Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001105.1 Kokia drynarioides strain JFW-HI SEQ_112384, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 29389
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33

Warning! 3 characters in sequence are not A, C, G, or T


Found at i:9314 original size:103 final size:103

Alignment explanation


    Indices: 9130--9333  Score: 266
    Period size: 103  Copynumber: 2.0  Consensus size: 103

       9120 AACCCCTTTC

                   *                                *     *  *               
       9130 GATCTAATAGTTACAATTAATCCTAATGGACAGTCAAGATTTAATTTTAGAACATTTCCACCTAA
          1 GATCTAACAGTTACAATTAATCCTAATGGACAGTCAAGATCTAATTCTAAAACATTTCCACCTAA

                       *                           
       9195 CTCATTAAATATTATTC-ATTGGTGAAGTATTCTAGATA
         66 CTCATTAAATACTATTCAATT-GTGAAGTATTCTAGATA

                    *             *        *                     *    * *    
       9233 GATCTAACGGTTACAATTAATCTTAATGGACGGTCAAGATCTAATTCTAAAACTTTTCTATCTAA
          1 GATCTAACAGTTACAATTAATCCTAATGGACAGTCAAGATCTAATTCTAAAACATTTCCACCTAA

                      *             **          
       9298 CTCATTAAATGCTATTCAATTGTGGGGTATTCTAGA
         66 CTCATTAAATACTATTCAATTGTGAAGTATTCTAGA

       9334 ACTTCCGAAA


Statistics
Matches: 86,  Mismatches: 14, Indels: 2
        0.84            0.14        0.02

Matches are distributed among these distances:
 103   83  0.97
 104    3  0.03

ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37


Consensus pattern (103 bp):   
GATCTAACAGTTACAATTAATCCTAATGGACAGTCAAGATCTAATTCTAAAACATTTCCACCTAA
CTCATTAAATACTATTCAATTGTGAAGTATTCTAGATA

Found at i:26021 original size:25 final size:27

Alignment explanation


    Indices: 25979--26032  Score: 67
    Period size: 26  Copynumber: 2.1  Consensus size: 27

      25969 TAACATTTAA

                *               *      
      25979 TTATTTTTTTAAAATTTAAAGAAT-TT
          1 TTATATTTTTAAAATTTAAAAAATATT

                         *             
      26005 TTATATTTTT-AATTTTAAAAAATATT
          1 TTATATTTTTAAAATTTAAAAAATATT

              
      26031 TT
          1 TT

      26033 TTAATAACTT


Statistics
Matches: 24,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  25   11  0.46
  26   13  0.54

ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59


Consensus pattern (27 bp):   
TTATATTTTTAAAATTTAAAAAATATT

Done.