Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011061.1 Kokia drynarioides strain JFW-HI SEQ_126032, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14207
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:4254 original size:40 final size:39

Alignment explanation


    Indices: 4210--4363  Score: 155
    Period size: 40  Copynumber: 3.8  Consensus size: 39

       4200 GTATCACTGA

                            *       *               
       4210 AGTGCAAATAGGGGCATGAATGTGTAAACAGCGGCACCGT
          1 AGTGCAAATAGGGGCACGAATGTGCAAACAG-GGCACCGT

                    *              *     **       * 
       4250 AGTGCAAAGAGGGGCACGAATGTACAAATTGGGGCACCAT
          1 AGTGCAAATAGGGGCACGAATGTGCAAA-CAGGGCACCGT

            *   *     *     *               *       
       4290 GGTGTAAATAAGGGCATGAATGTGCAAACAAGAGCACCGT
          1 AGTGCAAATAGGGGCACGAATGTGCAAAC-AGGGCACCGT

                        *                     
       4330 AGTGCAAATAGAAGGCACGAATGTGCAAACAGGG
          1 AGTGCAAATAG-GGGCACGAATGTGCAAACAGGG

       4364 ACACTTCATC


Statistics
Matches: 88,  Mismatches: 23, Indels: 6
        0.75            0.20        0.05

Matches are distributed among these distances:
  40   71  0.81
  41   17  0.19

ACGTcount: A:0.36, C:0.16, G:0.32, T:0.16


Consensus pattern (39 bp):   
AGTGCAAATAGGGGCACGAATGTGCAAACAGGGCACCGT
Done.