Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011054.1 Kokia drynarioides strain JFW-HI SEQ_126025, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 157414
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.34
Warning! 53 characters in sequence are not A, C, G, or T
Found at i:1205 original size:23 final size:23
Alignment explanation
Indices: 1179--1305 Score: 118
Period size: 23 Copynumber: 5.4 Consensus size: 23
1169 ACGCAAGCGC
* *
1179 GCTTATTGTTTCGCACTTTGTGT
1 GCTTACTGTTTCGCACTGTGTGT
1202 GCTTACTGTTTCGCAACT-TGTGT
1 GCTTACTGTTTCGC-ACTGTGTGT
* *
1225 GCCTACTGATT-GCACTGTGTGT
1 GCTTACTGTTTCGCACTGTGTGT
* *
1247 GCCTACTGGATT-GCACTGTGTGT
1 GCTTACT-GTTTCGCACTGTGTGT
1270 GCTTACTGTTTCCCCAGCACT-TGTGT
1 GCTTACTGTTT---C-GCACTGTGTGT
1296 GCTTACTGTT
1 GCTTACTGTT
1306 AAATACTTCG
Statistics
Matches: 91, Mismatches: 5, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
21 3 0.03
22 17 0.19
23 48 0.53
24 3 0.03
26 15 0.16
27 5 0.05
ACGTcount: A:0.12, C:0.23, G:0.24, T:0.42
Consensus pattern (23 bp):
GCTTACTGTTTCGCACTGTGTGT
Found at i:3641 original size:2 final size:2
Alignment explanation
Indices: 3636--3663 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
3626 AATACATAAA
3636 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3664 TTATTTATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4094 original size:16 final size:17
Alignment explanation
Indices: 4062--4096 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
4052 TATTTATATC
4062 TTCATTTCAGGAAAAAAA
1 TTCATTTCA-GAAAAAAA
4080 TTCATTTCA-AAAAAAA
1 TTCATTTCAGAAAAAAA
4096 T
1 T
4097 AATATTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
18 9 0.53
ACGTcount: A:0.51, C:0.11, G:0.06, T:0.31
Consensus pattern (17 bp):
TTCATTTCAGAAAAAAA
Found at i:4754 original size:31 final size:34
Alignment explanation
Indices: 4692--4757 Score: 93
Period size: 31 Copynumber: 2.0 Consensus size: 34
4682 TAATAAATTT
4692 AGGTACCAAATTGAATATAAAAAATACCAAGTTC
1 AGGTACCAAATTGAATATAAAAAATACCAAGTTC
**
4726 AGGTACCAAATT-AA-A-AAAAAATGTCAAGTTC
1 AGGTACCAAATTGAATATAAAAAATACCAAGTTC
4757 A
1 A
4758 AATATCAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
31 15 0.50
32 1 0.03
33 2 0.07
34 12 0.40
ACGTcount: A:0.52, C:0.14, G:0.12, T:0.23
Consensus pattern (34 bp):
AGGTACCAAATTGAATATAAAAAATACCAAGTTC
Found at i:6956 original size:22 final size:22
Alignment explanation
Indices: 6909--6958 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
6899 TACAATATTC
* * *
6909 AAATAATATTAAAAAGACAACG
1 AAATAATAGTAAAAACACAACA
6931 AAATAATAGTAAAAACACATA-A
1 AAATAATAGTAAAAACACA-ACA
6953 AAATAA
1 AAATAA
6959 CATCTAAACA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 23 0.96
23 1 0.04
ACGTcount: A:0.68, C:0.08, G:0.06, T:0.18
Consensus pattern (22 bp):
AAATAATAGTAAAAACACAACA
Found at i:7006 original size:12 final size:12
Alignment explanation
Indices: 6967--7022 Score: 58
Period size: 12 Copynumber: 4.7 Consensus size: 12
6957 AACATCTAAA
*
6967 CAACCAAAATAG
1 CAACAAAAATAG
* * *
6979 CAGCAAAACTAA
1 CAACAAAAATAG
6991 CAACAAAAATAG
1 CAACAAAAATAG
*
7003 CAACAAAAACAG
1 CAACAAAAATAG
*
7015 TAACAAAA
1 CAACAAAA
7023 CAGTAAAAAA
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
12 35 1.00
ACGTcount: A:0.64, C:0.21, G:0.07, T:0.07
Consensus pattern (12 bp):
CAACAAAAATAG
Found at i:7020 original size:27 final size:24
Alignment explanation
Indices: 6965--7010 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
6955 ATAACATCTA
* *
6965 AACAACCAAAATAGCAGCAAAACT
1 AACAACAAAAATAGCAACAAAACT
6989 AACAACAAAAATAGCAACAAAA
1 AACAACAAAAATAGCAACAAAA
7011 ACAGTAACAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.65, C:0.22, G:0.07, T:0.07
Consensus pattern (24 bp):
AACAACAAAAATAGCAACAAAACT
Found at i:8736 original size:21 final size:19
Alignment explanation
Indices: 8711--8756 Score: 65
Period size: 21 Copynumber: 2.3 Consensus size: 19
8701 ACACGCAAAT
8711 AAATAATTTAAAAATTATAAA
1 AAATAATTTAAAAA-TA-AAA
*
8732 AAATATTTTAAAAATAAAA
1 AAATAATTTAAAAATAAAA
8751 AAATAA
1 AAATAA
8757 AAATTCATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 8 0.35
20 2 0.09
21 13 0.57
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (19 bp):
AAATAATTTAAAAATAAAA
Found at i:8744 original size:20 final size:19
Alignment explanation
Indices: 8711--8755 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
8701 ACACGCAAAT
*
8711 AAATAATTTAAAAATTATAAA
1 AAAT-ATTTAAAAAATA-AAA
*
8732 AAATATTTTAAAAATAAAA
1 AAATATTTAAAAAATAAAA
8751 AAATA
1 AAATA
8756 AAAATTCATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 8 0.36
20 10 0.45
21 4 0.18
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (19 bp):
AAATATTTAAAAAATAAAA
Found at i:8760 original size:35 final size:34
Alignment explanation
Indices: 8719--8785 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 34
8709 ATAAATAATT
*
8719 TAAAAATT-ATAAAAAATATTTTAAAAATAAAAAAA
1 TAAAAATTCAT-AAAAATA-TTAAAAAATAAAAAAA
8754 TAAAAATTCATAAAAATATTAAAAAATAAAAA
1 TAAAAATTCATAAAAATATTAAAAAATAAAAA
8786 TCATGAAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
34 13 0.43
35 15 0.50
36 2 0.07
ACGTcount: A:0.72, C:0.01, G:0.00, T:0.27
Consensus pattern (34 bp):
TAAAAATTCATAAAAATATTAAAAAATAAAAAAA
Found at i:10038 original size:2 final size:2
Alignment explanation
Indices: 10033--10058 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
10023 GAGACACGAA
10033 AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG
10059 TGTGTGTGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:15266 original size:27 final size:27
Alignment explanation
Indices: 15227--15278 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
15217 TCCTTTAAGC
** *
15227 CTATTCCTTTTTTTTCATTCTTTAATT
1 CTATTCCGCTTTTATCATTCTTTAATT
15254 CTATTCCGCTTTTATCATTCTTTAA
1 CTATTCCGCTTTTATCATTCTTTAA
15279 GTCTGATGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.17, C:0.21, G:0.02, T:0.60
Consensus pattern (27 bp):
CTATTCCGCTTTTATCATTCTTTAATT
Found at i:17286 original size:33 final size:33
Alignment explanation
Indices: 17244--17310 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
17234 TTCATACAAG
17244 TTCGTGCATTTATTTCCTTAAAAACATTCTCAT
1 TTCGTGCATTTATTTCCTTAAAAACATTCTCAT
*
17277 TTCGTGCATTTATTTCCTTAAAAACGTTCTCAT
1 TTCGTGCATTTATTTCCTTAAAAACATTCTCAT
17310 T
1 T
17311 GTTCTTCACC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.25, C:0.21, G:0.07, T:0.46
Consensus pattern (33 bp):
TTCGTGCATTTATTTCCTTAAAAACATTCTCAT
Found at i:27455 original size:7 final size:8
Alignment explanation
Indices: 27438--27462 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
27428 ATACCTTGAG
27438 AAATAAAA
1 AAATAAAA
27446 AAATAAAA
1 AAATAAAA
27454 AAATAAAA
1 AAATAAAA
27462 A
1 A
27463 GATGAATGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAATAAAA
Found at i:27743 original size:21 final size:22
Alignment explanation
Indices: 27701--27757 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
27691 AATAAAAATC
*
27701 CAAAAAATCATAAAACTTTTTT
1 CAAAAAATCATAAAACTATTTT
*
27723 CAAAAAATCAT-AATCTATTTT
1 CAAAAAATCATAAAACTATTTT
* *
27744 -TAAAAATTATAAAA
1 CAAAAAATCATAAAA
27758 AAAAACAATA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
20 8 0.28
21 10 0.34
22 11 0.38
ACGTcount: A:0.54, C:0.11, G:0.00, T:0.35
Consensus pattern (22 bp):
CAAAAAATCATAAAACTATTTT
Found at i:28663 original size:17 final size:19
Alignment explanation
Indices: 28633--28669 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
28623 GTGATTCTAC
*
28633 TAAAAAATGGAAA-TTGAT
1 TAAAAAATGAAAATTTGAT
28651 TAAAAAA-GAAAATTTGAT
1 TAAAAAATGAAAATTTGAT
28669 T
1 T
28670 TTTTGTAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.57, C:0.00, G:0.14, T:0.30
Consensus pattern (19 bp):
TAAAAAATGAAAATTTGAT
Found at i:33262 original size:24 final size:24
Alignment explanation
Indices: 33207--33251 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
33197 ACAATTTTTG
*
33207 TAATATTTTATAAAAATATAAAAA
1 TAATTTTTTATAAAAATATAAAAA
*
33231 TCATTTTTTATAAAAAT-TAAA
1 TAATTTTTTATAAAAATATAAA
33252 TGAAAATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (24 bp):
TAATTTTTTATAAAAATATAAAAA
Found at i:38556 original size:6 final size:6
Alignment explanation
Indices: 38545--38578 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
38535 GAGTATGAGA
*
38545 AGGGAG AGGGAG AGGGAG AGGGAG ATGGAG AGGG
1 AGGGAG AGGGAG AGGGAG AGGGAG AGGGAG AGGG
38579 GTTTTAGTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.32, C:0.00, G:0.65, T:0.03
Consensus pattern (6 bp):
AGGGAG
Found at i:39655 original size:33 final size:33
Alignment explanation
Indices: 39592--39655 Score: 76
Period size: 33 Copynumber: 1.9 Consensus size: 33
39582 TATTTATATT
* * * *
39592 TTTTAATAATTTAATATTTAATCAATATTTTTA
1 TTTTAAAAATTTAATATTAAATAAAAATTTTTA
39625 TTTTAAAAATTTAA-ATATAAATAAAAATTTT
1 TTTTAAAAATTTAATAT-TAAATAAAAATTTT
39656 AAAATTTAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
32 2 0.08
33 24 0.92
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (33 bp):
TTTTAAAAATTTAATATTAAATAAAAATTTTTA
Found at i:45763 original size:31 final size:30
Alignment explanation
Indices: 45728--45786 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 30
45718 TTTGATTAAA
*
45728 TGTGAAATGTCATATAT-AAATTTTAATTTTG
1 TGTG-AAT-TCATACATAAAATTTTAATTTTG
*
45759 TGTGAATTTATACATAAAATTTTAATTT
1 TGTGAATTCATACATAAAATTTTAATTT
45787 AATTTGATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 6 0.24
30 15 0.60
31 4 0.16
ACGTcount: A:0.37, C:0.03, G:0.10, T:0.49
Consensus pattern (30 bp):
TGTGAATTCATACATAAAATTTTAATTTTG
Found at i:47101 original size:14 final size:16
Alignment explanation
Indices: 47082--47114 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
47072 TTTTTACACA
47082 TTTATAT-TC-AATTT
1 TTTATATATCTAATTT
47096 TTTATATATCTAATTT
1 TTTATATATCTAATTT
47112 TTT
1 TTT
47115 TTTTGAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
15 2 0.12
16 8 0.47
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.67
Consensus pattern (16 bp):
TTTATATATCTAATTT
Found at i:48791 original size:36 final size:36
Alignment explanation
Indices: 48744--48813 Score: 113
Period size: 36 Copynumber: 1.9 Consensus size: 36
48734 TCCTCCAATG
48744 TAAGATTCCGTAATTCGAGAATAGATTTTGGACTGT
1 TAAGATTCCGTAATTCGAGAATAGATTTTGGACTGT
* * *
48780 TAAGATTCCGTAGTTTGCGAATAGATTTTGGACT
1 TAAGATTCCGTAATTCGAGAATAGATTTTGGACT
48814 CCCTCATTCC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.37
Consensus pattern (36 bp):
TAAGATTCCGTAATTCGAGAATAGATTTTGGACTGT
Found at i:54093 original size:20 final size:20
Alignment explanation
Indices: 54059--54099 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
54049 ATATATATAT
*
54059 ATATTAAAAGTTTATCTAAA
1 ATATTAAAAGTTTATATAAA
54079 ATATTAAAA-TCTTATATAAA
1 ATATTAAAAGT-TTATATAAA
54099 A
1 A
54100 GTGTATAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 1 0.05
20 18 0.95
ACGTcount: A:0.54, C:0.05, G:0.02, T:0.39
Consensus pattern (20 bp):
ATATTAAAAGTTTATATAAA
Found at i:56144 original size:13 final size:13
Alignment explanation
Indices: 56126--56152 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
56116 ACACCATTAT
56126 ATTAAAAAAAAAA
1 ATTAAAAAAAAAA
56139 ATTAAAAAAAAAA
1 ATTAAAAAAAAAA
56152 A
1 A
56153 ATCCATTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (13 bp):
ATTAAAAAAAAAA
Found at i:56845 original size:2 final size:2
Alignment explanation
Indices: 56840--56874 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
56830 AATTACCCAA
56840 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT G
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT G
56875 ATGAGAAAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.00, G:0.51, T:0.49
Consensus pattern (2 bp):
GT
Found at i:57091 original size:5 final size:5
Alignment explanation
Indices: 57081--57106 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
57071 GGTTGGTGAG
57081 CTCCC CTCCC CTCCC CTCCC CTCCC C
1 CTCCC CTCCC CTCCC CTCCC CTCCC C
57107 ATTTTCTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.81, G:0.00, T:0.19
Consensus pattern (5 bp):
CTCCC
Found at i:64785 original size:21 final size:21
Alignment explanation
Indices: 64759--64815 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 21
64749 GCCCTACTTA
64759 AAGAAGAAGAAGATGATGATG
1 AAGAAGAAGAAGATGATGATG
* *
64780 AAGAAGAAGAAGAAGGTGATG
1 AAGAAGAAGAAGATGATGATG
* *
64801 GAGAAGCAGAA-ATGA
1 AAGAAGAAGAAGATGA
64816 CAGAAGGGAA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 2 0.07
21 28 0.93
ACGTcount: A:0.53, C:0.02, G:0.35, T:0.11
Consensus pattern (21 bp):
AAGAAGAAGAAGATGATGATG
Found at i:71674 original size:23 final size:23
Alignment explanation
Indices: 71619--71674 Score: 62
Period size: 23 Copynumber: 2.4 Consensus size: 23
71609 TTTCAAGCAA
71619 TAAATATAAATTATTTGTAAAAT
1 TAAATATAAATTATTTGTAAAAT
* *
71642 TTAATTTAAA-TATTT-TAAATAT
1 TAAATATAAATTATTTGTAAA-AT
71664 TAAAATATAAA
1 T-AAATATAAA
71675 CATGAAATCC
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
21 4 0.15
22 8 0.30
23 15 0.56
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.45
Consensus pattern (23 bp):
TAAATATAAATTATTTGTAAAAT
Found at i:77655 original size:21 final size:21
Alignment explanation
Indices: 77630--77669 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
77620 CAATTATTTA
77630 AATCC-TAAATCCCAAACTCAT
1 AATCCGTAAAT-CCAAACTCAT
*
77651 AATCCGTAACTCCAAACTC
1 AATCCGTAAATCCAAACTC
77670 TTAAACCCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.40, C:0.35, G:0.03, T:0.23
Consensus pattern (21 bp):
AATCCGTAAATCCAAACTCAT
Found at i:79631 original size:2 final size:2
Alignment explanation
Indices: 79624--79648 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
79614 ATGAAAGAAG
79624 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
79649 TCATCTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:81607 original size:21 final size:22
Alignment explanation
Indices: 81583--81637 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 22
81573 GGCACATACG
81583 TATAAAAATA-TATATGTAAAA
1 TATAAAAATATTATATGTAAAA
* * *
81604 TATAAAAGAAATTTTATGTAATA
1 TATAAAA-ATATTATATGTAAAA
81627 TATAATAAATA
1 TATAA-AAATA
81638 GTTACTTAAG
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
21 7 0.26
22 2 0.07
23 16 0.59
24 2 0.07
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.36
Consensus pattern (22 bp):
TATAAAAATATTATATGTAAAA
Found at i:83933 original size:2 final size:2
Alignment explanation
Indices: 83926--83958 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
83916 GCCAAAATTA
83926 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
83959 ATCAAGAGTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:91942 original size:16 final size:16
Alignment explanation
Indices: 91921--91975 Score: 58
Period size: 17 Copynumber: 3.4 Consensus size: 16
91911 TTTTAAAATT
91921 ATTTTTTAAAATATAA
1 ATTTTTTAAAATATAA
*
91937 ATTTTTTTAAATTATAA
1 A-TTTTTTAAAATATAA
* * *
91954 AATTATTAAAAT-TAT
1 ATTTTTTAAAATATAA
91969 ATTTTTT
1 ATTTTTT
91976 TGAAATAATA
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
15 7 0.23
16 9 0.29
17 15 0.48
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
ATTTTTTAAAATATAA
Found at i:91944 original size:17 final size:17
Alignment explanation
Indices: 91922--91987 Score: 64
Period size: 16 Copynumber: 3.9 Consensus size: 17
91912 TTTAAAATTA
91922 TTTTTTAAAATATAAAT
1 TTTTTTAAAATATAAAT
*
91939 TTTTTTAAATTATAAA-
1 TTTTTTAAAATATAAAT
* * *
91955 ATTATTAAAAT-TATAT
1 TTTTTTAAAATATAAAT
*
91971 TTTTTTGAAATAATAAA
1 TTTTTTAAAAT-ATAAA
91988 ATTATTAAAT
Statistics
Matches: 37, Mismatches: 9, Indels: 5
0.73 0.18 0.10
Matches are distributed among these distances:
15 3 0.08
16 16 0.43
17 15 0.41
18 3 0.08
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (17 bp):
TTTTTTAAAATATAAAT
Found at i:91981 original size:16 final size:16
Alignment explanation
Indices: 91911--91981 Score: 51
Period size: 16 Copynumber: 4.6 Consensus size: 16
91901 CAGCAAATGA
91911 TTTTAAAA-T-TA-TT
1 TTTTAAAATTATATTT
*
91924 TTTTAAAATATAAATTT
1 TTTTAAAAT-TATATTT
**
91941 TTTT-AAATTATAAAAT
1 TTTTAAAATTAT-ATTT
*
91957 TATTAAAATTATATTT
1 TTTTAAAATTATATTT
*
91973 TTTTGAAAT
1 TTTTAAAAT
91982 AATAAAATTA
Statistics
Matches: 43, Mismatches: 9, Indels: 9
0.70 0.15 0.15
Matches are distributed among these distances:
13 8 0.19
15 3 0.07
16 19 0.44
17 13 0.30
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (16 bp):
TTTTAAAATTATATTT
Found at i:92912 original size:32 final size:32
Alignment explanation
Indices: 92845--92913 Score: 84
Period size: 32 Copynumber: 2.2 Consensus size: 32
92835 AAAATCTCCC
*
92845 AAAACCCAAAAATCCCCAAAATTTTGAAACTT
1 AAAACCCAAAAATCCCCAAAATTTTGAAACCT
* * * * *
92877 AAAATCCAAAAATCCTCGAATTTTTTAAACCT
1 AAAACCCAAAAATCCCCAAAATTTTGAAACCT
92909 AAAAC
1 AAAAC
92914 AAAATCCTCA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.49, C:0.23, G:0.03, T:0.25
Consensus pattern (32 bp):
AAAACCCAAAAATCCCCAAAATTTTGAAACCT
Found at i:100987 original size:14 final size:14
Alignment explanation
Indices: 100951--100991 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
100941 TGATTAGTCC
100951 CAAATTATAATAAA
1 CAAATTATAATAAA
*
100965 CATGA-TATAATAAA
1 CA-AATTATAATAAA
100979 CAAATTAT-ATAAA
1 CAAATTATAATAAA
100992 AATATACCTG
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
13 6 0.26
14 16 0.70
15 1 0.04
ACGTcount: A:0.61, C:0.07, G:0.02, T:0.29
Consensus pattern (14 bp):
CAAATTATAATAAA
Found at i:102943 original size:18 final size:18
Alignment explanation
Indices: 102923--102958 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
102913 AATTTTTAAT
*
102923 TTTTTTATTTTT-TTGGG
1 TTTTTTCTTTTTGTTGGG
102940 TTTTTTCTTTTTGTTGGG
1 TTTTTTCTTTTTGTTGGG
102958 T
1 T
102959 CGGATAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.03, C:0.03, G:0.19, T:0.75
Consensus pattern (18 bp):
TTTTTTCTTTTTGTTGGG
Found at i:106012 original size:30 final size:30
Alignment explanation
Indices: 105976--106070 Score: 154
Period size: 30 Copynumber: 3.2 Consensus size: 30
105966 CAATTTAACA
*
105976 AACAAATGTCTCTAAAATAATAACAAAATT
1 AACAAATGCCTCTAAAATAATAACAAAATT
*
106006 AACAAATGCCTCTAAAATAATAATAAAATT
1 AACAAATGCCTCTAAAATAATAACAAAATT
* *
106036 AACAAACGCCTCAAAAATAATAACAAAATT
1 AACAAATGCCTCTAAAATAATAACAAAATT
106066 AACAA
1 AACAA
106071 TAAAATAAAT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 60 1.00
ACGTcount: A:0.59, C:0.16, G:0.03, T:0.22
Consensus pattern (30 bp):
AACAAATGCCTCTAAAATAATAACAAAATT
Found at i:108207 original size:21 final size:22
Alignment explanation
Indices: 108175--108225 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 22
108165 TAAAAATTAA
108175 AAAAAAATCAAAA-TAAT-TTT
1 AAAAAAATCAAAATTAATATTT
* *
108195 AAAAAATTCCAAAATTTATATTT
1 AAAAAAAT-CAAAATTAATATTT
108218 AAAAAAAT
1 AAAAAAAT
108226 TATAATAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 7 0.28
21 5 0.20
22 3 0.12
23 10 0.40
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (22 bp):
AAAAAAATCAAAATTAATATTT
Found at i:108236 original size:21 final size:20
Alignment explanation
Indices: 108212--108263 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
108202 TCCAAAATTT
*
108212 ATATTTAAAAAAATTATAATA
1 ATATTTAAAAAAATT-TAAAA
* *
108233 ATATATAAAGAAATTTAAAA
1 ATATTTAAAAAAATTTAAAA
108253 ATATTTTAAAA
1 ATA-TTTAAAA
108264 TAATAATTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
20 7 0.28
21 18 0.72
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (20 bp):
ATATTTAAAAAAATTTAAAA
Found at i:112143 original size:18 final size:18
Alignment explanation
Indices: 112109--112162 Score: 56
Period size: 18 Copynumber: 2.9 Consensus size: 18
112099 TTTTGAATTT
*
112109 TTTTATTTTTTCCAAAAC
1 TTTTATTTTCTCCAAAAC
*
112127 TTTTA-TTTCTCCTAAAAAA
1 TTTTATTTTCTCC--AAAAC
*
112146 TCTTATTTTCTCCAAAA
1 TTTTATTTTCTCCAAAA
112163 TCCTCAAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
17 6 0.20
18 9 0.30
19 8 0.27
20 7 0.23
ACGTcount: A:0.31, C:0.19, G:0.00, T:0.50
Consensus pattern (18 bp):
TTTTATTTTCTCCAAAAC
Found at i:112145 original size:20 final size:19
Alignment explanation
Indices: 112111--112162 Score: 54
Period size: 19 Copynumber: 2.8 Consensus size: 19
112101 TTGAATTTTT
* * *
112111 TTATTTTTTCC-AAAACTT
1 TTATTTTCTCCAAAAAATC
112129 TTA-TTTCTCCTAAAAAATC
1 TTATTTTCTCC-AAAAAATC
112148 TTATTTTCTCCAAAA
1 TTATTTTCTCCAAAA
112163 TCCTCAAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
17 6 0.21
18 3 0.11
19 12 0.43
20 7 0.25
ACGTcount: A:0.33, C:0.19, G:0.00, T:0.48
Consensus pattern (19 bp):
TTATTTTCTCCAAAAAATC
Found at i:112254 original size:18 final size:19
Alignment explanation
Indices: 112231--112266 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
112221 CCAAATCTTT
*
112231 TTTTTATTTCCT-TCAAAA
1 TTTTTACTTCCTCTCAAAA
112249 TTTTTACTTCCTCTCAAA
1 TTTTTACTTCCTCTCAAA
112267 TCTCAAAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.25, C:0.22, G:0.00, T:0.53
Consensus pattern (19 bp):
TTTTTACTTCCTCTCAAAA
Found at i:112971 original size:22 final size:22
Alignment explanation
Indices: 112922--112971 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
112912 ATTAAAAAAA
112922 TTAAAAAATTATATAATTTTCT
1 TTAAAAAATTATATAATTTTCT
*
112944 TCAAAAAATTATATAATTATT-T
1 TTAAAAAATTATATAATT-TTCT
112966 TTAAAA
1 TTAAAA
112972 TTTTAAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 23 0.92
23 2 0.08
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (22 bp):
TTAAAAAATTATATAATTTTCT
Found at i:112994 original size:19 final size:19
Alignment explanation
Indices: 112970--113038 Score: 61
Period size: 18 Copynumber: 3.5 Consensus size: 19
112960 TTATTTTTAA
112970 AATTTTAAAAATGTATTAG
1 AATTTTAAAAATGTATTAG
* *
112989 AATTTTTTTAAAAA-GTATCAA
1 AA---TTTTAAAAATGTATTAG
*
113010 AATTTTAAAAAT-TCTTAG
1 AATTTTAAAAATGTATTAG
113028 AAATTTTAAAA
1 -AATTTTAAAA
113039 TATTGTAAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
18 12 0.30
19 12 0.30
21 7 0.17
22 9 0.22
ACGTcount: A:0.49, C:0.03, G:0.06, T:0.42
Consensus pattern (19 bp):
AATTTTAAAAATGTATTAG
Found at i:112997 original size:22 final size:21
Alignment explanation
Indices: 112972--113015 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
112962 ATTTTTAAAA
* *
112972 TTTTAAAAATGTATTAGAATTT
1 TTTTAAAAA-GTATCAAAATTT
112994 TTTTAAAAAGTATCAAAATTT
1 TTTTAAAAAGTATCAAAATTT
113015 T
1 T
113016 AAAAATTCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (21 bp):
TTTTAAAAAGTATCAAAATTT
Found at i:113050 original size:19 final size:19
Alignment explanation
Indices: 113008--113051 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
112998 AAAAAGTATC
*
113008 AAAATTTTAAAAATTCTTA
1 AAAATTTTAAAAATTCGTA
*
113027 GAAATTTTAAAATATT-GTA
1 AAAATTTTAAAA-ATTCGTA
113046 AAAATT
1 AAAATT
113052 ATAGAATTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 18 0.86
20 3 0.14
ACGTcount: A:0.52, C:0.02, G:0.05, T:0.41
Consensus pattern (19 bp):
AAAATTTTAAAAATTCGTA
Found at i:120001 original size:14 final size:13
Alignment explanation
Indices: 119982--120016 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
119972 TTAGCCTTTT
119982 GGTTCAGGATTTCA
1 GGTTCAGGATTT-A
119996 GGTTCAGGATTTA
1 GGTTCAGGATTTA
*
120009 GATTCAGG
1 GGTTCAGG
120017 GTTCAAGATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.23, C:0.11, G:0.31, T:0.34
Consensus pattern (13 bp):
GGTTCAGGATTTA
Found at i:120055 original size:20 final size:20
Alignment explanation
Indices: 119981--120055 Score: 57
Period size: 20 Copynumber: 3.7 Consensus size: 20
119971 CTTAGCCTTT
*
119981 TGGTTCAGGATTTCAGGTTCA
1 TGGTTCAGGA-TTCGGGTTCA
*
120002 -GGATTTA-GATTCAGGGTTCA
1 TGG-TTCAGGATTC-GGGTTCA
* *
120022 AGATTCATGG-TTCGGGTTCA
1 TGGTTCA-GGATTCGGGTTCA
120042 TGGTTCAGGATTCG
1 TGGTTCAGGATTCG
120056 TAATTTAGGG
Statistics
Matches: 42, Mismatches: 6, Indels: 13
0.69 0.10 0.21
Matches are distributed among these distances:
19 5 0.12
20 29 0.69
21 7 0.17
22 1 0.02
ACGTcount: A:0.20, C:0.13, G:0.31, T:0.36
Consensus pattern (20 bp):
TGGTTCAGGATTCGGGTTCA
Found at i:124616 original size:17 final size:17
Alignment explanation
Indices: 124594--124632 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
124584 AGGTGGAGAA
* *
124594 CTTGTTCGTTGAGAGTT
1 CTTGTTCGTAGAGAATT
124611 CTTGTTCGTAGAGAATT
1 CTTGTTCGTAGAGAATT
124628 CTTGT
1 CTTGT
124633 CAAGGTGGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.15, C:0.13, G:0.26, T:0.46
Consensus pattern (17 bp):
CTTGTTCGTAGAGAATT
Found at i:128061 original size:20 final size:23
Alignment explanation
Indices: 128007--128058 Score: 63
Period size: 24 Copynumber: 2.3 Consensus size: 23
127997 TGTCTCCTAT
* *
128007 TCTTCTCCTTGTTAAACTTTGTTA
1 TCTTTTCCTAGTTAAACTTTG-TA
128031 TCTTTTCCTAGTTAAACTTTG-A
1 TCTTTTCCTAGTTAAACTTTGTA
128053 T-TTTTC
1 TCTTTTC
128059 TAGGATTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 5 0.19
22 2 0.08
24 19 0.73
ACGTcount: A:0.17, C:0.19, G:0.08, T:0.56
Consensus pattern (23 bp):
TCTTTTCCTAGTTAAACTTTGTA
Found at i:132970 original size:12 final size:12
Alignment explanation
Indices: 132953--132992 Score: 64
Period size: 12 Copynumber: 3.3 Consensus size: 12
132943 TTTTCGTAAC
132953 ATTCTCATTTCA
1 ATTCTCATTTCA
132965 ATTCTCATTTCA
1 ATTCTCATTTCA
132977 ATT-TCATTTCA
1 ATTCTCATTTCA
132988 TATTC
1 -ATTC
132993 AAATCATAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
11 8 0.31
12 18 0.69
ACGTcount: A:0.25, C:0.23, G:0.00, T:0.53
Consensus pattern (12 bp):
ATTCTCATTTCA
Found at i:132975 original size:35 final size:32
Alignment explanation
Indices: 132917--132980 Score: 83
Period size: 35 Copynumber: 1.9 Consensus size: 32
132907 AAAATGACTA
* *
132917 TAACATCTATTTCATTTCCATTTCCATTTTCG
1 TAACATCTATTTCAATTCCATTTCAATTTTCG
132949 TAACATTCTCATTTCAATTCTCATTTCAATTT
1 TAACA-TCT-ATTTCAATTC-CATTTCAATTT
132981 CATTTCATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
32 5 0.19
33 3 0.11
34 9 0.33
35 10 0.37
ACGTcount: A:0.25, C:0.23, G:0.02, T:0.50
Consensus pattern (32 bp):
TAACATCTATTTCAATTCCATTTCAATTTTCG
Found at i:134201 original size:14 final size:14
Alignment explanation
Indices: 134182--134212 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
134172 TTTTTTATTA
134182 TTACTATTTCTTAT
1 TTACTATTTCTTAT
134196 TTACTATTTCTTAT
1 TTACTATTTCTTAT
134210 TTA
1 TTA
134213 GTTTTTAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.23, C:0.13, G:0.00, T:0.65
Consensus pattern (14 bp):
TTACTATTTCTTAT
Found at i:135829 original size:19 final size:20
Alignment explanation
Indices: 135805--135851 Score: 69
Period size: 19 Copynumber: 2.4 Consensus size: 20
135795 TACTTTACCC
*
135805 TTAATTTTTTTTAT-GATTT
1 TTAATTATTTTTATAGATTT
135824 TTAATTATTTTTATAGATTT
1 TTAATTATTTTTATAGATTT
135844 TCTAATTA
1 T-TAATTA
135852 GTTTAAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 13 0.52
20 6 0.24
21 6 0.24
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.66
Consensus pattern (20 bp):
TTAATTATTTTTATAGATTT
Found at i:139057 original size:12 final size:12
Alignment explanation
Indices: 139037--139067 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
139027 TATTTTATGT
139037 AAATATATATAA
1 AAATATATATAA
*
139049 AAATTTATATAA
1 AAATATATATAA
139061 AAATATA
1 AAATATA
139068 AAGGTAAACT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (12 bp):
AAATATATATAA
Found at i:156115 original size:31 final size:31
Alignment explanation
Indices: 156080--156155 Score: 109
Period size: 31 Copynumber: 2.5 Consensus size: 31
156070 TATTATGTAT
*
156080 CAAATTAGGAAAAAGAGTCAAGTTCAGGTAC
1 CAAATTAGGAAAAAGAGTCAAGTTCAAGTAC
* *
156111 CAAATTAGGGAAAAGTGTCAAGTTCAAGTAC
1 CAAATTAGGAAAAAGAGTCAAGTTCAAGTAC
156142 CAAATT-GGATAAAA
1 CAAATTAGGA-AAAA
156156 AAAATTTAGA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 2 0.05
31 38 0.95
ACGTcount: A:0.46, C:0.12, G:0.21, T:0.21
Consensus pattern (31 bp):
CAAATTAGGAAAAAGAGTCAAGTTCAAGTAC
Found at i:156792 original size:61 final size:61
Alignment explanation
Indices: 156697--156819 Score: 237
Period size: 61 Copynumber: 2.0 Consensus size: 61
156687 GGAACATAAA
156697 ATTGTTACTATATAACTATTTGTCTGATACAAAACTGATCAATTCCCACTAATTTATGACC
1 ATTGTTACTATATAACTATTTGTCTGATACAAAACTGATCAATTCCCACTAATTTATGACC
*
156758 ATTGTTACTATATAACTATTTGTCTGATACAAAACTGGTCAATTCCCACTAATTTATGACC
1 ATTGTTACTATATAACTATTTGTCTGATACAAAACTGATCAATTCCCACTAATTTATGACC
156819 A
1 A
156820 CACAAACAGA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.34, C:0.20, G:0.09, T:0.37
Consensus pattern (61 bp):
ATTGTTACTATATAACTATTTGTCTGATACAAAACTGATCAATTCCCACTAATTTATGACC
Done.