Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011062.1 Kokia drynarioides strain JFW-HI SEQ_126033, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3008
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29


Found at i:2817 original size:45 final size:45

Alignment explanation


    Indices: 2766--2978  Score: 320
    Period size: 45  Copynumber: 4.7  Consensus size: 45

       2756 ATCGCGATGC

                       *  *           **       *          
       2766 CTCGTCAAACTCAGCCTGATATCCTTCCCTAT-AGTATTGCGGTGG
          1 CTCGTCAAACTGAGGCTGATATCCTTGGCT-TGAGCATTGCGGTGG

                     *                                   
       2811 CTCGTCAAATTGAGGCTGATATCCTTGGCTTGAGCATTGCGGTGG
          1 CTCGTCAAACTGAGGCTGATATCCTTGGCTTGAGCATTGCGGTGG

                     *             *              *      
       2856 CTCGTCAAATTGAGGCTGATATCTTTGGCTTGAGCATTACGGTGG
          1 CTCGTCAAACTGAGGCTGATATCCTTGGCTTGAGCATTGCGGTGG

                                                   *     
       2901 CTCGTCAAACTGAGGCTGATATCCTTGGCTTGAGCATTGTGGTGG
          1 CTCGTCAAACTGAGGCTGATATCCTTGGCTTGAGCATTGCGGTGG

                                             
       2946 CTCGTCAAACTGAGGCTGATATCCTTGGCTTGA
          1 CTCGTCAAACTGAGGCTGATATCCTTGGCTTGA

       2979 TGAGCTATGC


Statistics
Matches: 155,  Mismatches: 12, Indels: 2
        0.92            0.07        0.01

Matches are distributed among these distances:
  44    1  0.01
  45  154  0.99

ACGTcount: A:0.19, C:0.22, G:0.27, T:0.31


Consensus pattern (45 bp):   
CTCGTCAAACTGAGGCTGATATCCTTGGCTTGAGCATTGCGGTGG

Done.