACTTGTCAAAGTTTTACGAGTTCTTTTAAAGCTTCGGTTCCTTAAAGT
66 CTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATA-C-TCGGTTCCTTAAAGT
* * * * * * *
2640 CTTCAAGCCGATCCAATCCTTCTAGCAA-TTTTCTAAACATTACATGCTCAAGAAGTCGCATCAT
129 ATTCAAGACGATCCAATCCTTCGAGTAATTTTTC-GAACATTACACGCTCAGGAAGTCGCATCAT
* *
2704 TT-GTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGGATTGAAAACTTATTTATAT
193 TTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTATAT
*
2768 GAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTT
258 GAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTT
* * * * **
2833 CTTAAATTCTATTCCTTAAAGCGTTCTAGACGATTCATTCCTTCGAGTAATTTTCAAAACATTCC
323 TTTAAATTCTATTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTCTGAACATTCC
* * *
2898 ATGCGAGAGAAATCCCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACATATTTTAATCTTG
388 ATGCGAGA-AAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACATGTTTTGATCTTG
* * * * *
2963 ATTCTTGGACAAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTACAA-CTTCGGTTCCTTA
452 GTTCTTGGACGAACTTCCGAACATTTCAAACTTTTACGAGTTCATTTA-AAGATTCGGTTCCTTA
* * **
3027 AAGTATTGAAGACGATCCAATCATTCAAGCAAATTTTT-GAACATTACATGCTCAGGAAGTCATA
516 AAGTATTCAAGACGATCCAATCCTTCAAGC-AATTTTTCGAACATTACATGCTCAGGAAGTCGCA
*
3091 TCATTTGGTCTAAAAAGTTTGTCA-TTTGAAAACT-AGTTTTGGCCTTTGAATTAAAAACTTATT
580 TCATTTGGTATAAAAAGTTTGTCATTTTGAAAACTAAGTTTTGGCCTTTGAATTAAAAACTTATT
* * *
3154 TATGCGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTTCGAACTTGCCAAATTTTTACGAGT
645 TATGCGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGT
* ** * *
3219 TCTTTTTTAAATCTGGTTCCTTAAAGTGTTCAAGACAATCCATTCCTTCGAGTAATTTTCCGAAC
710 TCTTTTTTAAATCTGGTTCCTTAAAGTATTCAAGACAATATAATCCTTCGAGTAATTTTCTGAAC
*
3284 ATTCCATGCGAGGGAAATTGCATCATTTGGTCTAAATAGTTTTTCATT
775 ATTCCATGCGAGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATT
*
3332 TTGTGAACAAGTTTTGATCTTTCAATTAAAAACTTATTTACGTGAGAATTGTGTCTCTCTTGGTT
1 TTGTAAACAAGTTTTGATCTTTCAATTAAAAACTTATTTACGTGAGAATTGTGTCTCTCTTGGTT
* * * * * *
3397 TTTCGATGAACTTCTGAACTTGTCGAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGT
66 CTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT-AC-TCGGTTCCTTAAAGT
* ** *
3462 ATTCAAGATGATCCAATCCTTCGAGTAATTTTTCGAACATTACACGCTCAGGAAGTTTCAACCAT
129 ATTCAAGACGATCCAATCCTTCGAGTAATTTTTCGAACATTACACGCTCAGGAAGTCGC-ATCAT
* * * *
3527 TTGGTCTAAATAGTTCGTCATTTTGTAAACAAGTCTTGGCATTTGAATTAAAAACTTATTTACAT
193 TTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTATAT
* ** * * * * *
3592 GAGAATTGTTTCTCTCTCGGTTGTCAGAGGAGCTTCCGAACTTGTAAAACTTTTATGGGTTCTTT
258 GAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTT
* *
3657 TTTAAATTCTATTCCTTAAAGTGTTCAAAACGATCCATTCCTTCGAGTAATTTTCTGAACATTCA
323 TTTAAATTCTATTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTCTGAACATTCC
*
3722 ATGTGACGAAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACATGTTTTGATCTTG
388 ATGCGA-GAAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACATGTTTTGATCTTG
*
3787 GTTCTTGGACGAACTTCCGAACGTTTCAAACTTTTACGAGTTCATTTAAAGATTCGGTTCCTTAA
452 GTTCTTGGACGAACTTCCGAACATTTCAAACTTTTACGAGTTCATTTAAAGATTCGGTTCCTTAA
* *
3852 AGTATTCAAGACGATCCAATCCTTCAAGTAATTTTTCGAACATTACATGCTCAGGAAATCGCATC
517 AGTATTCAAGACGATCCAATCCTTCAAGCAATTTTTCGAACATTACATGCTCAGGAAGTCGCATC
* * * *
3917 ATTCGGTATAAAAAGTTTGTCATTTTGAAAA-TAAATTTTGGTCTTTGAAGTAAAAACTTATTTA
582 ATTTGGTATAAAAAGTTTGTCATTTTGAAAACTAAGTTTTGGCCTTTGAATTAAAAACTTATTTA
* * *
3981 CGTGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTA
647 TGCGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTC
* * * *
4046 TTTTATAAAT-TCGGTTCCTTAAAGTATTCAAGCCAATATAATCCTTTGAGCAATTTTCTGAACA
712 TTTTTTAAATCT-GGTTCCTTAAAGTATTCAAGACAATATAATCCTTCGAGTAATTTTCTGAACA
* ** * * * *
4110 TTTCATGCTTGGGAAGTTGCGTCATTTGATCTAACA-A-TTTTGTCATT
776 TTCCATGCGAGGGAAATCGCATCATTTGGTCTAA-ATAGTTTT-TCATT
** * ** *
4157 TTGTAAACAAGTTTTGGCCTTTGAA-TAGAAAACTTATTTATATGAGAATTGTTTCTCTCTTGGT
1 TTGTAAACAAGTTTTGATCTTTCAATTA-AAAACTTATTTACGTGAGAATTGTGTCTCTCTTGGT
* *
4221 TGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTCTTATA-TCCGGTTCCATAAA
65 TCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTC-TT-TTATACT-CGGTTCCTTAAA
* * * * * * * * * * * * * *
4285 ATGTTCATGACAATCTATTTCTTCAAGTAATTTTCCAAACATT-CAATGC-GAGGGAAATTGCAT
127 GTATTCAAGACGATCCAATCCTTCGAGTAATTTTTCGAACATTAC-ACGCTCA-GGAAGTCGCAT
* * * * *
4348 CATTTGCTCTAAATAGTTAT-TCATTTTGTAAAAAAGTTTTGACCTTTGAATGAAAAGCTTATTT
190 CATTTGGTCTAAATAGTT-TGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTT
* *
4412 ATGTGAGAATTGTTTCTCCCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT
254 ATATGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT
* * * **
4477 CTTTTTTAAATCCGT-TTCCTTAAAATGTTCATGATAATCCATTCCTTCGAGTAATTTT-TCGAA
319 CTTTTTTAAATTC-TATTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTCT-GAA
* * * *
4540 CATTCCATGCGAGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTCTG
382 CATTCCATGCGA-GAAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACATGTTTTG
*** ***** ** * * **** * ** *
4605 ATCATTAAATGAAAAACTTATTTACGTGAGA-ATTATGTCTCTCTT--G-GTTC-TTGGATGAAC
446 ATC-TTGGTTCTTGGACGAACTT-C-CGA-ACATT-TCAAACTTTTACGAGTTCATTTAAAG-A-
**** * * * * * * ** * * **** * * *
4665 TTCCAAACTTGTCCAACTTTTACGAGTTCTTTTACAACTTCGGTTCCTTAAAGTATTCAAGACGA
504 TTCGGTTCCT-T-AAAGTATT-CAAG-AC-GATCCAA--TC-CTTCAAGCAATTTTTCGA-AC-A
* * * * * * * **
4730 -TCCAATCCTTGATGCAATTTTTCGAACACTACATGCTTAGTAAGTCGTATCA-TTTGGTCTAAA
559 TTAC-ATGC-TCA-GGAA---GTCG--CA-T-CAT--TTGGT-A-T--AAAAAGTTT-GTC----
*
4793 ATTTTTGTCATTTGAAAACT-AGTTTTGGCCTTTGAATTAAAAACTTATTTATGCGACAATTGTT
603 A-TTTTG--A---AA--ACTAAGTTTTGGCCTTTGAATTAAAAACTTATTTATGCGACAATTGTT
*
4857 TCTCTCTTGGTTGTTGG-CAAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATCTG
660 TCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATCTG
* * *
4921 GTTCCTTAAAGTGTTCAAGACAATCAT--TCCTTCGAGTAATTTTCGGAACATTCCATGGGAGGG
725 GTTCCTTAAAGTATTCAAGACAAT-ATAATCCTTCGAGTAATTTTCTGAACATTCCATGCGAGGG
*
4984 AAATCGCATCATTTGGTCTAAATAGTTTGTCATT
789 AAATCGCATCATTTGGTCTAAATAGTTTTTCATT
*
5018 TTGTAAACAAGTTTTGATCTTTCAATTAAAAACTTATTTACGTGAGAATTGTGTCTCTCTTGCTT
1 TTGTAAACAAGTTTTGATCTTTCAATTAAAAACTTATTTACGTGAGAATTGTGTCTCTCTTGGTT
* * * * *
5083 CTTGGACGAACTTTCAAACTTGTCGAACTTTTACGAGTTCTTTTATAACTTCGGTTCCCTGAAGT
66 CTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT-AC-TCGGTTCCTTAAAGT
* * * *
5148 ATTCAAGATGATCCAATCCTTCGAGTAATTTTTCGAACTTTATACGCTCAGGAAGTCGCAACATT
129 ATTCAAGACGATCCAATCCTTCGAGTAATTTTTCGAACATTACACGCTCAGGAAGTCGCATCATT
* * *
5213 TGGTCTAAATAGTTTGTCATTTTGTAAACAGGTCTTGGCCTTTGAATTAAAAACTTATTTACATG
194 TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTATATG
* * * * * * * *
5278 AGAATTGTTTCTCTCTCGGTTGTCGGAGGAGCTTTCGAACTTGTAAAACTTTTATGAGTTCGTTT
259 AGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTT
** * * * ** * *
5343 TTAAATTAAATTCCTTAAAGCGTTCAAAATGATCCATTCCTTCGAGTAATTTTCAAAACATTTCG
324 TTAAATTCTATTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTCTGAACATTCCA
**
5408 TGCGAGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACACATTTTGATCTTGG
389 TGCGAGA-AAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACATGTTTTGATCTTGG
* * * * * * * * *
5473 TTCTTGGATGAACTTTCGATCTTTTAAAACTTTTACGAGTTCTTTTACAA-CTTTGGTTTCTTAA
453 TTCTTGGACGAACTTCCGAACATTTCAAACTTTTACGAGTTCATTTA-AAGATTCGGTTCCTTAA
* * * *
5537 AGTATTCAAGACGATCCAATCCTTCAAACAATTTTTTGAACATTACATGCTCAGGAAGTCGTACC
517 AGTATTCAAGACGATCCAATCCTTCAAGCAATTTTTCGAACATTACATGCTCAGGAAGTCGCATC
* *
5602 ATTTGGTCTAAAAAGTTTGTCA-TTTGAAAACT-AGTTTTGTCCTTTGAATTAAAAACTTATTTA
582 ATTTGGTATAAAAAGTTTGTCATTTTGAAAACTAAGTTTTGGCCTTTGAATTAAAAACTTATTTA
*
5665 TGCGACAATTGTTTCTCTCTTGGTTGTTGGACTAACTTCCGAACTTGTCAAACTTTTACGAGTTC
647 TGCGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTC
* * * * *
5730 TTTTTTAAATCTGGTTCCTTAAAGTGTTCAAGA-AA-ATCCATTCTTCCGAGTTATTTTCCGAAC
712 TTTTTTAAATCTGGTTCCTTAAAGTATTCAAGACAATAT-AATCCTT-CGAGTAATTTTCTGAAC
*
5793 ATTCCATGCGAGGGAAATCACATCATTTGGTCTAAATAGTTTTTCATT
775 ATTCCATGCGAGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATT
* *
5841 TTGTAAACAACTTTTGATCTCTCAATTAAAAACTTATTTACGTGAGAATTGTGTCTCTCTTGGTT
1 TTGTAAACAAGTTTTGATCTTTCAATTAAAAACTTATTTACGTGAGAATTGTGTCTCTCTTGGTT
* * *
5906 CTTGGACGAACTTTCGAACTTGTCGAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGT
66 CTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT-AC-TCGGTTCCTTAAAGT
* *
5971 ATTCAAGATGATCCAATCCTTCGAGTAATTTTTCGAACATTACACGCTCAGGAAGTCGCACCATT
129 ATTCAAGACGATCCAATCCTTCGAGTAATTTTTCGAACATTACACGCTCAGGAAGTCGCATCATT
* * * *
6036 TGGTCTAAATAGTTCGTCATTTTGTAAACAAGTCTTGGCATTTGAATTGAAAACTTATTTATATG
194 TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTATATG
* ** * * * *
6101 AGAATTGTTTCTCTCTCGGTTGTCAGAGGAGCTTCCTAACTTGTAAAACTTTTACGAGTTCTTTT
259 AGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTT
* * * * *
6166 TTAAATTTTATTCCTTAAACTGTTAAAAACGATCCATTCCTTTGAGTAATTTTCTGAACATTCCA
324 TTAAATTCTATTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTCTGAACATTCCA
* ** * *
6231 TGCGACGAAAATCTCATCAAATGGTATAAATAGTTTTTCATTTTCTAAACATGTTTTGATCTTGG
389 TGCGA-GAAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACATGTTTTGATCTTGG
*
6296 TTCTTGGACGAACTTCCGAACGTTTCAAACTTTTACGAGTTCATTTAAAGATTCGGTTCCTTAAA
453 TTCTTGGACGAACTTCCGAACATTTCAAACTTTTACGAGTTCATTTAAAGATTCGGTTCCTTAAA
*
6361 GTATTCAAGACGATCCAATCCTTCAAGCAATTTTTCGAACATTACATGCTCAGGAAATCGCATCA
518 GTATTCAAGACGATCCAATCCTTCAAGCAATTTTTCGAACATTACATGCTCAGGAAGTCGCATCA
* * * *
6426 TTCGGTATAAAAAGTTTGTCATTTTGAAAA-TAAATTTTGGTCTTTGAATTAAAAACTTATTTAC
583 TTTGGTATAAAAAGTTTGTCATTTTGAAAACTAAGTTTTGGCCTTTGAATTAAAAACTTATTTAT
* *
6490 GTGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTAT
648 GCGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCT
* * * *
6555 TTTATAAAT-TCGGTTCCTTAAAGTATTCAAGCCAATATAATCCTTTGAGCAATTTTCTGAACAT
713 TTTTTAAATCT-GGTTCCTTAAAGTATTCAAGACAATATAATCCTTCGAGTAATTTTCTGAACAT
* ** * * * *
6619 TACATGCTTGGGAAGTTGCATCATTTGATCT-AATAATTTTGTCATT
777 TCCATGCGAGGGAAATCGCATCATTTGGTCTAAATAGTTTT-TCATT
** * * ** * *
6665 TTGTAAACAAGTTTTGGCCTTTGAATTGAAAACTTATTTATATAAGAATTGTTTCTCTCTTGGTT
1 TTGTAAACAAGTTTTGATCTTTCAATTAAAAACTTATTTACGTGAGAATTGTGTCTCTCTTGGTT
* ** * * *
6730 GTTGGACGAACTTCCGAACTTGTCAAACTTTTACGTTTTCTTTCT-TAAATCTGGTTCCATAAAA
66 CTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTT-TAT-ACTC-GGTTCCTTAAAG
* * * * * * * *
6794 TGTTCAAGACAATCTATTCCTTCGAGTAATTTTCCGAACATT-CAATGC-GAGGGAAAAT-GCAT
128 TATTCAAGACGATCCAATCCTTCGAGTAATTTTTCGAACATTAC-ACGCTCA-GG-AAGTCGCAT
* * * *
6856 CATTTGCTCTAAGTAGTTTTTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACTTATTTA
190 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTA
* *
6921 TGTGAGAATTGTTTCTC-CTTTGGTTGTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTT
255 TATGAGAATTGTTTCTCTC-TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT
** * ** * * *
6985 CTTTTTTAAATTCGGTTCCTTAAAATGTTCAAGATAATCCTTTCCTACGAGTAATTTTCCGAACA
319 CTTTTTTAAATTCTATTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTCTGAACA
* * * * *
7050 TTCCATGCGAGGGAAATCGCATCATTTAGTCTAAATCGTTTTTCATTTTGTAAACAAGTTCTGAT
384 TTCCATGCGA-GAAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACATGTTTTGAT
* *** **** * * * *
7115 CAT--TAAAT-GA-GAAACTTATTTACGTGTGAATTATATCTCTTT-TG-GTTCTTGGATGAACT
448 CTTGGTTCTTGGACG-AACTTCCGAACAT-T---TCA-AACT-TTTACGAGTTC----AT----T
** * * * * * * *
7174 TCCAAACTTGTCGAACTT--TTACGAGTTCTTTTACGACTTCGGTTCCTTAAAGT-ATTCAAGAC
498 T--AAAGAT-TCG--GTTCCTTA-AAG-T-ATTCAAGA---C-GATCC---AA-TCCTTC-A-A-
** ** * * *
7236 GATCCAATCCTTCATGCAATTTTTCGAACATTACATGCTCAGGAAGTCGTATCATTCGGTCTAAA
544 G---CAATTTTTC--G-AA-CATT---ACA-----TGCTCAGGAAGTCGCATCATTTGGTATAAA
7301 AAGTTTGTCA-TTTGAAAACT-AGTTTTGGCCTTTGAATTAAAAACTTATTTATGCGACAATTGT
594 AAGTTTGTCATTTTGAAAACTAAGTTTTGGCCTTTGAATTAAAAACTTATTTATGCGACAATTGT
7364 TTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATCT
659 TTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATCT
* * *
7429 GGTTCCTTAAAGTGTTCAAGACAATCAT--TCTTTCGAGT-ATTTTTTCGAACATTCCATGCGAG
724 GGTTCCTTAAAGTATTCAAGACAAT-ATAATCCTTCGAGTAATTTTCT-GAACATTCCATGCGAG
*
7491 GTAAATCGCATCATTTGGTCTAAATAGTTTTTCATT
787 GGAAATCGCATCATTTGGTCTAAATAGTTTTTCATT
7527 TTGTAAACAAGTTTTGATCTTTCAATTAAAA
1 TTGTAAACAAGTTTTGATCTTTCAATTAAAA
Statistics
Matches: 5466, Mismatches: 947, Indels: 605
0.78 0.13 0.09
Matches are distributed among these distances:
807 2 0.00
808 8 0.00
809 10 0.00
810 13 0.00
811 6 0.00
812 2 0.00
813 3 0.00
814 1 0.00
815 9 0.00
816 2 0.00
817 6 0.00
818 9 0.00
819 13 0.00
820 8 0.00
821 135 0.02
822 266 0.05
823 1196 0.22
824 1636 0.30
825 373 0.07
826 35 0.01
827 17 0.00
828 19 0.00
829 5 0.00
830 6 0.00
831 5 0.00
832 1 0.00
833 7 0.00
834 16 0.00
835 12 0.00
836 14 0.00
837 14 0.00
838 32 0.01
839 10 0.00
840 9 0.00
841 13 0.00
842 3 0.00
843 10 0.00
844 5 0.00
845 14 0.00
846 12 0.00
847 15 0.00
848 28 0.01
849 17 0.00
850 10 0.00
851 15 0.00
852 10 0.00
853 3 0.00
854 6 0.00
855 5 0.00
856 12 0.00
857 10 0.00
858 10 0.00
859 16 0.00
860 29 0.01
861 434 0.08
862 147 0.03
863 427 0.08
864 208 0.04
865 11 0.00
866 9 0.00
867 5 0.00
868 12 0.00
869 11 0.00
870 2 0.00
871 4 0.00
872 8 0.00
874 2 0.00
875 4 0.00
876 6 0.00
877 12 0.00
878 10 0.00
879 8 0.00
880 3 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (822 bp):
TTGTAAACAAGTTTTGATCTTTCAATTAAAAACTTATTTACGTGAGAATTGTGTCTCTCTTGGTT
CTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATACTCGGTTCCTTAAAGTAT
TCAAGACGATCCAATCCTTCGAGTAATTTTTCGAACATTACACGCTCAGGAAGTCGCATCATTTG
GTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTATATGAG
AATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTT
AAATTCTATTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTCTGAACATTCCATG
CGAGAAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACATGTTTTGATCTTGGTTC
TTGGACGAACTTCCGAACATTTCAAACTTTTACGAGTTCATTTAAAGATTCGGTTCCTTAAAGTA
TTCAAGACGATCCAATCCTTCAAGCAATTTTTCGAACATTACATGCTCAGGAAGTCGCATCATTT
GGTATAAAAAGTTTGTCATTTTGAAAACTAAGTTTTGGCCTTTGAATTAAAAACTTATTTATGCG
ACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTT
TTAAATCTGGTTCCTTAAAGTATTCAAGACAATATAATCCTTCGAGTAATTTTCTGAACATTCCA
TGCGAGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATT
Found at i:2506 original size:648 final size:645
Alignment explanation
Indices: 1271--2949 Score: 2088
Period size: 648 Copynumber: 2.6 Consensus size: 645
1261 CATGTTTTGA
* *
1271 CCTTGGTTCTTGGACGAACTTCCGAACATT-TCAAACTTTTACGAGTTCATTTAAAGAT-TCGGT
1 CCTTGGTTCTTGGACGAACTTTCGAAC-TTGTCAAACTTTTACGAGTTC-TTTTAA-ATCTCGGT
* *
1334 TCTTTAAAGTATTCAAGACGGTCCAATCCTTCAAGCAATTTTTCGAACATTACATGCTCAGGAAG
63 TCCTTAAAGTATTCAAGACGATCCAATCCTTCAAGCAATTTTTCGAACATTACATGCTCAGGAAG
* * ** *
1399 TCGCATC-TTTCGGTATAAAAAGTTTGTCATTTTG-AATTTAAGTTTTGGCCTTTGAATTAAAAA
128 TCGCATCATTT--GTCTAAATAGTTTGTCATTTTGTAA-ACAAGTTTTGGCCTTTGAA-TGAAAA
* *
1462 CTTATTTACGTGACAATTGTTTCTCTCTTGGTTGTTAGACGAACTTCCGAACTTGTCAAACTTTT
189 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTT
* * * * * *
1527 ACGAGTTCTTTTATAAATTCGGTTCCTTAAAGTATTCAAGCCGATATAAACCTTTGAGCAATTTT
254 ACGAGTTCTTTTATAAATTCGGTTCCTTAAAGTGTTCAAGACGATACAATCCTTCGAGTAATTTT
* * * * *
1592 CTAAACATTACATGCTGGGGAAGTTGCATCATTTGATCTAACA-ATTTTGTCATTTTGTAAACAA
319 CAAAACATTACATGCTAGGGAAGTCGCATCATTTGGTCTAA-ATAGTTTGTCATTTTGTAAACAA
** * * * * *
1656 GTTTTGGCCTTTGAATTGAAAACTTATTTATATGAGAATTGTTTCTCTCTTGGTTGTTGGACGAA
383 GTCCTAGCCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTCGGTTGTCGGACGAA
* * * * * *
1721 CTTCCGAACTTGTCAAACTTTTATGAGTTCTTTCTTATATCGGGTTCCTTAAAATGTTCAAGACA
448 CTTCCGAACTTGTAAAACTTTTACGAGTTCTTTCTTAAATCGGATTCCTTAAAATATTCAAAACA
* *
1786 ATCTATTCCTTTGAGTAATTTTTCGAACATTCAACGCGAGGGAAATCACATCATTTGCTCTAAAT
513 ATCCATTCCTTCGAGTAATTTTTCGAACATTCAACGCGAGGGAAATCACATCATTTGCTCTAAAT
* * *
1851 AGTTTTTCATTTTGCAAACAAGTTTTGACCTTTGAATTAAAAACTTATTTA-TGTGAGAATTGTT
578 AGTTTTTCATTTTGCAAACAAGTTTTGACCTTTCAATTAAAAACTTATTTACT-TGAGAATTCTG
1915 TCTC
642 TCTC
*
1919 CCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTGTAAATCT-GGTT
1 CCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTC-TTT-TAAATCTCGGTT
* * ** * * * * * * *
1983 CCTTAAAATGTTCAAGATAATCCATTCATTCGAGTAATTTTTCGAATATTCCATGC-CAGGGAAA
64 CCTTAAAGTATTCAAGACGATCCAATCCTTCAAGCAATTTTTCGAACATTACATGCTCA-GGAAG
* * ** * *
2047 TCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTCTGATCATTAAATGACAAACT
128 TCGCATCATTT-GTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATGA-AAACT
* * * * * *
2112 TATTTACGTGAGAATTATGTCTCTCTTGGTTCTTGGACGTACTTCCAAACTTGTCGAACTTTTAC
191 TATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * *
2177 GAGTTCTTTTATAACTTCGGTTCGTTAAAGTGTTCAAGATGATCCAATCCTTCGAGTAATTTTTC
256 GAGTTCTTTTATAAATTCGGTTCCTTAAAGTGTTCAAGACGATACAATCCTTCGAGTAA-TTTTC
* * *
2242 -GAACATTACACGCTCGGGAAGTCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
320 AAAACATTACATGCTAGGGAAGTCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
* *
2306 CCTAGCCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTCGGTTGTCGGAGGAGCT
385 CCTAGCCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTCGGTTGTCGGACGAACT
* * * **
2371 TCCGAACTTGTAAAACTTTTACGAGTTCTTTTTTAAATTC-TATTCCTTAAAGTATTCAAAATGA
450 TCCGAACTTGTAAAACTTTTACGAGTTCTTTCTTAAA-TCGGATTCCTTAAAATATTCAAAACAA
* * *
2435 TCCATTCCTTCGAGTAA-TTTTCTGAACATTCCATGCGAGGGAAATCACATCATTTGGTCTAAAT
514 TCCATTCCTTCGAGTAATTTTTC-GAACATTCAACGCGAGGGAAATCACATCATTTGCTCTAAAT
* * *
2499 AGTTTTTCATTTTGTAAACAATTTTTGATCTTTCAATTAAAAACTTATTTACTTGAGAATTCTGT
578 AGTTTTTCATTTTGCAAACAAGTTTTGACCTTTCAATTAAAAACTTATTTACTTGAGAATTCTGT
2564 CTC
643 CTC
* * * * *
2567 TCTTGGATCTTGGACGAACTTTCAAACTTGTCAAAGTTTTACGAGTTCTTTTAAAGCTTCGGTTC
1 CCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTAAATC-TCGGTTC
* * * * *
2632 CTTAAAGTCTTCAAGCCGATCCAATCCTTCTAGCAA-TTTTCTAAACATTACATGCTCAAGAAGT
65 CTTAAAGTATTCAAGACGATCCAATCCTTCAAGCAATTTTTC-GAACATTACATGCTCAGGAAGT
*
2696 CGCATCATTTGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGGATTGAAAACTTA
129 CGCATCATTTGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTT-GAATGAAAACTTA
** *
2761 TTTATATGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGA
193 TTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGA
** * * * *
2826 GTTCTTTCT-TAAATTCTATTCCTTAAAGCGTTCTAGACGATTCATTCCTTCGAGTAATTTTCAA
258 GTTCTTT-TATAAATTCGGTTCCTTAAAGTGTTCAAGACGATACAATCCTTCGAGTAATTTTCAA
* * * * * *
2890 AACATTCCATGCGAGAGAAATCCCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACA
322 AACATTACATGCTAGGGAAGTCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
2950 TATTTTAATC
Statistics
Matches: 874, Mismatches: 138, Indels: 39
0.83 0.13 0.04
Matches are distributed among these distances:
646 10 0.01
647 218 0.25
648 628 0.72
649 18 0.02
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (645 bp):
CCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTAAATCTCGGTTCC
TTAAAGTATTCAAGACGATCCAATCCTTCAAGCAATTTTTCGAACATTACATGCTCAGGAAGTCG
CATCATTTGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATGAAAACTTATTT
ACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT
CTTTTATAAATTCGGTTCCTTAAAGTGTTCAAGACGATACAATCCTTCGAGTAATTTTCAAAACA
TTACATGCTAGGGAAGTCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTCCTAGC
CTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTCGGTTGTCGGACGAACTTCCGAA
CTTGTAAAACTTTTACGAGTTCTTTCTTAAATCGGATTCCTTAAAATATTCAAAACAATCCATTC
CTTCGAGTAATTTTTCGAACATTCAACGCGAGGGAAATCACATCATTTGCTCTAAATAGTTTTTC
ATTTTGCAAACAAGTTTTGACCTTTCAATTAAAAACTTATTTACTTGAGAATTCTGTCTC
Found at i:3432 original size:216 final size:216
Alignment explanation
Indices: 2974--3785 Score: 875
Period size: 216 Copynumber: 3.8 Consensus size: 216
2964 TTCTTGGACA
* * * *
2974 AACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTACAACTTCGGTTCCTTAAAGTATTGAAGA
1 AACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTCCTTAAAGTATTCAAGA
* * * * * **
3039 CGATCCAATCATTCAAGCAAATTTT-TGAACATTACATGCTCAGGAAGTCATATCATTTGGTCTA
66 CGATCCAATCCTTCGAG-TAATTTTCCGAACATTACATGCTCAGGAAATCGCATCATTTGGTCTA
* * * ** * * *
3103 AAAAGTTTGTCA-TTTGAAAACTAGTTTTGGCCTTTGAATTAAAAACTTATTTATGCGACAATTG
130 AATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTG
* *
3167 TTTCTCTCTTGGTTGTTGGACG
195 TTTCTCTCTTGGTTTTTCGACG
* * * * *
3189 AACTTTCGAACTTGCCAAATTTTTACGAGTTCTTTTTTAAA-TCTGGTTCCTTAAAGTGTTCAAG
1 AACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTC-GGTTCCTTAAAGTATTCAAG
* * * * *
3253 ACAATCCATTCCTTCGAGTAATTTTCCGAACATTCCATGC-GAGGGAAATTGCATCATTTGGTCT
65 ACGATCCAATCCTTCGAGTAATTTTCCGAACATTACATGCTCA-GGAAATCGCATCATTTGGTCT
* * *
3317 AAATAGTTTTTCATTTTGTGAACAAGTTTTGATCTTTCAATTAAAAACTTATTTACGTGAGAATT
129 AAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATT
* *
3382 GTGTCTCTCTTGGTTTTTCGATG
194 GTTTCTCTCTTGGTTTTTCGACG
* * * *
3405 AACTTCTGAACTTGTCGAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGA
1 AACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTCCTTAAAGTATTCAAGA
* * * * ** *
3470 TGATCCAATCCTTCGAGTAATTTTTCGAACATTACACGCTCAGGAAGTTTCAACCATTTGGTCTA
66 CGATCCAATCCTTCGAGTAATTTTCCGAACATTACATGCTCAGGAAATCGC-ATCATTTGGTCTA
* * * *
3535 AATAGTTCGTCATTTTGTAAACAAGTCTTG-GCATTTGAATTAAAAACTTATTTACATGAGAATT
130 AATAGTTTGTCATTTTGTAAACAAGTTTTGATC-TTTGAATTAAAAACTTATTTACGTGAGAATT
* * *
3599 GTTTCTCTCTCGG-TTGTCAGAGG
194 GTTTCTCTCTTGGTTTTTC-GACG
* * * * * ** * *
3622 AGCTTCCGAACTTGTAAAACTTTTATGGGTTCTTTTTTAAATTCTATTCCTTAAAGTGTTCAAAA
1 AACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTCCTTAAAGTATTCAAGA
* * * *
3687 CGATCCATTCCTTCGAGTAATTTTCTGAACATT-CAATG-TGACGAAAATCGCATCATTTGGTCT
66 CGATCCAATCCTTCGAGTAATTTTCCGAACATTAC-ATGCTCA-GGAAATCGCATCATTTGGTCT
* *
3750 AAATAGTTTTTCATTTTGTAAACATGTTTTGATCTT
129 AAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTT
3786 GGTTCTTGGA
Statistics
Matches: 491, Mismatches: 94, Indels: 23
0.81 0.15 0.04
Matches are distributed among these distances:
214 9 0.02
215 106 0.22
216 202 0.41
217 174 0.35
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (216 bp):
AACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTCCTTAAAGTATTCAAGA
CGATCCAATCCTTCGAGTAATTTTCCGAACATTACATGCTCAGGAAATCGCATCATTTGGTCTAA
ATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
TTCTCTCTTGGTTTTTCGACG
Found at i:4156 original size:216 final size:216
Alignment explanation
Indices: 3782--5458 Score: 1782
Period size: 216 Copynumber: 7.8 Consensus size: 216
3772 CATGTTTTGA
* *
3782 TCTTGGTTCTTGGACGAACTTCCGAACGTT-TCAAACTTTTACGAGTTCATTTA-AAGATTCGGT
1 TCTTGGTTGTTGGACGAACTTCCGAAC-TTGTCAAACTTTTACGAGTTCTTTTATAA-ATTCGGT
* * *
3845 TCCTTAAAGTATTCAAGACGATCCAATCCTTCAAGTAATTTTTCGAACATTACATGCTCA-GGAA
64 TCCTTAAAGTATTCAAGACAATCCAATCCTTCGAGTAATTTTTCGAACATTTCATGCT-AGGGAA
* * * * * * * * *
3909 ATCGCATCATTCGGTATAAAAAGTTTGTCATTTTGAAAATAAATTTTGGTCTTTGAAGTAAAAAC
128 ATCGCATCATTTGGTCTAAATATTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAAC
*
3974 TTATTTACGTGACAATTGTTTCTC
193 TTATTTACGTGAGAATTGTTTCTC
*
3998 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTATTTTATAAATTCGGTTC
1 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTC
* ** * * * *
4063 CTTAAAGTATTCAAGCCAATATAATCCTTTGAGCAA-TTTTCTGAACATTTCATGCTTGGGAAGT
66 CTTAAAGTATTCAAGACAATCCAATCCTTCGAGTAATTTTTC-GAACATTTCATGCTAGGGAAAT
* * *
4127 TGCGTCATTTGATCTAACA-ATTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAA-TAGAAAAC
130 CGCATCATTTGGTCTAA-ATATTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTA-AAAAC
**
4190 TTATTTATATGAGAATTGTTTCTC
193 TTATTTACGTGAGAATTGTTTCTC
* *
4214 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTCT-TATATCCGGTT
1 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTT-TATAAATTCGGTT
* * * * * * * * * * *
4278 CCATAAAATGTTCATGACAATCTATTTCTTCAAGTAATTTTCCAAACA-TTCAATGCGAGGGAAA
65 CCTTAAAGTATTCAAGACAATCCAATCCTTCGAGTAATTTTTCGAACATTTC-ATGCTAGGGAAA
* * * * * * *
4342 TTGCATCATTTGCTCTAAATAGTTAT-TCATTTTGTAAAAAAGTTTTGACCTTTGAATGAAAAGC
129 TCGCATCATTTGGTCTAAATA-TTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAAC
*
4406 TTATTTATGTGAGAATTGTTTCTC
193 TTATTTACGTGAGAATTGTTTCTC
* * * *
4430 CCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATCCGTTTC
1 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTC
* * * * * * *
4495 CTTAAAATGTTCATGATAATCCATTCCTTCGAGTAATTTTTCGAACATTCCATGCGAGGGAAATC
66 CTTAAAGTATTCAAGACAATCCAATCCTTCGAGTAATTTTTCGAACATTTCATGCTAGGGAAATC
* * ** * * *
4560 GCATCATTTAGTCTAAATAGTTTT-TCATTTTGTAAACAAGTTCTGATCATTAAATGAAAAACTT
131 GCATCATTTGGTCTAAATA-TTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTT
* *
4624 ATTTACGTGAGAATTATGTCTC
195 ATTTACGTGAGAATTGTTTCTC
* * * * * *
4646 TCTTGGTTCTTGGATGAACTTCCAAACTTGTCCAACTTTTACGAGTTCTTTTACAACTTCGGTTC
1 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTC
* * * * * *
4711 CTTAAAGTATTCAAGACGATCCAATCCTT-GATGCAATTTTTCGAACACTACATGCTTA-GTAAG
66 CTTAAAGTATTCAAGACAATCCAATCCTTCGA-GTAATTTTTCGAACATTTCATGC-TAGGGAAA
* * *
4774 TCGTATCATTTGGTCTAAA-ATTTTTGTCA-TTTGAAAACTAGTTTTGGCCTTTGAATTAAAAAC
129 TCGCATCATTTGGTCTAAATA-TTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAAC
* * *
4837 TTATTTATGCGACAATTGTTTCTC
193 TTATTTACGTGAGAATTGTTTCTC
* *
4861 TCTTGGTTGTTGG-CAAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAA-TCTGGTT
1 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTC-GGTT
* * * **
4924 CCTTAAAGTGTTCAAGACAAT-CATTCCTTCGAGTAA-TTTTCGGAACATTCCATGGGAGGGAAA
65 CCTTAAAGTATTCAAGACAATCCAATCCTTCGAGTAATTTTTC-GAACATTTCATGCTAGGGAAA
* ** *
4987 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTCAATTAAAAACT
129 TCGCATCATTTGGTCTAAATATTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACT
*
5052 TATTTACGTGAGAATTGTGTCTC
194 TATTTACGTGAGAATTGTTTCTC
* * * * * *
5075 TCTTGCTTCTTGGACGAACTTTCAAACTTGTCGAACTTTTACGAGTTCTTTTATAACTTCGGTTC
1 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTC
* * **
5140 CCTGAAGTATTCAAGATGATCCAATCCTTCGAGTAATTTTTCGAAC-TTT-ATACGCTCA-GGAA
66 CTTAAAGTATTCAAGACAATCCAATCCTTCGAGTAATTTTTCGAACATTTCAT--GCT-AGGGAA
* * * * *
5202 GTCGCAACATTTGGTCTAAATAGTTTGTCATTTTGTAAACAGGTCTTGGCCTTTGAATTAAAAAC
128 ATCGCATCATTTGGTCTAAATATTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAAC
*
5267 TTATTTACATGAGAATTGTTTCTC
193 TTATTTACGTGAGAATTGTTTCTC
* * * * * * * ***
5291 TCTCGGTTGTCGGAGGAGCTTTCGAACTTGTAAAACTTTTATGAGTTCGTTTT-TAAATTAAATT
1 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTC-TTTTATAAATTCGGTT
** * ** * * * * *
5355 CCTTAAAGCGTTCAAAATGATCCATTCCTTCGAGTAA-TTTTCAAAACATTTCGTGCGAGAGAAA
65 CCTTAAAGTATTCAAGACAATCCAATCCTTCGAGTAATTTTTC-GAACATTTCATGCTAGGGAAA
5419 TCGCATCATTTGGTCTAAATAGTTTT-TCATTTTGTAAACA
129 TCGCATCATTTGGTCTAAATA-TTTTGTCATTTTGTAAACA
5459 CATTTTGATC
Statistics
Matches: 1228, Mismatches: 197, Indels: 72
0.82 0.13 0.05
Matches are distributed among these distances:
212 6 0.00
213 50 0.04
214 124 0.10
215 143 0.12
216 873 0.71
217 31 0.03
218 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (216 bp):
TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTC
CTTAAAGTATTCAAGACAATCCAATCCTTCGAGTAATTTTTCGAACATTTCATGCTAGGGAAATC
GCATCATTTGGTCTAAATATTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTA
TTTACGTGAGAATTGTTTCTC
Found at i:4590 original size:432 final size:431
Alignment explanation
Indices: 3782--5470 Score: 1990
Period size: 432 Copynumber: 3.9 Consensus size: 431
3772 CATGTTTTGA
* * * *
3782 TCTTGGTTCTTGGACGAACTTCCGAACGTT-TCAAACTTTTACGAGTTCATTTAAAGATTCGGTT
1 TCTTGGTTCTTGGACGAACTTCCAAAC-TTGTCAAACTTTTACGAGTTCTTTTATA-CTTCGGTT
3846 CCTTAAAGTATTCAAGACGATCCAATCCTTCAAGTAATTTTTCGAACATTACATGCTCAGGAAAT
64 CCTTAAAGTATTCAAGACGATCCAATCCTTCAAGTAATTTTTCGAACATTACATGCTCAGGAAAT
* * * * * *
3911 CGCATCATTCGGTATAAAAAGTTTGTCATTTTGAAAATAAATTTTGGTCTTTGAA-GTAAAAACT
129 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGAAAACAAGTTTTGGCCTTTGAATG-AAAAACT
3975 TATTTACGTGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
193 TATTTACGTGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * * * ** * * * *
4040 GAGTTATTTTATAAATTCGGTTCCTTAAAGTATTCAAGCCAATATAATCCTTTGAGCAATTTTCT
258 GAGTTCTTTTTTAAATCCGGTTCCTTAAAGTGTTCAAGACAATCCATTCCTTCGAGTAATTTTCA
* ** * * * *
4105 GAACATTTCATGCTTGGGAAGTTGCGTCATTTGATCTAACA-A-TTTTGTCATTTTGTAAACAAG
323 GAACATTCCATGCGAGGGAAATCGCATCATTTGGTCTAA-ATAGTTTT-TCATTTTGTAAACAAG
** * ** *
4168 TTTTGGCCTTTGAATAGAAAACTTATTTATATGAGAATTGTTTCTC
386 TTTTGATCTTTAAATAGAAAACTTATTTACGTGAGAATTGTGTCTC
* * *
4214 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTCTTATA-TCCGGTT
1 TCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTC-TT-TTATACTTCGGTT
* * * * * * * * * * *
4278 CCATAAAATGTTCATGACAATCTATTTCTTCAAGTAATTTTCCAAACATT-CAATGC-GAGGGAA
64 CCTTAAAGTATTCAAGACGATCCAATCCTTCAAGTAATTTTTCGAACATTAC-ATGCTCA-GGAA
* * *
4341 ATTGCATCATTTGCTCTAAATAGTTAT-TCATTTTGTAAAA-AAGTTTTGACCTTTGAATGAAAA
127 ATCGCATCATTTGGTCTAAATAGTT-TGTCATTTTG-AAAACAAGTTTTGGCCTTTGAATGAAAA
* * * *
4404 GCTTATTTATGTGAGAATTGTTTCTCCCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTT
190 ACTTATTTACGTGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTT
* * * *
4469 TACGAGTTCTTTTTTAAATCCGTTTCCTTAAAATGTTCATGATAATCCATTCCTTCGAGTAATTT
255 TACGAGTTCTTTTTTAAATCCGGTTCCTTAAAGTGTTCAAGACAATCCATTCCTTCGAGTAA-TT
*
4534 TTC-GAACATTCCATGCGAGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACA
319 TTCAGAACATTCCATGCGAGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACA
* * *
4598 AGTTCTGATCATTAAAT-GAAAAACTTATTTACGTGAGAATTATGTCTC
384 AGTTTTGATCTTTAAATAG-AAAACTTATTTACGTGAGAATTGTGTCTC
* * *
4646 TCTTGGTTCTTGGATGAACTTCCAAACTTGTCCAACTTTTACGAGTTCTTTTACAACTTCGGTTC
1 TCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTA-TACTTCGGTTC
* * * * * * *
4711 CTTAAAGTATTCAAGACGATCCAATCCTTGATGCAATTTTTCGAACACTACATGCTTAGTAAGTC
65 CTTAAAGTATTCAAGACGATCCAATCCTTCAAGTAATTTTTCGAACATTACATGCTCAGGAAATC
* * * *
4776 GTATCATTTGGTCTAAA-ATTTTTGTCA-TTTGAAAACTAGTTTTGGCCTTTGAATTAAAAACTT
130 GCATCATTTGGTCTAAATA-GTTTGTCATTTTGAAAACAAGTTTTGGCCTTTGAATGAAAAACTT
* * *
4839 ATTTATGCGACAATTGTTTCTCTCTTGGTTGTTGG-CAAACTTCCGAACTTGTCAAACTTTTACG
194 ATTTACGTGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
* *
4903 AGTTCTTTTTTAAATCTGGTTCCTTAAAGTGTTCAAGACAAT-CATTCCTTCGAGTAATTTTCGG
259 AGTTCTTTTTTAAATCCGGTTCCTTAAAGTGTTCAAGACAATCCATTCCTTCGAGTAATTTTCAG
* *
4967 AACATTCCATGGGAGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
324 AACATTCCATGCGAGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTT
*
5032 TGATCTTTCAATTA-AAAACTTATTTACGTGAGAATTGTGTCTC
389 TGATCTTT-AAATAGAAAACTTATTTACGTGAGAATTGTGTCTC
* * *
5075 TCTTGCTTCTTGGACGAACTTTCAAACTTGTCGAACTTTTACGAGTTCTTTTATAACTTCGGTTC
1 TCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTAT-ACTTCGGTTC
* * * * * * * *
5140 CCTGAAGTATTCAAGATGATCCAATCCTTCGAGTAATTTTTCGAACTTTATACGCTCAGGAAGTC
65 CTTAAAGTATTCAAGACGATCCAATCCTTCAAGTAATTTTTCGAACATTACATGCTCAGGAAATC
* * * * *
5205 GCAACATTTGGTCTAAATAGTTTGTCATTTTGTAAACAGGTCTTGGCCTTTGAATTAAAAACTTA
130 GCATCATTTGGTCTAAATAGTTTGTCATTTTGAAAACAAGTTTTGGCCTTTGAATGAAAAACTTA
* * * * * * * * *
5270 TTTACATGAGAATTGTTTCTCTCTCGGTTGTCGGAGGAGCTTTCGAACTTGTAAAACTTTTATGA
195 TTTACGTGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGA
* **** * * ** *
5335 GTTCGTTTTTAAATTAAATTCCTTAAAGCGTTCAAAATGATCCATTCCTTCGAGTAATTTTCAAA
260 GTTCTTTTTTAAATCCGGTTCCTTAAAGTGTTCAAGACAATCCATTCCTTCGAGTAATTTTCAGA
* * *
5400 ACATTTCGTGCGAGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACACA-TTT
325 ACATTCCATGCGAGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACA-AGTTT
5464 TGATCTT
389 TGATCTT
5471 GGTTCTTGGA
Statistics
Matches: 1071, Mismatches: 158, Indels: 56
0.83 0.12 0.04
Matches are distributed among these distances:
428 5 0.00
429 245 0.23
430 137 0.13
431 126 0.12
432 535 0.50
433 19 0.02
434 4 0.00
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (431 bp):
TCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATACTTCGGTTCC
TTAAAGTATTCAAGACGATCCAATCCTTCAAGTAATTTTTCGAACATTACATGCTCAGGAAATCG
CATCATTTGGTCTAAATAGTTTGTCATTTTGAAAACAAGTTTTGGCCTTTGAATGAAAAACTTAT
TTACGTGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAG
TTCTTTTTTAAATCCGGTTCCTTAAAGTGTTCAAGACAATCCATTCCTTCGAGTAATTTTCAGAA
CATTCCATGCGAGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTG
ATCTTTAAATAGAAAACTTATTTACGTGAGAATTGTGTCTC
Found at i:5221 original size:645 final size:648
Alignment explanation
Indices: 3782--5343 Score: 2043
Period size: 645 Copynumber: 2.4 Consensus size: 648
3772 CATGTTTTGA
*
3782 TCTTGGTTCTTGGACGAACTTCCGAACGTT-TCAAACTTTTACGAGTTCATTTA-AAGATTCGGT
1 TCTTGGTTCTTGGACGAACTTCCGAAC-TTGTCAAACTTTTACGAGTTCTTTTATAA-ATTCGGT
* *
3845 TCCTTAAAGTATTCAAGACGATCCAATCCTTCAAGTAATTTTTCGAACATTACATGCTCAGGAAA
64 TCCTTAAAGTATTCAAGATGATCCAATCCTTCGAGTAATTTTTCGAACATTACATGCTCAGGAAA
* * * * * * *
3910 TCGCATCATTCGGTATAAAAAGTTTGTCATTTTGAAAATAAATTTTGGTCTTTGAA-GTAAAAAC
129 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTCTGGTCTTTGAATG-AAAAAC
*
3974 TTATTTACGTGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTA
193 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTA
* * * *
4039 CGAGTTATTTTATAAATTCGGTTCCTTAAAGTATTCAAGCCAATATAATCCTTTGAGCAATTTTC
258 CGAGTTCTTTTACAAATTCGGTTCCTTAAAGTATTCAAGACAATACAATCCTTTGAGCAATTTTC
* * * * * *
4104 TGAACATTTCATGCTTGGGAAGTTGCGTCATTTGATCTAACAATTTTGTCATTTTGTAAACAAGT
323 TGAACACTACATGCTTAGGAAGTCGCATCATTTGATCTAACAATTTTGTCATTTTGAAAACAAGT
* * *
4169 TTTGGCCTTTGAATAGAAAACTTATTTATATGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACT
388 TTTGGCCTTTGAATAGAAAACTTATTTATACGACAATTGTTTCTCTCTTGGTTGTTGGACAAACT
* *
4234 TCCGAACTTGTCAAACTTTTACGAGTTCTTTCTTATATCCGGTTCCATAAAATGTTCATGACAAT
453 TCCGAACTTGTCAAACTTTTACGAGTTCTTTCTTAAATCCGGTTCCATAAAATGTTCAAGACAAT
* *
4299 CTATTTCTTCAAGTAATTTTCCAAACATTCAATGCGAGGGAAATTGCATCATTTGCTCTAAATAG
518 CTATTCCTTCAAGTAATTTTCCAAACATTCAATGCGAGGGAAATCGCATCATTTGCTCTAAATAG
* * * *
4364 TTATTCATTTTGTAAAAAAGTTTTGACCTTTGAATGAAAAGCTTATTTATGTGAGAATTGTTTCT
583 TTATTCATTTTGTAAAAAAGTTTTGACCTTTCAATGAAAAACTTATTTACGTGAGAATTGTGTCT
4429 C
648 C
* * * * *
4430 CCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATCCGTTTC
1 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTC
* * * * * * *
4495 CTTAAAATGTTCATGATAATCCATTCCTTCGAGTAATTTTTCGAACATTCCATGC-GAGGGAAAT
66 CTTAAAGTATTCAAGATGATCCAATCCTTCGAGTAATTTTTCGAACATTACATGCTCA-GGAAAT
* * * * *
4559 CGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTCTGATCATTAAATGAAAAACTT
130 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTCTGGTCTTTGAATGAAAAACTT
* * * * * *
4624 ATTTACGTGAGAATTATGTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCCAACTTTTACG
195 ATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
* * *
4689 AGTTCTTTTACAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAATCC-TTGATGCAATTTT-T
260 AGTTCTTTTACAAATTCGGTTCCTTAAAGTATTCAAGACAATACAATCCTTTGA-GCAATTTTCT
* * * *
4752 CGAACACTACATGCTTAGTAAGTCGTATCATTTGGTCTAA-AATTTTTGTCA-TTTGAAAACTAG
324 -GAACACTACATGCTTAGGAAGTCGCATCATTTGATCTAACAA-TTTTGTCATTTTGAAAACAAG
*
4815 TTTTGGCCTTTGAATTA-AAAACTTATTTATGCGACAATTGTTTCTCTCTTGGTTGTTGG-CAAA
387 TTTTGGCCTTTGAA-TAGAAAACTTATTTATACGACAATTGTTTCTCTCTTGGTTGTTGGACAAA
* * * *
4878 CTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATCTGGTTCCTTAAAGTGTTCAAGACA
451 CTTCCGAACTTGTCAAACTTTTACGAGTTCTTTCTTAAATCCGGTTCCATAAAATGTTCAAGACA
* ** * * *
4943 ATC-ATTCCTTCGAGTAATTTTCGGAACATTCCATGGGAGGGAAATCGCATCATTTGGTCTAAAT
516 ATCTATTCCTTCAAGTAATTTTCCAAACATTCAATGCGAGGGAAATCGCATCATTTGCTCTAAAT
* * *
5007 AGTT-TGTCATTTTGTAAACAAGTTTTGATCTTTCAATTAAAAACTTATTTACGTGAGAATTGTG
581 AGTTAT-TCATTTTGTAAAAAAGTTTTGACCTTTCAATGAAAAACTTATTTACGTGAGAATTGTG
5071 TCTC
645 TCTC
* * * * *
5075 TCTTGCTTCTTGGACGAACTTTCAAACTTGTCGAACTTTTACGAGTTCTTTTATAACTTCGGTTC
1 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTC
* * * * * *
5140 CCTGAAGTATTCAAGATGATCCAATCCTTCGAGTAATTTTTCGAACTTTATACGCTCAGGAAGTC
66 CTTAAAGTATTCAAGATGATCCAATCCTTCGAGTAATTTTTCGAACATTACATGCTCAGGAAATC
* * * *
5205 GCAACATTTGGTCTAAATAGTTTGTCATTTTGTAAAC-AGGTCTTGGCCTTTGAATTAAAAACTT
131 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTC-TGGTCTTTGAATGAAAAACTT
* * * * * * * *
5269 ATTTACATGAGAATTGTTTCTCTCTCGGTTGTCGGAGGAGCTTTCGAACTTGTAAAACTTTTATG
195 ATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
5334 AGTTCGTTTT
260 AGTTC-TTTT
5344 TAAATTAAAT
Statistics
Matches: 781, Mismatches: 121, Indels: 26
0.84 0.13 0.03
Matches are distributed among these distances:
644 5 0.01
645 324 0.41
646 70 0.09
647 73 0.09
648 306 0.39
649 3 0.00
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (648 bp):
TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTC
CTTAAAGTATTCAAGATGATCCAATCCTTCGAGTAATTTTTCGAACATTACATGCTCAGGAAATC
GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTCTGGTCTTTGAATGAAAAACTTA
TTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGA
GTTCTTTTACAAATTCGGTTCCTTAAAGTATTCAAGACAATACAATCCTTTGAGCAATTTTCTGA
ACACTACATGCTTAGGAAGTCGCATCATTTGATCTAACAATTTTGTCATTTTGAAAACAAGTTTT
GGCCTTTGAATAGAAAACTTATTTATACGACAATTGTTTCTCTCTTGGTTGTTGGACAAACTTCC
GAACTTGTCAAACTTTTACGAGTTCTTTCTTAAATCCGGTTCCATAAAATGTTCAAGACAATCTA
TTCCTTCAAGTAATTTTCCAAACATTCAATGCGAGGGAAATCGCATCATTTGCTCTAAATAGTTA
TTCATTTTGTAAAAAAGTTTTGACCTTTCAATGAAAAACTTATTTACGTGAGAATTGTGTCTC
Found at i:5946 original size:216 final size:215
Alignment explanation
Indices: 5467--6294 Score: 799
Period size: 216 Copynumber: 3.8 Consensus size: 215
5457 CACATTTTGA
* * * * * * *
5467 TCTTGGTTCTTGGATGAACTTTCGATCTTTTAAAACTTTTACGAGTTCTTTTACAACTTTGGTTT
1 TCTTGGTTCTTGGACGAACTTCCGAACTTGTAAAACTTTTACGAGTTCTTTTATAAATTTGGTTC
** * ** ** *
5532 CTTAAAGTATTCAAGACGATCCAATCCTTCAAACAATTTTTTGAACATTACATGCTCAGGAAGTC
66 CTTAAAGTATTCAAGAAAATCCAATCCTTCGAGTAATTTTCCGAACATTACATGCTCAGGAAATC
* * * *
5597 GTACCATTTGGTCTAAAAAGTTTGTCA-TTTGAAAACTAGTTTTG-TCCTTTGAATTAAAAACTT
131 GCACCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGAT-C-TTGAATTAAAAACTT
* *
5660 ATTTATGCGACAATTGTTTCTC
194 ATTTATGTGAGAATTGTTTCTC
* * * * *
5682 TCTTGGTTGTTGGACTAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATCTGGTTC
1 TCTTGGTTCTTGGACGAACTTCCGAACTTGTAAAACTTTTACGAGTTCTTTTATAAATTTGGTTC
* * * * *
5747 CTTAAAGTGTTCAAGAAAATCC-ATTCTTCCGAGTTATTTTCCGAACATTCCATGC-GAGGGAAA
66 CTTAAAGTATTCAAGAAAATCCAATCCTT-CGAGTAATTTTCCGAACATTACATGCTCA-GGAAA
* * * * *
5810 TCACATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAACTTTTGATCTCTCAATTAAAAACT
129 TCGCACCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCT-TGAATTAAAAACT
* *
5875 TATTTACGTGAGAATTGTGTCTC
193 TATTTATGTGAGAATTGTTTCTC
* ** * **
5898 TCTTGGTTCTTGGACGAACTTTCGAACTTGTCGAACTTTTACGAGTTCTTTTATAACTTCAGTTC
1 TCTTGGTTCTTGGACGAACTTCCGAACTTGTAAAACTTTTACGAGTTCTTTTATAAATTTGGTTC
** * * *
5963 CTTAAAGTATTCAAGATGATCCAATCCTTCGAGTAATTTTTCGAACATTACACGCTCAGGAAGTC
66 CTTAAAGTATTCAAGAAAATCCAATCCTTCGAGTAATTTTCCGAACATTACATGCTCAGGAAATC
* * *
6028 GCACCATTTGGTCTAAATAGTTCGTCATTTTGTAAACAAGTCTTGGCAT-TTGAATTGAAAACTT
131 GCACCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT-TTTG-ATCTTGAATTAAAAACTT
*
6092 ATTTATATGAGAATTGTTTCTC
194 ATTTATGTGAGAATTGTTTCTC
* * ** * * * * **
6114 TCTCGGTTGTCAGAGGAGCTTCCTAACTTGTAAAACTTTTACGAGTTCTTTTTTAAATTTTATTC
1 TCTTGGTTCTTGGACGAACTTCCGAACTTGTAAAACTTTTACGAGTTCTTTTATAAATTTGGTTC
* * * * * * * *
6179 CTTAAACTGTT-AA-AAACGATCCATTCCTTTGAGTAATTTTCTGAACATTCCATGC-GACGAAA
66 CTTAAAGTATTCAAGAAA--ATCCAATCCTTCGAGTAATTTTCCGAACATTACATGCTCA-GGAA
* * ** * * * *
6241 ATCTCATCAAATGGTATAAATAGTTTTTCATTTTCTAAACATGTTTTGATCTTG
128 ATCGCACCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTG
6295 GTTCTTGGAC
Statistics
Matches: 494, Mismatches: 106, Indels: 26
0.79 0.17 0.04
Matches are distributed among these distances:
214 9 0.02
215 129 0.26
216 343 0.69
217 11 0.02
218 2 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.40
Consensus pattern (215 bp):
TCTTGGTTCTTGGACGAACTTCCGAACTTGTAAAACTTTTACGAGTTCTTTTATAAATTTGGTTC
CTTAAAGTATTCAAGAAAATCCAATCCTTCGAGTAATTTTCCGAACATTACATGCTCAGGAAATC
GCACCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTGAATTAAAAACTTAT
TTATGTGAGAATTGTTTCTC
Found at i:6290 original size:432 final size:431
Alignment explanation
Indices: 5467--6292 Score: 1136
Period size: 432 Copynumber: 1.9 Consensus size: 431
5457 CACATTTTGA
* * * ** *
5467 TCTTGGTTCTTGGATGAACTTTCGATCTTTTAAAACTTTTACGAGTTCTTTTACAACTTTGGTTT
1 TCTTGGTTCTTGGACGAACTTTCGAACTTGTAAAACTTTTACGAGTTCTTTTACAACTTCAGTTC
* *
5532 CTTAAAGTATTCAAGACGATCCAATCCTTCAAACAATTTTTTGAACATTACATGCTCAGGAAGTC
66 CTTAAAGTATTCAAGACGATCCAATCCTTCAAACAATTTTTCGAACATTACACGCTCAGGAAGTC
* * * * * *
5597 GTACCATTTGGTCTAAAAAGTTTGTCATTTGAAAACTAGTTTTGTCCTTTGAATTAAAAACTTAT
131 GCACCATTTGGTCTAAAAAGTTCGTCATTTGAAAACAAGTCTTGGCATTTGAATTAAAAACTTAT
* * ** * *
5662 TTATGCGACAATTGTTTCTCTCTTGGTTGTTGGACTAACTTCCGAACTTGTCAAACTTTTACGAG
196 TTATACGACAATTGTTTCTCTCTCGGTTGTCAGACGAACTTCCGAACTTGTAAAACTTTTACGAG
* * *
5727 TTCTTTTTTAAATCTGGTTCCTTAAAGTGTTCAAGAAAATCCATTCTTCCGAGTTATTTTCCGAA
261 TTCTTTTTTAAATCTGATTCCTTAAACTGTTCAAGAAAATCCATTCTTCCGAGTAATTTTCCGAA
* * ** * *
5792 CATTCCATGCGAGGGAAATCACATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAACTTTTG
326 CATTCCATGCGACGAAAATCACATCAAATGGTATAAATAGTTTTTCATTTTCTAAACAACTTTTG
5857 ATCTCTCAATTAAAAACTTATTTACGTGAGAATTGTGTCTC
391 ATCTCTCAATTAAAAACTTATTTACGTGAGAATTGTGTCTC
** *
5898 TCTTGGTTCTTGGACGAACTTTCGAACTTGTCGAACTTTTACGAGTTCTTTTATAACTTCAGTTC
1 TCTTGGTTCTTGGACGAACTTTCGAACTTGTAAAACTTTTACGAGTTCTTTTACAACTTCAGTTC
* * **
5963 CTTAAAGTATTCAAGATGATCCAATCCTTCGAGTAATTTTTCGAACATTACACGCTCAGGAAGTC
66 CTTAAAGTATTCAAGACGATCCAATCCTTCAAACAATTTTTCGAACATTACACGCTCAGGAAGTC
* * *
6028 GCACCATTTGGTCTAAATAGTTCGTCATTTTGTAAACAAGTCTTGGCATTTGAATTGAAAACTTA
131 GCACCATTTGGTCTAAAAAGTTCGTCA-TTTGAAAACAAGTCTTGGCATTTGAATTAAAAACTTA
* * * * *
6093 TTTATATGAGAATTGTTTCTCTCTCGGTTGTCAGAGGAGCTTCCTAACTTGTAAAACTTTTACGA
195 TTTATACGACAATTGTTTCTCTCTCGGTTGTCAGACGAACTTCCGAACTTGTAAAACTTTTACGA
* * *
6158 GTTCTTTTTTAAATTTTATTCCTTAAACTGTT-AA-AAACGATCCATTCCTT-TGAGTAATTTTC
260 GTTCTTTTTTAAATCTGATTCCTTAAACTGTTCAAGAAA--ATCCATT-CTTCCGAGTAATTTTC
* * **
6220 TGAACATTCCATGCGACGAAAATCTCATCAAATGGTATAAATAGTTTTTCATTTTCTAAACATGT
322 CGAACATTCCATGCGACGAAAATCACATCAAATGGTATAAATAGTTTTTCATTTTCTAAACAACT
6285 TTTGATCT
387 TTTGATCT
6293 TGGTTCTTGG
Statistics
Matches: 340, Mismatches: 51, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
430 3 0.01
431 141 0.41
432 193 0.57
433 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.40
Consensus pattern (431 bp):
TCTTGGTTCTTGGACGAACTTTCGAACTTGTAAAACTTTTACGAGTTCTTTTACAACTTCAGTTC
CTTAAAGTATTCAAGACGATCCAATCCTTCAAACAATTTTTCGAACATTACACGCTCAGGAAGTC
GCACCATTTGGTCTAAAAAGTTCGTCATTTGAAAACAAGTCTTGGCATTTGAATTAAAAACTTAT
TTATACGACAATTGTTTCTCTCTCGGTTGTCAGACGAACTTCCGAACTTGTAAAACTTTTACGAG
TTCTTTTTTAAATCTGATTCCTTAAACTGTTCAAGAAAATCCATTCTTCCGAGTAATTTTCCGAA
CATTCCATGCGACGAAAATCACATCAAATGGTATAAATAGTTTTTCATTTTCTAAACAACTTTTG
ATCTCTCAATTAAAAACTTATTTACGTGAGAATTGTGTCTC
Found at i:6664 original size:216 final size:216
Alignment explanation
Indices: 6290--7557 Score: 1397
Period size: 216 Copynumber: 5.9 Consensus size: 216
6280 CATGTTTTGA
* *
6290 TCTTGGTTCTTGGACGAACTTCCGAACGTT-TCAAACTTTTACGAGTTCATTTA-AAGATTCGGT
1 TCTTGGTTGTTGGACGAACTTCCGAAC-TTGTCAAACTTTTACGAGTTCTTTTATAA-ATTCGGT
* * * *
6353 TCCTTAAAGTATTCAAGACGATCCAATCCTTCAAGCAATTTT-TCGAACATTACATGCTCA-GGA
64 TCCTTAAAGTATTCAAGACAATCTAATCCTTCGAGCAATTTTCTCGAACATTACATGC-GAGGGA
* * * * * * * **
6416 AATCGCATCATTCGGTATAAAAAGTTTGTCATTTTGAAAATAAATTTTGGTCTTTGAATTAAAAA
128 AATCGCATCATTTGGTCTAATAA-TTTTTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAA
* *
6481 CTTATTTACGTGACAATTGTTTCTC
192 CTTATTTATGTGAGAATTGTTTCTC
*
6506 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTATTTTATAAATTCGGTTC
1 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTC
* * * ** *
6571 CTTAAAGTATTCAAGCCAATATAATCCTTTGAGCAATTTTCT-GAACATTACATGCTTGGGAAGT
66 CTTAAAGTATTCAAGACAATCTAATCCTTCGAGCAATTTTCTCGAACATTACATGCGAGGGAAAT
* * * *
6635 TGCATCATTTGATCTAATAATTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTGAAAACTT
131 CGCATCATTTGGTCTAATAATTTT-TCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACTT
* *
6700 ATTTATATAAGAATTGTTTCTC
195 ATTTATGTGAGAATTGTTTCTC
**
6722 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGTTTTCTTTCT-TAAA-TCTGGT
1 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTT-TATAAATTC-GGT
* * * * *
6785 TCCATAAAATGTTCAAGACAATCTATTCCTTCGAGTAATTTTC-CGAACATT-CAATGCGAGGGA
64 TCCTTAAAGTATTCAAGACAATCTAATCCTTCGAGCAATTTTCTCGAACATTAC-ATGCGAGGG-
* *
6848 AAAT-GCATCATTTGCTCTAAGTAGTTTTTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAA
127 AAATCGCATCATTTGGTCTAA-TAATTTTTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAA
6912 ACTTATTTATGTGAGAATTGTTTCTC
191 ACTTATTTATGTGAGAATTGTTTCTC
* *
6938 -CTTTGGTTGTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATTCGGTT
1 TC-TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTT
* * * * * * *
7002 CCTTAAAATGTTCAAGATAATCCT-TTCCTACGAGTAATTTTC-CGAACATTCCATGCGAGGGAA
65 CCTTAAAGTATTCAAGACAAT-CTAATCCTTCGAGCAATTTTCTCGAACATTACATGCGAGGGAA
* ** * * * * * *
7065 ATCGCATCATTTAGTCTAAATCGTTTTTCATTTTGTAAACAAGTTCTGATCATTAAATGAGAAAC
129 ATCGCATCATTTGGTCT-AATAATTTTTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAAC
* * * *
7130 TTATTTACGTGTGAATTATATCTC
193 TTATTTATGTGAGAATTGTTTCTC
* * * * * ** *
7154 TTTTGGTTCTTGGATGAACTTCCAAACTTGTCGAACTTTTACGAGTTCTTTTACGACTTCGGTTC
1 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTC
* * *
7219 CTTAAAGTATTCAAGACGATCCAATCCTTC-ATGCAATTTT-TCGAACATTACATGCTCA-GGAA
66 CTTAAAGTATTCAAGACAATCTAATCCTTCGA-GCAATTTTCTCGAACATTACATGC-GAGGGAA
* * * * * * * *
7281 GTCGTATCATTCGGTCTAAAAAGTTTGTCA-TTTGAAAACTAGTTTTGGCCTTTGAATTAAAAAC
129 ATCGCATCATTTGGTCTAATAA-TTTTTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAAC
* *
7345 TTATTTATGCGACAATTGTTTCTC
193 TTATTTATGTGAGAATTGTTTCTC
*
7369 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAA-TCTGGTT
1 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTC-GGTT
* * * * * * *
7433 CCTTAAAGTGTTCAAGACAATC-ATTCTTTCGAG-TATTTTTTCGAACATTCCATGCGAGGTAAA
65 CCTTAAAGTATTCAAGACAATCTAATCCTTCGAGCAATTTTCTCGAACATTACATGCGAGGGAAA
* * *
7496 TCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGATCTTTCAATTAAAA
130 TCGCATCATTTGGTCT-AATAATTTTTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAA
Statistics
Matches: 887, Mismatches: 135, Indels: 61
0.82 0.12 0.06
Matches are distributed among these distances:
213 6 0.01
214 46 0.05
215 164 0.18
216 650 0.73
217 21 0.02
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (216 bp):
TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTC
CTTAAAGTATTCAAGACAATCTAATCCTTCGAGCAATTTTCTCGAACATTACATGCGAGGGAAAT
CGCATCATTTGGTCTAATAATTTTTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACTTA
TTTATGTGAGAATTGTTTCTC
Found at i:6666 original size:392 final size:392
Alignment explanation
Indices: 5898--6625 Score: 967
Period size: 392 Copynumber: 1.9 Consensus size: 392
5888 ATTGTGTCTC
* * * *
5898 TCTTGGTTCTTGGACGAACTTTCGAACTTGTCGAACTTTTACGAGTTCTTTTATAACTTCAGTTC
1 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCATTTATAAATTCAGTTC
* * * *
5963 CTTAAAGTATTCAAGATGATCCAATCCTTCGAGTAATTTTTCGAACATTACACGCTCAGGAAGTC
66 CTTAAAGTATTCAAGACGATCCAATCCTTCAAGCAATTTTTCGAACATTACACGCTCAGGAAATC
* * * * * *
6028 GCACCATTTGGTCTAAATAGTTCGTCATTTTGTAAACAAGTCTTGGCATTTGAATTGAAAACTTA
131 GCACCATTCGGTATAAAAAGTTCGTCATTTTGAAAACAAATCTTGGCATTTGAATTAAAAACTTA
* * * * *
6093 TTTATATGAGAATTGTTTCTCTCTCGGTTGTCAGAGGAGCTTCCTAACTTGTAAAACTTTTACGA
196 TTTACATGACAATTGTTTCTCTCTCGGTTGTCAGACGAACTTCCGAACTTGTAAAACTTTTACGA
* * ** * * * * *
6158 GTTCTTTTTTAAATTTTATTCCTTAAACTGTTAAAAACGATCCATTCCTTTGAGTAATTTTCTGA
261 GTTATTTTATAAATTCGATTCCTTAAACTATTAAAAACAATACAATCCTTTGAGCAATTTTCTGA
* * * *
6223 ACATTCCATGCGACGAAAATCTCATCAAATGGTATAAATAGTTTTTCATTTTCTAAACATGTTTT
326 ACATTACATGCGACGAAAATCTCATCAAATGATATAAATAATTTTTCATTTTCTAAACAAGTTTT
6288 GA
391 GA
*
6290 TCTTGGTTCTTGGACGAACTTCCGAACGTT-TCAAACTTTTACGAGTTCATTTA-AAGATTCGGT
1 TCTTGGTTCTTGGACGAACTTCCGAAC-TTGTCAAACTTTTACGAGTTCATTTATAA-ATTCAGT
*
6353 TCCTTAAAGTATTCAAGACGATCCAATCCTTCAAGCAATTTTTCGAACATTACATGCTCAGGAAA
64 TCCTTAAAGTATTCAAGACGATCCAATCCTTCAAGCAATTTTTCGAACATTACACGCTCAGGAAA
* * * *
6418 TCGCATCATTCGGTATAAAAAGTTTGTCATTTTGAAAATAAATTTTGGTC-TTTGAATTAAAAAC
129 TCGCACCATTCGGTATAAAAAGTTCGTCATTTTGAAAACAAATCTTGG-CATTTGAATTAAAAAC
* * ** *
6482 TTATTTACGTGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTA
193 TTATTTACATGACAATTGTTTCTCTCTCGGTTGTCAGACGAACTTCCGAACTTGTAAAACTTTTA
* * * ** *
6547 CGAGTTATTTTATAAATTCGGTTCCTTAAAGTATTCAAGCCAATATAATCCTTTGAGCAATTTTC
258 CGAGTTATTTTATAAATTCGATTCCTTAAACTATTAAAAACAATACAATCCTTTGAGCAATTTTC
6612 TGAACATTACATGC
323 TGAACATTACATGC
6626 TTGGGAAGTT
Statistics
Matches: 287, Mismatches: 46, Indels: 6
0.85 0.14 0.02
Matches are distributed among these distances:
391 2 0.01
392 282 0.98
393 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (392 bp):
TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCATTTATAAATTCAGTTC
CTTAAAGTATTCAAGACGATCCAATCCTTCAAGCAATTTTTCGAACATTACACGCTCAGGAAATC
GCACCATTCGGTATAAAAAGTTCGTCATTTTGAAAACAAATCTTGGCATTTGAATTAAAAACTTA
TTTACATGACAATTGTTTCTCTCTCGGTTGTCAGACGAACTTCCGAACTTGTAAAACTTTTACGA
GTTATTTTATAAATTCGATTCCTTAAACTATTAAAAACAATACAATCCTTTGAGCAATTTTCTGA
ACATTACATGCGACGAAAATCTCATCAAATGATATAAATAATTTTTCATTTTCTAAACAAGTTTT
GA
Found at i:7098 original size:432 final size:428
Alignment explanation
Indices: 6290--7543 Score: 1587
Period size: 432 Copynumber: 2.9 Consensus size: 428
6280 CATGTTTTGA
*
6290 TCTTGGTTCTTGGACGAACTTCCGAACGTT-TCAAACTTTTACGAGTTCATTTAAAGAT-TCGGT
1 TCTTGGTTCTTGGACGAACTTCCGAAC-TTGTCAAACTTTTACGAGTTC-TTTTAA-ATCTCGGT
6353 TCCTTAAAGTATTCAAGACGATCCAATCCTTCAAGCAATTTTTCGAACATTACATGCTCAGGAAA
63 TCCTTAAAGTATTCAAGACGATCCAATCCTTC-AGCAATTTTTCGAACATTACATGCTCAGGAAA
* * * *
6418 TCGCATCATTCGGTATAAAAAGTTTGTCATTTTGAAAATAAATTTTGGTCTTTGAATTAAAAACT
127 TCGCATCATTCGGTCTAAAAAGTTTGTCATTTTGAAAACAAGTTTTGGCCTTTGAATTAAAAACT
*
6483 TATTTACGTGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
192 TATTTATGTGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * * * * * * *
6548 GAGTTATTTTATAAATTCGGTTCCTTAAAGTATTCAAGCCAATATAATCCTTTGAGCAATTTTCT
257 GAGTTCTTTTTTAAATTCGGTTCCTTAAAGTGTTCAAGACAATCT-TTCCTTCGAGTAATTTTCC
* ** * * *
6613 GAACATTACATGCTTGGGAAGTTGCATCATTTGATCT-AATAATTTTGTCATTTTGTAAACAAGT
321 GAACATTCCATGCGAGGGAAATCGCATCATTTG-TCTAAATAGTTTT-TCATTTTGTAAACAAGT
* * * * * *
6677 TTTGGCCTTTGAATTGA-AAACTTATTTATATAAGAATTGTTTCTC
384 TTTGACCATT-AAATGAGAAACTTATTTACATAAGAATTATATCTC
* **
6722 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGTTTTCTTTCTTAAATCT-GGTT
1 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTC-TT-TTAAATCTCGGTT
* * * * * * * * *
6786 CCATAAAATGTTCAAGACAATCTATTCCTTCGAGTAATTTTCCGAACATT-CAATGC-GAGGGAA
64 CCTTAAAGTATTCAAGACGATCCAATCCTTC-AGCAATTTTTCGAACATTAC-ATGCTCA-GG-A
* * ** * * *
6849 AAT-GCATCATTTGCTCTAAGTAGTTTTTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAA
125 AATCGCATCATTCGGTCTAAAAAGTTTGTCATTTTGAAAACAAGTTTTGGCCTTTGAATTAAAAA
* *
6913 CTTATTTATGTGAGAATTGTTTCTC-CTTTGGTTGTTGGACGAACTTCCAAACTTGTCAAACTTT
190 CTTATTTATGTGACAATTGTTTCTCTC-TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTT
* * *
6977 TACGAGTTCTTTTTTAAATTCGGTTCCTTAAAATGTTCAAGATAATCCTTTCCTACGAGTAATTT
254 TACGAGTTCTTTTTTAAATTCGGTTCCTTAAAGTGTTCAAGACAAT-CTTTCCTTCGAGTAATTT
*
7042 TCCGAACATTCCATGCGAGGGAAATCGCATCATTTAGTCTAAATCGTTTTTCATTTTGTAAACAA
318 TCCGAACATTCCATGCGAGGGAAATCGCATCATTT-GTCTAAATAGTTTTTCATTTTGTAAACAA
* * * **
7107 GTTCTGATCATTAAATGAGAAACTTATTTACGTGTGAATTATATCTC
382 GTTTTGACCATTAAATGAGAAACTTATTTACATAAGAATTATATCTC
* * * * *
7154 TTTTGGTTCTTGGATGAACTTCCAAACTTGTCGAACTTTTACGAGTTCTTTTACGA-CTTCGGTT
1 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTA-AATC-TCGGTT
*
7218 CCTTAAAGTATTCAAGACGATCCAATCCTTCATGCAATTTTTCGAACATTACATGCTCAGGAAGT
64 CCTTAAAGTATTCAAGACGATCCAATCCTTCA-GCAATTTTTCGAACATTACATGCTCAGGAAAT
* *
7283 CGTATCATTCGGTCTAAAAAGTTTGTCA-TTTGAAAACTAGTTTTGGCCTTTGAATTAAAAACTT
128 CGCATCATTCGGTCTAAAAAGTTTGTCATTTTGAAAACAAGTTTTGGCCTTTGAATTAAAAACTT
*
7347 ATTTATGCGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
193 ATTTATGTGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
* * * *
7412 AGTTCTTTTTTAAA-TCTGGTTCCTTAAAGTGTTCAAGACAATCATTCTTTCGAGTATTTTTTCG
258 AGTTCTTTTTTAAATTC-GGTTCCTTAAAGTGTTCAAGACAATCTTTCCTTCGAGTAATTTTCCG
*
7476 AACATTCCATGCGAGGTAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTT
322 AACATTCCATGCGAGGGAAATCGCATCATTT-GTCTAAATAGTTTTTCATTTTGTAAACAAGTTT
7541 TGA
386 TGA
7544 TCTTTCAATT
Statistics
Matches: 702, Mismatches: 100, Indels: 42
0.83 0.12 0.05
Matches are distributed among these distances:
430 87 0.12
431 148 0.21
432 448 0.64
433 19 0.03
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (428 bp):
TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAAATCTCGGTTCC
TTAAAGTATTCAAGACGATCCAATCCTTCAGCAATTTTTCGAACATTACATGCTCAGGAAATCGC
ATCATTCGGTCTAAAAAGTTTGTCATTTTGAAAACAAGTTTTGGCCTTTGAATTAAAAACTTATT
TATGTGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGT
TCTTTTTTAAATTCGGTTCCTTAAAGTGTTCAAGACAATCTTTCCTTCGAGTAATTTTCCGAACA
TTCCATGCGAGGGAAATCGCATCATTTGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGACC
ATTAAATGAGAAACTTATTTACATAAGAATTATATCTC
Done.