Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011053.1 Kokia drynarioides strain JFW-HI SEQ_126024, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2653
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.40


Found at i:1638 original size:36 final size:36

Alignment explanation


    Indices: 1598--1682  Score: 116
    Period size: 36  Copynumber: 2.4  Consensus size: 36

       1588 TTACTAGGAG

                        **            *    *    
       1598 ACTTGAAGAGCTTGCAAGAGCTGAATTTATTTGGAA
          1 ACTTGAAGAGCTCACAAGAGCTGAATATATTGGGAA

                          *     *               
       1634 ACTTGAAGAGCTCATAAGAGTTGAATATATTGGGAA
          1 ACTTGAAGAGCTCACAAGAGCTGAATATATTGGGAA

                         
       1670 ACTTGAAGAGCTC
          1 ACTTGAAGAGCTC

       1683 GTATAAGCCG


Statistics
Matches: 43,  Mismatches: 6, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  36   43  1.00

ACGTcount: A:0.35, C:0.12, G:0.25, T:0.28


Consensus pattern (36 bp):   
ACTTGAAGAGCTCACAAGAGCTGAATATATTGGGAA
Done.