genome.fa.s11057.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011057.1 Kokia drynarioides strain JFW-HI SEQ_126028, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  153329

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4033--4217	96	1.9	96	93	0	316	32	17	14	34	1.91
6151--6175	5	5.0	5	100	0	50	80	0	0	20	0.72
9723--9775	22	2.4	22	96	0	97	37	15	11	35	1.83
21509--21605	37	2.6	37	86	0	149	40	28	18	12	1.87
28669--28836	37	4.5	37	87	1	221	39	29	19	11	1.86
32626--32679	3	18.3	3	96	3	101	35	0	0	64	0.94
35534--35575	18	2.2	20	87	12	61	35	4	0	59	1.19
38059--38109	14	3.7	15	85	12	56	52	0	0	47	1.00
44242--44335	31	3.1	30	84	7	102	56	2	2	39	1.23
44309--44392	34	2.6	34	86	5	111	51	2	5	40	1.39
45586--45717	64	2.1	64	97	0	246	46	12	8	31	1.72
45725--45769	20	2.2	20	80	15	56	42	4	11	42	1.60
45730--45769	20	2.1	19	90	4	62	42	5	10	42	1.60
47647--47712	26	2.6	26	80	2	80	28	24	21	25	1.99
49591--49752	80	2.0	80	100	0	324	34	14	23	27	1.93
50698--50738	19	2.3	17	87	8	55	46	0	2	51	1.14
54133--54206	21	3.5	21	84	10	98	28	12	25	33	1.92
55685--56026	56	6.2	56	91	1	494	38	7	24	29	1.83
56511--56561	25	2.0	25	100	0	102	31	11	35	21	1.90
64818--64882	10	6.7	9	73	20	51	35	1	0	63	1.04
64857--64913	18	3.0	18	76	14	60	36	0	0	63	0.95
64858--64923	19	3.4	18	78	19	71	31	0	1	66	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67547--67643	47	2.1	47	82	3	115	54	20	4	20	1.61
68231--68283	24	2.2	25	86	3	72	43	5	15	35	1.70
69806--69988	9	20.0	9	69	14	63	24	3	18	54	1.58
69807--69936	36	3.7	37	78	18	118	23	3	18	53	1.60
69804--69941	5	28.4	5	68	20	64	23	3	19	53	1.60
75353--75450	23	4.2	23	71	17	76	13	27	19	39	1.89
75415--75489	39	1.9	39	88	0	114	12	22	24	41	1.87
76253--76300	21	2.3	21	100	0	96	29	16	22	31	1.96
77971--78012	21	2.0	20	86	4	57	54	0	0	45	0.99
79741--79843	30	3.4	31	72	4	111	24	16	12	46	1.81
79716--79822	31	3.7	29	67	13	76	24	14	12	48	1.78
79688--79858	60	2.9	58	84	7	220	23	13	12	50	1.75
87677--87944	134	2.0	132	82	7	317	42	4	16	36	1.68
88116--88149	16	2.1	16	89	10	52	32	0	0	67	0.91
88118--88156	20	2.0	19	85	14	53	35	0	0	64	0.94
112589--112627	18	2.2	18	86	9	53	20	0	2	76	0.90
114408--114532	62	2.0	62	100	0	250	22	40	16	20	1.92
116454--116510	5	11.4	5	76	0	60	36	7	17	38	1.77
116470--116526	25	2.3	25	87	0	78	35	8	17	38	1.81
116478--116533	25	2.2	25	83	0	67	33	7	19	39	1.79
121706--121749	23	2.0	22	86	4	61	38	0	15	45	1.47
136802--136941	40	3.5	40	80	1	129	37	18	20	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136841--137000	40	4.0	39	72	4	113	40	18	18	23	1.92
137957--138000	23	1.9	23	86	9	63	18	11	9	61	1.55
143255--143415	43	3.8	43	82	5	193	32	17	26	23	1.96
143661--143701	9	4.3	10	84	6	50	9	7	2	80	0.99

Tables:   1

The End!