Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011063.1 Kokia drynarioides strain JFW-HI SEQ_126034, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 552818
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.33
Warning! 607 characters in sequence are not A, C, G, or T
File 1 of 3
Found at i:10758 original size:23 final size:22
Alignment explanation
Indices: 10687--10758 Score: 90
Period size: 23 Copynumber: 3.2 Consensus size: 22
10677 TTCGCACCTC
*
10687 GTGTGCCTACTGATTTGCACTAT
1 GTGTGCCTACTGA-TTGCACTGT
* * *
10710 GTGCGCCTAATGATTGCATTGT
1 GTGTGCCTACTGATTGCACTGT
10732 GTGTGCCTACTGGATTGCACTGT
1 GTGTGCCTACT-GATTGCACTGT
10755 GTGT
1 GTGT
10759 ACTTACTGTT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
22 16 0.39
23 25 0.61
ACGTcount: A:0.15, C:0.19, G:0.28, T:0.38
Consensus pattern (22 bp):
GTGTGCCTACTGATTGCACTGT
Found at i:12122 original size:19 final size:20
Alignment explanation
Indices: 12087--12124 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
12077 GATTTCACGA
*
12087 AAAAAGTCAATTGGTCAAAG
1 AAAAAGTCAACTGGTCAAAG
12107 AAAAAGTCAACT-GTCAAA
1 AAAAAGTCAACTGGTCAAA
12125 TTAACGGTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.53, C:0.13, G:0.16, T:0.18
Consensus pattern (20 bp):
AAAAAGTCAACTGGTCAAAG
Found at i:21106 original size:24 final size:24
Alignment explanation
Indices: 21074--21130 Score: 96
Period size: 24 Copynumber: 2.4 Consensus size: 24
21064 GATGTACAAA
*
21074 AAGGTGAACTCACCATGCGAGTTC
1 AAGGTGAACTCACCATGCAAGTTC
21098 AAGGTGAACTCACCATGCAAGTTC
1 AAGGTGAACTCACCATGCAAGTTC
*
21122 AAGATGAAC
1 AAGGTGAAC
21131 AGGTGACCTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.19
Consensus pattern (24 bp):
AAGGTGAACTCACCATGCAAGTTC
Found at i:23229 original size:17 final size:17
Alignment explanation
Indices: 23209--23241 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
23199 ATGATGCTTA
23209 GAAAAA-AAAAGAGAAAT
1 GAAAAAGAAAA-AGAAAT
23226 GAAAAAGAAAAAGAAA
1 GAAAAAGAAAAAGAAA
23242 AAAATAGAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (17 bp):
GAAAAAGAAAAAGAAAT
Found at i:28083 original size:21 final size:22
Alignment explanation
Indices: 28059--28102 Score: 63
Period size: 24 Copynumber: 2.0 Consensus size: 22
28049 CCAATTCAAG
28059 TATTT-AAACTACCGATACCTC
1 TATTTAAAACTACCGATACCTC
28080 TATTTACAAAACTACCGATACCT
1 TATTT--AAAACTACCGATACCT
28103 ATTATACAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 5 0.25
24 15 0.75
ACGTcount: A:0.36, C:0.27, G:0.05, T:0.32
Consensus pattern (22 bp):
TATTTAAAACTACCGATACCTC
Found at i:28805 original size:37 final size:37
Alignment explanation
Indices: 28764--28855 Score: 123
Period size: 36 Copynumber: 2.5 Consensus size: 37
28754 TCTTTATTCG
* *
28764 TTTTACTCCTTGTTGACCCCAAAGGTCATGATGCTCA
1 TTTTACTCCCTGTTGACCCCAAAGGTCATGACGCTCA
* *
28801 TTTTACTCCCTATTGA-CCCAAAGGTCATTACGCTCA
1 TTTTACTCCCTGTTGACCCCAAAGGTCATGACGCTCA
* *
28837 TTTTTCTCCCTGTTAACCC
1 TTTTACTCCCTGTTGACCC
28856 GTCATGCTTA
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
36 31 0.66
37 16 0.34
ACGTcount: A:0.21, C:0.30, G:0.12, T:0.37
Consensus pattern (37 bp):
TTTTACTCCCTGTTGACCCCAAAGGTCATGACGCTCA
Found at i:30337 original size:47 final size:47
Alignment explanation
Indices: 30268--30451 Score: 152
Period size: 49 Copynumber: 3.8 Consensus size: 47
30258 ATCCGGATAC
* **
30268 AATAAGATGGGTCGCTGGTAGGGCATGCTAGTTGCTAACCAAGTGGG
1 AATAAGATGGGTCACAAGTAGGGCATGCTAGTTGCTAACCAAGTGGG
* * **
30315 AATAAGATGGGTCACAAGTAGGGCATGTTAGTTGCTAACCAGAAATGTA
1 AATAAGATGGGTCACAAGTAGGGCATGCTAGTTGCTAACC--AAGTGGG
** ** * * * * *
30364 AATGTGATGGACCACTAGTAGGGCATGCTTGTTACTAACTAGGTGGGAG
1 AATAAGATGGGTCACAAGTAGGGCATGCTAGTTGCTAACCAAGT-GG-G
** * *
30413 AATAAGATGGGTCGTATGTAGGGCATGCTAATTGCTAAC
1 AATAAGATGGGTCACAAGTAGGGCATGCTAGTTGCTAAC
30452 TAGATTGGTG
Statistics
Matches: 102, Mismatches: 31, Indels: 6
0.73 0.22 0.04
Matches are distributed among these distances:
47 38 0.37
48 1 0.01
49 63 0.62
ACGTcount: A:0.30, C:0.14, G:0.31, T:0.26
Consensus pattern (47 bp):
AATAAGATGGGTCACAAGTAGGGCATGCTAGTTGCTAACCAAGTGGG
Found at i:38607 original size:17 final size:17
Alignment explanation
Indices: 38575--38624 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
38565 TTGTGAGGTA
*
38575 CTTTATTTAT-TTTATG
1 CTTTGTTTATCTTTATG
38591 CTTTGTTTATCTTTATG
1 CTTTGTTTATCTTTATG
*
38608 TTTTGTTGGTATCTTTA
1 CTTTGTT--TATCTTTA
38625 AATTTTGTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 9 0.31
17 12 0.41
19 8 0.28
ACGTcount: A:0.14, C:0.08, G:0.12, T:0.66
Consensus pattern (17 bp):
CTTTGTTTATCTTTATG
Found at i:38622 original size:19 final size:18
Alignment explanation
Indices: 38585--38636 Score: 61
Period size: 19 Copynumber: 2.9 Consensus size: 18
38575 CTTTATTTAT
*
38585 TTTATGCTTTGTT-TATC
1 TTTATGTTTTGTTGTATC
38602 TTTATGTTTTGTTGGTATC
1 TTTATGTTTTGTT-GTATC
**
38621 TTTAAATTTTGTTGTA
1 TTTATGTTTTGTTGTA
38637 ATACTTGAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
17 12 0.40
18 3 0.10
19 15 0.50
ACGTcount: A:0.15, C:0.06, G:0.15, T:0.63
Consensus pattern (18 bp):
TTTATGTTTTGTTGTATC
Found at i:38971 original size:16 final size:16
Alignment explanation
Indices: 38950--38984 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
38940 ATTGAATAAA
38950 TTTTAACAAAAAATAT
1 TTTTAACAAAAAATAT
* *
38966 TTTTAACATACAATAT
1 TTTTAACAAAAAATAT
38982 TTT
1 TTT
38985 CTTTCACCTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.46, C:0.09, G:0.00, T:0.46
Consensus pattern (16 bp):
TTTTAACAAAAAATAT
Found at i:41556 original size:12 final size:12
Alignment explanation
Indices: 41539--41569 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
41529 GCTTAAGTTG
41539 TGGATTTAGTCT
1 TGGATTTAGTCT
41551 TGGATTTAGTCT
1 TGGATTTAGTCT
*
41563 TGTATTT
1 TGGATTT
41570 TTCGAATTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.16, C:0.06, G:0.23, T:0.55
Consensus pattern (12 bp):
TGGATTTAGTCT
Found at i:43557 original size:140 final size:140
Alignment explanation
Indices: 43305--43585 Score: 562
Period size: 140 Copynumber: 2.0 Consensus size: 140
43295 ATTTGGTGGA
43305 TGCTTGGTTCTTTTGCCGATTTATGCCCGTCGCTTTGGACCATCCGAGGTTGATTTCCTTATTGT
1 TGCTTGGTTCTTTTGCCGATTTATGCCCGTCGCTTTGGACCATCCGAGGTTGATTTCCTTATTGT
43370 ATTAAGTGCTTACAATCACTCATGATATGTTGTGCTTGAGTTATGACAGAGTCAATTGTCAACGT
66 ATTAAGTGCTTACAATCACTCATGATATGTTGTGCTTGAGTTATGACAGAGTCAATTGTCAACGT
43435 GTCATAATGT
131 GTCATAATGT
43445 TGCTTGGTTCTTTTGCCGATTTATGCCCGTCGCTTTGGACCATCCGAGGTTGATTTCCTTATTGT
1 TGCTTGGTTCTTTTGCCGATTTATGCCCGTCGCTTTGGACCATCCGAGGTTGATTTCCTTATTGT
43510 ATTAAGTGCTTACAATCACTCATGATATGTTGTGCTTGAGTTATGACAGAGTCAATTGTCAACGT
66 ATTAAGTGCTTACAATCACTCATGATATGTTGTGCTTGAGTTATGACAGAGTCAATTGTCAACGT
43575 GTCATAATGT
131 GTCATAATGT
43585 T
1 T
43586 CTATTGATGT
Statistics
Matches: 141, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
140 141 1.00
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.40
Consensus pattern (140 bp):
TGCTTGGTTCTTTTGCCGATTTATGCCCGTCGCTTTGGACCATCCGAGGTTGATTTCCTTATTGT
ATTAAGTGCTTACAATCACTCATGATATGTTGTGCTTGAGTTATGACAGAGTCAATTGTCAACGT
GTCATAATGT
Found at i:45331 original size:90 final size:90
Alignment explanation
Indices: 45168--45403 Score: 337
Period size: 90 Copynumber: 2.6 Consensus size: 90
45158 ACCAGTACAT
* * * * *
45168 GATGCTGCTCACACTAGCTGTTAAGGACTCGCAACATATGCGATACCTCAACCATCGATACGATA
1 GATGATGCTCACACGAGCTGTCAAGGACTCGTAACATATGCGATACCTCAACCATCAATACGATA
*
45233 TCTGTGCATATAACTATTCCCTAAC
66 TCTATGCATATAACTATTCCCTAAC
* * *
45258 GATGATGCTCACACGAGCTGTCAAGGACTCGTAACCTATGCGATACCTCAGCCATCAATACGGTA
1 GATGATGCTCACACGAGCTGTCAAGGACTCGTAACATATGCGATACCTCAACCATCAATACGATA
* *
45323 TCTATGCATATAACTGTTCCCTAAT
66 TCTATGCATATAACTATTCCCTAAC
* * * *
45348 GATGTTGCTCACACGAGCTGTCGAGGACTCGTAACATATGTGGTACCTCAACCATC
1 GATGATGCTCACACGAGCTGTCAAGGACTCGTAACATATGCGATACCTCAACCATC
45404 GCGTCGGTTT
Statistics
Matches: 129, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
90 129 1.00
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.26
Consensus pattern (90 bp):
GATGATGCTCACACGAGCTGTCAAGGACTCGTAACATATGCGATACCTCAACCATCAATACGATA
TCTATGCATATAACTATTCCCTAAC
Found at i:48265 original size:29 final size:29
Alignment explanation
Indices: 48223--48282 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
48213 TTTGATGATC
* *
48223 GTTTCTTCTTCTAAATCTGATTTTTCCTT
1 GTTTCTTCTTCTAAATATGATTTTCCCTT
48252 GTTTCTTCTTCTAAATATGATTTTCCCTT
1 GTTTCTTCTTCTAAATATGATTTTCCCTT
48281 GT
1 GT
48283 CAAATTATAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.15, C:0.20, G:0.08, T:0.57
Consensus pattern (29 bp):
GTTTCTTCTTCTAAATATGATTTTCCCTT
Found at i:50386 original size:21 final size:20
Alignment explanation
Indices: 50347--50408 Score: 56
Period size: 21 Copynumber: 3.1 Consensus size: 20
50337 GGAAAAAGAC
* *
50347 AAAATAATTTTATATTTTTAA
1 AAAATAA-TTAATAATTTTAA
50368 AAAATAATATAATAATTTTAA
1 AAAATAAT-TAATAATTTTAA
* *
50389 TAACT--TTAATAATTTTAA
1 AAAATAATTAATAATTTTAA
50407 AA
1 AA
50409 TAATCGATTG
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
18 13 0.37
19 1 0.03
20 1 0.03
21 20 0.57
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (20 bp):
AAAATAATTAATAATTTTAA
Found at i:50391 original size:9 final size:9
Alignment explanation
Indices: 50377--50406 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
50367 AAAAATAATA
50377 TAATAATTT
1 TAATAATTT
*
50386 TAATAACTT
1 TAATAATTT
50395 TAATAATTT
1 TAATAATTT
50404 TAA
1 TAA
50407 AATAATCGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (9 bp):
TAATAATTT
Found at i:50808 original size:19 final size:18
Alignment explanation
Indices: 50762--50810 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 18
50752 TTTTTAAATT
* *
50762 TTTTAATAATTTATATAA
1 TTTTAAAAACTTATATAA
**
50780 TTTTCTAAACTTATAATAA
1 TTTTAAAAACTTAT-ATAA
50799 TTTTAAAAACTT
1 TTTTAAAAACTT
50811 TTTTATAAAC
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
18 10 0.42
19 14 0.58
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTTAAAAACTTATATAA
Found at i:53482 original size:31 final size:31
Alignment explanation
Indices: 53440--53532 Score: 120
Period size: 31 Copynumber: 3.0 Consensus size: 31
53430 CATGGGCATC
53440 AATTATACATATTCACATTATCATACCCTGT
1 AATTATACATATTCACATTATCATACCCTGT
* *
53471 AATTATTCATATTCACATGT-TCATACCCTAT
1 AATTATACATATTCACAT-TATCATACCCTGT
*
53502 AATTATCCATAGTT-ACA-TATCATACCCTGT
1 AATTATACATA-TTCACATTATCATACCCTGT
53532 A
1 A
53533 CCATTTCATA
Statistics
Matches: 55, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
29 1 0.02
30 11 0.20
31 40 0.73
32 3 0.05
ACGTcount: A:0.34, C:0.23, G:0.04, T:0.39
Consensus pattern (31 bp):
AATTATACATATTCACATTATCATACCCTGT
Found at i:63479 original size:21 final size:21
Alignment explanation
Indices: 63432--63473 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
63422 ACCACACGTT
63432 CGTGTGGCTA-TCCCACATGCC
1 CGTGTGGCTACTCCCACAT-CC
63453 CGTGTGGCTACTCCACACATC
1 CGTGTGGCTACTCC-CACATC
63474 TGTGTGTCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 10 0.53
22 4 0.21
23 5 0.26
ACGTcount: A:0.17, C:0.38, G:0.21, T:0.24
Consensus pattern (21 bp):
CGTGTGGCTACTCCCACATCC
Found at i:64428 original size:34 final size:34
Alignment explanation
Indices: 64363--64437 Score: 96
Period size: 34 Copynumber: 2.2 Consensus size: 34
64353 GGATACAAGT
* * *
64363 AGCACACCAGATGCTCGTATGAGCCAGTCCATCC
1 AGCACACCAAATGCTCGTAAGAGCCAATCCATCC
* *
64397 AGCATACCAAATGCTCGTAAGAGCTAATCCATCC
1 AGCACACCAAATGCTCGTAAGAGCCAATCCATCC
*
64431 AACACAC
1 AGCACAC
64438 AAAAGCACTG
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.33, C:0.33, G:0.16, T:0.17
Consensus pattern (34 bp):
AGCACACCAAATGCTCGTAAGAGCCAATCCATCC
Found at i:69296 original size:17 final size:17
Alignment explanation
Indices: 69269--69359 Score: 103
Period size: 17 Copynumber: 5.3 Consensus size: 17
69259 TTTAAAATGG
*
69269 ATTTAATTTTAAATTTGA
1 ATTT-ATTTTAAATTTAA
*
69287 ATTTACTTTAAATTTAAA
1 ATTTATTTTAAATTT-AA
* * **
69305 ACTTATTTTGAATTTGT
1 ATTTATTTTAAATTTAA
69322 ATTTATTTTAAATTTAA
1 ATTTATTTTAAATTTAA
69339 ATTTATTTTAAA-TTAA
1 ATTTATTTTAAATTTAA
69355 ATTTA
1 ATTTA
69360 AATTTTAAAA
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
16 9 0.15
17 35 0.57
18 17 0.28
ACGTcount: A:0.38, C:0.02, G:0.03, T:0.56
Consensus pattern (17 bp):
ATTTATTTTAAATTTAA
Found at i:69302 original size:6 final size:6
Alignment explanation
Indices: 69269--69364 Score: 58
Period size: 6 Copynumber: 16.7 Consensus size: 6
69259 TTTAAAATGG
* * * * * *
69269 ATTTAA TTTTAA ATTTGA ATTT-A CTTTAA ATTTAAA ACTT-A TTTTGA
1 ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTT-AA ATTTAA ATTTAA
** * *
69316 ATTTGT ATTT-A TTTTAA ATTTAA ATTT-A TTTTAA A-TTAA ATTTAA
1 ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA
69361 ATTT
1 ATTT
69365 TAAAAGTTCA
Statistics
Matches: 69, Mismatches: 15, Indels: 12
0.72 0.16 0.12
Matches are distributed among these distances:
5 19 0.28
6 45 0.65
7 5 0.07
ACGTcount: A:0.39, C:0.02, G:0.03, T:0.56
Consensus pattern (6 bp):
ATTTAA
Found at i:69319 original size:35 final size:34
Alignment explanation
Indices: 69274--69352 Score: 113
Period size: 35 Copynumber: 2.3 Consensus size: 34
69264 AATGGATTTA
69274 ATTTTAAATTTGAATTTACTTTAAATTTAAAACTT
1 ATTTTAAATTTGAATTTACTTTAAATTT-AAACTT
* * * *
69309 ATTTTGAATTTGTATTTATTTTAAATTTAAATTT
1 ATTTTAAATTTGAATTTACTTTAAATTTAAACTT
69343 ATTTTAAATT
1 ATTTTAAATT
69353 AAATTTAAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
34 14 0.36
35 25 0.64
ACGTcount: A:0.37, C:0.03, G:0.04, T:0.57
Consensus pattern (34 bp):
ATTTTAAATTTGAATTTACTTTAAATTTAAACTT
Found at i:69348 original size:11 final size:11
Alignment explanation
Indices: 69269--69364 Score: 52
Period size: 11 Copynumber: 8.4 Consensus size: 11
69259 TTTAAAATGG
69269 ATTTAATTTTAA
1 ATTTAA-TTTAA
69281 ATTTGAATTT-A
1 ATTT-AATTTAA
*
69292 CTTTAAATTTAAA
1 ATTT-AATTT-AA
* * *
69305 ACTTATTTTGA
1 ATTTAATTTAA
*
69316 ATTTGTATTT-A
1 ATTT-AATTTAA
*
69327 TTTTAAATTTAA
1 ATTT-AATTTAA
*
69339 ATTTATTTTAA
1 ATTTAATTTAA
*
69350 ATTAAATTTAA
1 ATTTAATTTAA
69361 ATTT
1 ATTT
69365 TAAAAGTTCA
Statistics
Matches: 62, Mismatches: 17, Indels: 11
0.69 0.19 0.12
Matches are distributed among these distances:
11 39 0.63
12 18 0.29
13 5 0.08
ACGTcount: A:0.39, C:0.02, G:0.03, T:0.56
Consensus pattern (11 bp):
ATTTAATTTAA
Found at i:69385 original size:23 final size:24
Alignment explanation
Indices: 69359--69406 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
69349 AATTAAATTT
* *
69359 AAATTTTAAAAGTTCAAA-TACAA
1 AAATTTCAAAAGTCCAAATTACAA
*
69382 AAATTTCAAATGTCCAAATTACAA
1 AAATTTCAAAAGTCCAAATTACAA
69406 A
1 A
69407 TTTTTGAGCC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 15 0.71
24 6 0.29
ACGTcount: A:0.54, C:0.12, G:0.04, T:0.29
Consensus pattern (24 bp):
AAATTTCAAAAGTCCAAATTACAA
Found at i:71137 original size:30 final size:30
Alignment explanation
Indices: 71099--71360 Score: 213
Period size: 29 Copynumber: 8.9 Consensus size: 30
71089 CCCAAAAGGT
*
71099 CCCT-AAACTTTCCAAAAATTATATTTTGA
1 CCCTCAAACTTTCCAAAAATTACATTTTGA
* *
71128 CCCTCAAACTTTTCAAAAA-TACATGTTGA
1 CCCTCAAACTTTCCAAAAATTACATTTTGA
* ** * *
71157 CCC-CGAACTTTTAAAAAATCACATTTTAA
1 CCCTCAAACTTTCCAAAAATTACATTTTGA
*
71186 CCCT-AAACTTTCCAAAAATTACATTTTTA
1 CCCTCAAACTTTCCAAAAATTACATTTTGA
* ** * *
71215 CGCTCGATCCTCTCC-AAAATTACATTTTTA
1 CCCTC-AAACTTTCCAAAAATTACATTTTGA
* * *
71245 CCC-CTAAAGTTTCCAAAAATTACTTTTTTA
1 CCCTC-AAACTTTCCAAAAATTACATTTTGA
71275 CCCTCAAAC-TTCCAAAAATTACCATTTTG-
1 CCCTCAAACTTTCCAAAAATTA-CATTTTGA
* * *
71304 CCCTCGAA-TTTCCAAAAAGTCACGTTTTCGA
1 CCCTCAAACTTTCCAAAAA-TTACATTTT-GA
*
71335 -CCTTAAACTTTCC-AAAATTACATTTT
1 CCCTCAAACTTTCCAAAAATTACATTTT
71361 CATCCCGAAC
Statistics
Matches: 186, Mismatches: 34, Indels: 26
0.76 0.14 0.11
Matches are distributed among these distances:
28 13 0.07
29 94 0.51
30 67 0.36
31 12 0.06
ACGTcount: A:0.35, C:0.26, G:0.05, T:0.35
Consensus pattern (30 bp):
CCCTCAAACTTTCCAAAAATTACATTTTGA
Found at i:71301 original size:60 final size:60
Alignment explanation
Indices: 71103--71302 Score: 162
Period size: 60 Copynumber: 3.4 Consensus size: 60
71093 AAAGGTCCCT
* * * * * *
71103 AAACTTTCCAAAAATTATA-TTTTGACCCTCAAACTTTTCAAAAA-TACATGTTGACCC-CG
1 AAACTCTCC-AAAATTACATTTTTAACCCT-AAACTTTCCAAAAATTACATTTTTACCCTCG
* ** * *
71162 -AACTTTTAAAAAATCACA-TTTTAACCCTAAACTTTCCAAAAATTACATTTTTACGCTCG
1 AAAC-TCTCCAAAATTACATTTTTAACCCTAAACTTTCCAAAAATTACATTTTTACCCTCG
** * * *
71221 ATCCTCTCCAAAATTACATTTTTACCCCTAAAGTTTCCAAAAATTACTTTTTTACCCTC-
1 AAACTCTCCAAAATTACATTTTTAACCCTAAACTTTCCAAAAATTACATTTTTACCCTCG
71280 AAACT-TCCAAAAATTACCATTTT
1 AAACTCTCC-AAAATTA-CATTTT
71303 GCCCTCGAAT
Statistics
Matches: 113, Mismatches: 21, Indels: 13
0.77 0.14 0.09
Matches are distributed among these distances:
57 13 0.12
58 32 0.28
59 25 0.22
60 43 0.38
ACGTcount: A:0.36, C:0.24, G:0.04, T:0.35
Consensus pattern (60 bp):
AAACTCTCCAAAATTACATTTTTAACCCTAAACTTTCCAAAAATTACATTTTTACCCTCG
Found at i:71806 original size:98 final size:97
Alignment explanation
Indices: 71639--71818 Score: 297
Period size: 98 Copynumber: 1.8 Consensus size: 97
71629 AAAATATTTA
* *
71639 AAATCGAGGTAATATTCCTTTATTTCGGGTTTTGAAAATTCGTGCCTTAACTTACTAGGCATGAT
1 AAATCGAGGTAATATTCCTTTATTTCGGGTTTTGAAAATTCGTGCCTTAACTTACTAGGCACGAC
71704 TTTTCTTCAAACCGGGACAATTGAATACCTTT
66 TTTTCTTCAAACCGGGACAATTGAATACCTTT
* * *
71736 AAATCGAGGTAATATTCCTTTATTTCGAGTTTTTGAAAATTTGTGCCTTAACTTACTAGGCGCGA
1 AAATCGAGGTAATATTCCTTTATTTCG-GGTTTTGAAAATTCGTGCCTTAACTTACTAGGCACGA
*
71801 CTTTTCTTCAAATCGGGA
65 CTTTTCTTCAAACCGGGA
71819 TGATCAAATA
Statistics
Matches: 76, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
97 27 0.36
98 49 0.64
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.38
Consensus pattern (97 bp):
AAATCGAGGTAATATTCCTTTATTTCGGGTTTTGAAAATTCGTGCCTTAACTTACTAGGCACGAC
TTTTCTTCAAACCGGGACAATTGAATACCTTT
Found at i:75399 original size:12 final size:12
Alignment explanation
Indices: 75382--75408 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
75372 ACGTGTTTTA
75382 AAAAAAGAAAGG
1 AAAAAAGAAAGG
75394 AAAAAAGAAAGG
1 AAAAAAGAAAGG
75406 AAA
1 AAA
75409 GTCAAGACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (12 bp):
AAAAAAGAAAGG
Found at i:77384 original size:99 final size:95
Alignment explanation
Indices: 77281--77556 Score: 250
Period size: 99 Copynumber: 2.8 Consensus size: 95
77271 GAATCAAATT
*
77281 CCTAAGAAGATGTGATGGGAAACGTTAAGGTCATAACAGCGAACTCGATACCATGAAGATGTAAA
1 CCTAA-AAGATGTGATGGGAAA-GTTGAGGTCATAAC-GCGAACTCGATACCATGAA-ATGTAAA
*
77346 GGGAAAGGTTGAGGCCGTAACGGCGAACCCAGTA
62 GGGAAAGGTTGAGGCCGTAACAGCGAACCCAGTA
* * ** * *
77380 CCTAAAAATATGTGATGGGAAAGGTTGAGGCCGCAATGGCGAACTC-AGTACCATGAAAAGATAA
1 CCT-AAAAGATGTGATGGGAAA-GTTGAGGTCATAA-CGCGAACTCGA-TACCATGAAATG-TAA
* * * * **
77444 AGGAAAAGATTGAGGCCGTGACAGCGAATCTGGTA
61 AGGGAAAGGTTGAGGCCGTAACAGCGAACCCAGTA
* * * *
77479 CCTTAAAAGATGTGATGGGAAAGATTGAGGTCCTAACG-GTAAATCCGATACCATGAAATGCAAT
1 CC-TAAAAGATGTGATGGGAAAG-TTGAGGTCATAACGCG-AACT-CGATACCATGAAATGTAAA
*
77543 GGGAAATGTTGAGG
62 GGGAAAGGTTGAGG
77557 TCGCAATGGT
Statistics
Matches: 141, Mismatches: 27, Indels: 19
0.75 0.14 0.10
Matches are distributed among these distances:
97 1 0.01
98 21 0.15
99 115 0.82
100 4 0.03
ACGTcount: A:0.37, C:0.15, G:0.29, T:0.19
Consensus pattern (95 bp):
CCTAAAAGATGTGATGGGAAAGTTGAGGTCATAACGCGAACTCGATACCATGAAATGTAAAGGGA
AAGGTTGAGGCCGTAACAGCGAACCCAGTA
Found at i:77404 original size:50 final size:50
Alignment explanation
Indices: 77193--77809 Score: 265
Period size: 50 Copynumber: 12.5 Consensus size: 50
77183 TCTACAAGTT
* * **
77193 TGATAGGGAAAGGTTGAGGCCGCAACGGCGAACCTGGTACC-ATGAAGA-G
1 TGAT-GGGAAAGGTTGAGGCCGCAACGGTGAACCCGGTACCTAAAAAGATG
* * * * * *** * *
77242 ATGAAGGG-AAGGATTGAGGCCACGATGGTGAATCAAATTCCTAAGAAGATG
1 -TGATGGGAAAGG-TTGAGGCCGCAACGGTGAACCCGGTACCTAAAAAGATG
* * * ** * * * * **
77293 TGATGGGAAACGTTAAGGTCATAACAGCGAACTCGATACC-ATGAAGATG
1 TGATGGGAAAGGTTGAGGCCGCAACGGTGAACCCGGTACCTAAAAAGATG
* * * * * *
77342 TAAAGGGAAAGGTTGAGGCCGTAACGGCGAACCCAGTACCTAAAAATATG
1 TGATGGGAAAGGTTGAGGCCGCAACGGTGAACCCGGTACCTAAAAAGATG
* * * * *
77392 TGATGGGAAAGGTTGAGGCCGCAATGGCGAACTCAGTACCATGAAAAGA--
1 TGATGGGAAAGGTTGAGGCCGCAACGGTGAACCCGGTACC-TAAAAAGATG
* * * * ** * * * * *
77441 TAAAGGAAAAGATTGAGGCCGTGACAGCGAATCTGGTACCTTAAAAGATG
1 TGATGGGAAAGGTTGAGGCCGCAACGGTGAACCCGGTACCTAAAAAGATG
* * * * * **
77491 TGATGGGAAAGATTGAGGTCC-TAACGGTAAATCCGATACC-ATGAA-ATG
1 TGATGGGAAAGGTTGAGG-CCGCAACGGTGAACCCGGTACCTAAAAAGATG
** * * * **
77539 CAATGGGAAATGTTGAGGTCGCAATGGTGAACCCGGTA-CTATGAAGA-G
1 TGATGGGAAAGGTTGAGGCCGCAACGGTGAACCCGGTACCTAAAAAGATG
* * * * * *
77587 ATAAAGGG-AAGGATTGAGGCCACAACGGTGAATCCGGTACCTTAGAAGATG
1 -TGATGGGAAAGG-TTGAGGCCGCAACGGTGAACCCGGTACCTAAAAAGATG
* * * **
77638 TGATGGGAAAGATTGAGGCCGCAACGGTGAATCTGGTACC-ATGAA-ATG
1 TGATGGGAAAGGTTGAGGCCGCAACGGTGAACCCGGTACCTAAAAAGATG
* * * *
77686 TGATAGGAAAGGTTGAGGCCACAACGGTGAACCTGGTACCTTAAAAGATG
1 TGATGGGAAAGGTTGAGGCCGCAACGGTGAACCCGGTACCTAAAAAGATG
*** * * * * **
77736 TGACAAGAAAGGTTGAGGCCGTAACAGCGAACTCGGTACCTTAAAAA-ACA
1 TGATGGGAAAGGTTGAGGCCGCAACGGTGAACCCGGTACC-TAAAAAGATG
* * *
77786 AGATGGAAAAGGTTGAAGCCGCAA
1 TGATGGGAAAGGTTGAGGCCGCAA
77810 TGGCGAATCT
Statistics
Matches: 425, Mismatches: 122, Indels: 40
0.72 0.21 0.07
Matches are distributed among these distances:
47 2 0.00
48 88 0.21
49 123 0.29
50 191 0.45
51 21 0.05
ACGTcount: A:0.35, C:0.16, G:0.30, T:0.18
Consensus pattern (50 bp):
TGATGGGAAAGGTTGAGGCCGCAACGGTGAACCCGGTACCTAAAAAGATG
Found at i:77715 original size:147 final size:147
Alignment explanation
Indices: 77335--77734 Score: 444
Period size: 147 Copynumber: 2.7 Consensus size: 147
77325 TCGATACCAT
* * * * * * **
77335 GAAGATGTAAAGGGAAAGGTTGAGGCCGTAACGGCGAACCCAGTACCTAAAAATATGTGATGGGA
1 GAAGATGTGATGGGAAAGATTGAGGCCGTAACGGTGAATCCGGTACC-ATGAA-ATGTGATGGGA
* * * ***
77400 AAGGTTGAGGCCGCAATGGCGAACTCAGTACCATGAAAAGATAAAGGAAAAGATTGAGGCCGTGA
64 AAGGTTGAGGCCGCAATGGTGAACCCGGTACCATGAAAAGATAAAGGAAAAGATTGAGGCCACAA
*
77465 CAGCGAATCTGGTACCTTA
129 CAGCGAATCCGGTACCTTA
* * * **
77484 AAAGATGTGATGGGAAAGATTGAGGTCC-TAACGGTAAATCCGATACCATGAAATGCAATGGGAA
1 GAAGATGTGATGGGAAAGATTGAGG-CCGTAACGGTGAATCCGGTACCATGAAATGTGATGGGAA
* * * * * *
77548 ATGTTGAGGTCGCAATGGTGAACCCGGTACTATGAAGAGATAAAGGGAAGGATTGAGGCCACAAC
65 AGGTTGAGGCCGCAATGGTGAACCCGGTACCATGAAAAGATAAAGGAAAAGATTGAGGCCACAAC
* *
77613 GGTGAATCCGGTACCTTA
130 AGCGAATCCGGTACCTTA
* * *
77631 GAAGATGTGATGGGAAAGATTGAGGCCGCAACGGTGAATCTGGTACCATGAAATGTGATAGGAAA
1 GAAGATGTGATGGGAAAGATTGAGGCCGTAACGGTGAATCCGGTACCATGAAATGTGATGGGAAA
* * * *
77696 GGTTGAGGCCACAACGGTGAACCTGGTACC-TTAAAAGAT
66 GGTTGAGGCCGCAATGGTGAACCCGGTACCATGAAAAGAT
77735 GTGACAAGAA
Statistics
Matches: 205, Mismatches: 44, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
146 9 0.04
147 156 0.76
148 3 0.01
149 35 0.17
150 2 0.01
ACGTcount: A:0.35, C:0.15, G:0.30, T:0.19
Consensus pattern (147 bp):
GAAGATGTGATGGGAAAGATTGAGGCCGTAACGGTGAATCCGGTACCATGAAATGTGATGGGAAA
GGTTGAGGCCGCAATGGTGAACCCGGTACCATGAAAAGATAAAGGAAAAGATTGAGGCCACAACA
GCGAATCCGGTACCTTA
Found at i:77774 original size:98 final size:99
Alignment explanation
Indices: 77595--77775 Score: 251
Period size: 98 Copynumber: 1.8 Consensus size: 99
77585 AGATAAAGGG
* ***
77595 AAGGATTGAGGCCACAACGGTGAATCCGGTACCTTAGAAGATGTGATGGGAAAGATTGAGGCCGC
1 AAGGATTGAGGCCACAACGGTGAATCCGGTACCTTAAAAGATGTGACAAGAAAGATTGAGGCCGC
* *
77660 AACGGTGAATCTGGTACCATGAAATGTGATAGGA
66 AACAGCGAATCTGGTACCATGAAATGTGATAGGA
*
77694 AAGG-TTGAGGCCACAACGGTGAA-CCTGGTACCTTAAAAGATGTGACAAGAAAGGTTGAGGCCG
1 AAGGATTGAGGCCACAACGGTGAATCC-GGTACCTTAAAAGATGTGACAAGAAAGATTGAGGCCG
*
77757 TAACAGCGAA-CTCGGTACC
65 CAACAGCGAATCT-GGTACC
77776 TTAAAAAACA
Statistics
Matches: 72, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
97 4 0.06
98 64 0.89
99 4 0.06
ACGTcount: A:0.33, C:0.18, G:0.31, T:0.19
Consensus pattern (99 bp):
AAGGATTGAGGCCACAACGGTGAATCCGGTACCTTAAAAGATGTGACAAGAAAGATTGAGGCCGC
AACAGCGAATCTGGTACCATGAAATGTGATAGGA
Found at i:78096 original size:41 final size:41
Alignment explanation
Indices: 78015--78111 Score: 113
Period size: 41 Copynumber: 2.4 Consensus size: 41
78005 TACATCATCA
* * * * *
78015 TTCAGTCTTTTACCCTTAGTTAAGAAGGGTAGATTAAAGAT
1 TTCAGTCTTTTACCCTTAATCAAGAAGGGCAAAATAAAGAT
* * *
78056 TTCGGTCTTTTACCCTTAATCAAGAGGGGCAAAATGAAGAT
1 TTCAGTCTTTTACCCTTAATCAAGAAGGGCAAAATAAAGAT
*
78097 TTCAATCTTTTACCC
1 TTCAGTCTTTTACCC
78112 CGAGCTTGAG
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
41 46 1.00
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.35
Consensus pattern (41 bp):
TTCAGTCTTTTACCCTTAATCAAGAAGGGCAAAATAAAGAT
Found at i:79011 original size:209 final size:208
Alignment explanation
Indices: 78274--79016 Score: 988
Period size: 209 Copynumber: 3.6 Consensus size: 208
78264 AGCGGTTACT
* * * *
78274 TTCCTGATGAGATACAGAGAAGTGAACCAAATCCATCTTCTTGATGAGATACAGAGAAGTGGATC
1 TTCCTGATGAGATACAGAGAAGCGAACCAAATCCATCTTCCTGATGAGATACAGAGAAGCGGATT
* * * * * * *
78339 AAAACGAGTGAGGCGGTCACCTTCTTTATGAGATACAGAGAAGTATACCAAAACAATGAAACAAA
66 AAAACAAGTGATGCGGTCATCTTCCTAATGAGATACAGAGAAGTAGACCAAATCAATGAAACAAA
*
78404 GCTCAATGTGAGTGAAACTTCGAACCCCAACTTCCTGATGAGGTACTGAGAAGCAGGTCGAAGCA
131 GCTCAATGTGAGTGAAACTTCGAACCCCAACTTCCTGATGAGATACTGAGAAGCA-GTCGAAGCA
*
78469 ATAAAATGGTCGTC
195 ATAAAGTGGTCGTC
* * * * * * *
78483 TTCCTGATGGGATATAGAGAA-CTGGACCAAATCCGTCTTCCTGATGAGATACAAAAAAACGGAT
1 TTCCTGATGAGATACAGAGAAGC-GAACCAAATCCATCTTCCTGATGAGATACAGAGAAGCGGAT
* * *
78547 TAAAACAGGTGATACGGTCATCTTCCTGATGAGATACAGAGAAGTATG-CCAAATCAATGAAACA
65 TAAAACAAGTGATGCGGTCATCTTCCTAATGAGATACAGAGAAGTA-GACCAAATCAATGAAACA
* * * *
78611 AAGATCAATGTGAGTGAAACTTCGAATCCCAGCTTCTTGATGAGATACTGAGAAGCAAGTCGAAG
129 AAGCTCAATGTGAGTGAAACTTCGAACCCCAACTTCCTGATGAGATACTGAGAAGC-AGTCGAAG
*
78676 CAATAAAGTGGTTGTC
193 CAATAAAGTGGTCGTC
* * * * * * *
78692 TTCATGCTGGGATACAGAGAAGTGGACCAAATCCGTCTTCCTGATGAGATACAGAGAAGCAGATT
1 TTCCTGATGAGATACAGAGAAGCGAACCAAATCCATCTTCCTGATGAGATACAGAGAAGCGGATT
* * * *
78757 AAAACAAGTGATGTGGTCATCTTCCTAATGAGATA-ATAAGAAGTAGATCAAATCAAGGAAACAA
66 AAAACAAGTGATGCGGTCATCTTCCTAATGAGATACA-GAGAAGTAGACCAAATCAATGAAACAA
* * *
78821 AGCTCAATGTGAGCGAAACTTCGAACCCCAACCTCCTGATGAGATACTGAGAAGCGAGTTGAAGC
130 AGCTCAATGTGAGTGAAACTTCGAACCCCAACTTCCTGATGAGATACTGAGAAGC-AGTCGAAGC
* *
78886 AATAAAGCGATCGTC
194 AATAAAGTGGTCGTC
*
78901 TTCCTGATAAGATACAGAGAAGCGAACCAAATCCATCTTCCTGATGAGATACAGAGAAGCGGATT
1 TTCCTGATGAGATACAGAGAAGCGAACCAAATCCATCTTCCTGATGAGATACAGAGAAGCGGATT
* *
78966 AAAACAAGTGATGCAGTCATCTTCCTAATAAGATACAGAGAAGTAGACCAA
66 AAAACAAGTGATGCGGTCATCTTCCTAATGAGATACAGAGAAGTAGACCAA
79017 GAGATGAAGC
Statistics
Matches: 461, Mismatches: 66, Indels: 14
0.85 0.12 0.03
Matches are distributed among these distances:
208 2 0.00
209 457 0.99
210 2 0.00
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.22
Consensus pattern (208 bp):
TTCCTGATGAGATACAGAGAAGCGAACCAAATCCATCTTCCTGATGAGATACAGAGAAGCGGATT
AAAACAAGTGATGCGGTCATCTTCCTAATGAGATACAGAGAAGTAGACCAAATCAATGAAACAAA
GCTCAATGTGAGTGAAACTTCGAACCCCAACTTCCTGATGAGATACTGAGAAGCAGTCGAAGCAA
TAAAGTGGTCGTC
Found at i:79400 original size:17 final size:17
Alignment explanation
Indices: 79380--79481 Score: 84
Period size: 17 Copynumber: 6.1 Consensus size: 17
79370 AATGGACCTA
*
79380 ATTTTAAATTTTAATTT
1 ATTTTAAATTTAAATTT
*
79397 A-TTTAAATTTGAATTT
1 ATTTTAAATTTAAATTT
* * *
79413 ACTATAAATTTAAAACTCT
1 ATTTTAAATTT-AAA-TTT
* * **
79432 -TTTTGAGTTTGTATTT
1 ATTTTAAATTTAAATTT
79448 ATTTTAAATTTAAATTT
1 ATTTTAAATTTAAATTT
79465 ATTTTAAA-TTAAATTT
1 ATTTTAAATTTAAATTT
79481 A
1 A
79482 AACTTTAAAA
Statistics
Matches: 66, Mismatches: 15, Indels: 9
0.73 0.17 0.10
Matches are distributed among these distances:
16 26 0.39
17 30 0.45
18 8 0.12
19 2 0.03
ACGTcount: A:0.37, C:0.03, G:0.04, T:0.56
Consensus pattern (17 bp):
ATTTTAAATTTAAATTT
Found at i:79401 original size:16 final size:17
Alignment explanation
Indices: 79382--79423 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
79372 TGGACCTAAT
*
79382 TTTAAATTTTAATTTA-
1 TTTAAATTTGAATTTAC
79398 TTTAAATTTGAATTTAC
1 TTTAAATTTGAATTTAC
*
79415 TATAAATTT
1 TTTAAATTT
79424 AAAACTCTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 15 0.65
17 8 0.35
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (17 bp):
TTTAAATTTGAATTTAC
Found at i:79490 original size:7 final size:6
Alignment explanation
Indices: 79450--79490 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
79440 TTGTATTTAT
*
79450 TTTAAA TTTAAA TTT-AT TTTAAA -TTAAA TTTAAA CTTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA -TTTAAA
79491 AGTCCAAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
5 9 0.30
6 15 0.50
7 6 0.20
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.51
Consensus pattern (6 bp):
TTTAAA
Found at i:81187 original size:30 final size:29
Alignment explanation
Indices: 81121--81265 Score: 152
Period size: 30 Copynumber: 4.9 Consensus size: 29
81111 CCAAAAGGTT
* *
81121 CCTAAACTTTCCAAAAA-TACATGTTGACC
1 CCTAAACTCTCCAAAAATTACAT-TTTACC
81150 CCTAAACTCTCCAAAAATTACATTTTAGCC
1 CCTAAACTCTCCAAAAATTACATTTTA-CC
*
81180 CCCAAACTTCTCC-AAAATTACATTTTTACC
1 CCTAAAC-TCTCCAAAAATTACA-TTTTACC
* * *
81210 CTTGAACTTTCCAAAAATTACATTTTTACC
1 CCTAAACTCTCCAAAAATTACA-TTTTACC
*
81240 CCTAAAGT-TCCAAAAATTACCATTTT
1 CCTAAACTCTCCAAAAATTA-CATTTT
81266 GCTCTCGAAT
Statistics
Matches: 100, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
29 38 0.38
30 52 0.52
31 10 0.10
ACGTcount: A:0.36, C:0.28, G:0.03, T:0.33
Consensus pattern (29 bp):
CCTAAACTCTCCAAAAATTACATTTTACC
Found at i:81264 original size:60 final size:60
Alignment explanation
Indices: 81124--81323 Score: 171
Period size: 59 Copynumber: 3.4 Consensus size: 60
81114 AAAGGTTCCT
* * * * *
81124 AAACTTTCCAAAAA-TACATGTTGACCCCTAAACTCTCCAAAAATTACA-TTTTAGCCCCC
1 AAAC-TTCCAAAAATTACATTTTTACCCTTGAACTTTCCAAAAATTACATTTTTAGCCCCC
* *
81183 AAACTTCTCCAAAATTACATTTTTACCCTTGAACTTTCCAAAAATTACATTTTTA-CCCCT
1 AAACTTC-CAAAAATTACATTTTTACCCTTGAACTTTCCAAAAATTACATTTTTAGCCCCC
* * * * * * *
81243 AAAGTTCCAAAAATTACCA-TTTTGCTCTCGAA-TTTCCAAAAAATCACATTTTTA-ACCTC
1 AAACTTCCAAAAATTA-CATTTTTACCCTTGAACTTTCC-AAAAATTACATTTTTAGCCCCC
*
81302 AAACTTTCC-AAAATTACGTTTT
1 AAAC-TTCCAAAAATTACATTTT
81324 CATTCCGAAC
Statistics
Matches: 116, Mismatches: 18, Indels: 14
0.78 0.12 0.09
Matches are distributed among these distances:
58 9 0.08
59 57 0.49
60 45 0.39
61 5 0.04
ACGTcount: A:0.36, C:0.26, G:0.04, T:0.34
Consensus pattern (60 bp):
AAACTTCCAAAAATTACATTTTTACCCTTGAACTTTCCAAAAATTACATTTTTAGCCCCC
Found at i:81286 original size:89 final size:90
Alignment explanation
Indices: 81124--81323 Score: 232
Period size: 89 Copynumber: 2.3 Consensus size: 90
81114 AAAGGTTCCT
*
81124 AAACTTTCCAAAAA-TACATGTTGACCCCTAAACTCTCCAAAAATTACATTTTAGCCCCCAAACT
1 AAACTTTCCAAAAATTACATTTTGACCCCTAAACTCTCCAAAAATTACATTTTAGCCCCCAAACT
* * *
81188 TCTCCAAAATTACATTTTTACCCTT
66 TCTCCAAAATCACATTTTTAACCTC
* * * * * *
81213 GAACTTTCCAAAAATTACATTTTTACCCCTAAAGT-TCCAAAAATTACCATTTT-GCTCTCGAA-
1 AAACTTTCCAAAAATTACATTTTGACCCCTAAACTCTCCAAAAATTA-CATTTTAGCCCCCAAAC
81275 TT-TCCAAAAAATCACATTTTTAACCTC
65 TTCTCC--AAAATCACATTTTTAACCTC
*
81302 AAACTTTCC-AAAATTACGTTTT
1 AAACTTTCCAAAAATTACATTTT
81324 CATTCCGAAC
Statistics
Matches: 95, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
87 3 0.03
88 14 0.15
89 55 0.58
90 23 0.24
ACGTcount: A:0.36, C:0.26, G:0.04, T:0.34
Consensus pattern (90 bp):
AAACTTTCCAAAAATTACATTTTGACCCCTAAACTCTCCAAAAATTACATTTTAGCCCCCAAACT
TCTCCAAAATCACATTTTTAACCTC
Found at i:81314 original size:29 final size:29
Alignment explanation
Indices: 81124--81323 Score: 144
Period size: 30 Copynumber: 6.8 Consensus size: 29
81114 AAAGGTTCCT
* * *
81124 AAACTTTCCAAAAA-TACATGTTGACCCC
1 AAACTTTCCAAAAATTACATTTTTACCTC
* *
81152 TAAACTCTCCAAAAATTACA-TTTTAGCCCCC
1 -AAACTTTCCAAAAATTACATTTTTA--CCTC
*
81183 AAACTTCTCC-AAAATTACATTTTTACCCTT
1 AAACTT-TCCAAAAATTACATTTTTA-CCTC
* *
81213 GAACTTTCCAAAAATTACATTTTTACCCC
1 AAACTTTCCAAAAATTACATTTTTACCTC
* *
81242 TAAA-GTTCCAAAAATTACCA-TTTTGCTCTC
1 -AAACTTTCCAAAAATTA-CATTTTTAC-CTC
* *
81272 GAA-TTTCCAAAAAATCACATTTTTAACCTC
1 AAACTTTCC-AAAAATTACATTTTT-ACCTC
*
81302 AAACTTTCC-AAAATTACGTTTT
1 AAACTTTCCAAAAATTACATTTT
81324 CATTCCGAAC
Statistics
Matches: 138, Mismatches: 20, Indels: 26
0.75 0.11 0.14
Matches are distributed among these distances:
29 57 0.41
30 63 0.46
31 18 0.13
ACGTcount: A:0.36, C:0.26, G:0.04, T:0.34
Consensus pattern (29 bp):
AAACTTTCCAAAAATTACATTTTTACCTC
Found at i:85027 original size:20 final size:20
Alignment explanation
Indices: 84995--85037 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 20
84985 GGAATTTTGC
84995 ATAGCGGGAAACTTGCTTTA
1 ATAGCGGGAAACTTGCTTTA
85015 ATAGCAGGG-AACTTGCTTTA
1 ATAGC-GGGAAACTTGCTTTA
85035 ATA
1 ATA
85038 CCTAAAGCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 19 0.86
21 3 0.14
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.30
Consensus pattern (20 bp):
ATAGCGGGAAACTTGCTTTA
Found at i:89003 original size:14 final size:16
Alignment explanation
Indices: 88973--89006 Score: 54
Period size: 14 Copynumber: 2.2 Consensus size: 16
88963 TATAAGTGTA
88973 TATTTTTATATTTATT
1 TATTTTTATATTTATT
88989 TATTTTTA-A-TTATT
1 TATTTTTATATTTATT
89003 TATT
1 TATT
89007 ATATCTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 9 0.50
15 1 0.06
16 8 0.44
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (16 bp):
TATTTTTATATTTATT
Found at i:89331 original size:2 final size:2
Alignment explanation
Indices: 89295--89319 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
89285 TTTTGCGTTC
89295 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
89320 ATTTTTTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:92039 original size:47 final size:47
Alignment explanation
Indices: 91974--92064 Score: 146
Period size: 47 Copynumber: 1.9 Consensus size: 47
91964 GGTCTTTAGT
* *
91974 GGCGCTTCACCCACAAACGCCACTAAATAACATGGTCTTTAGCGAGC
1 GGCGCTTCACCCACAAACGCCACTAAAGAACACGGTCTTTAGCGAGC
**
92021 GGCGCTTCACCCACAAACGCCGTTAAAGAACACGGTCTTTAGCG
1 GGCGCTTCACCCACAAACGCCACTAAAGAACACGGTCTTTAGCG
92065 GCGCTTTTTC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 40 1.00
ACGTcount: A:0.29, C:0.32, G:0.21, T:0.19
Consensus pattern (47 bp):
GGCGCTTCACCCACAAACGCCACTAAAGAACACGGTCTTTAGCGAGC
Found at i:92078 original size:90 final size:85
Alignment explanation
Indices: 91881--92083 Score: 226
Period size: 90 Copynumber: 2.3 Consensus size: 85
91871 TAGAACATAA
*** * * * *
91881 TCTTTAGCGGCGCTTTTCCCACAAATAACACTAAAAACATGGTTTTTAGCGGCGCTTTTACTACA
1 TCTTTAGCGGCGCTTTTCCCACAAACGCCACTAAAAACATGGTCTTTAGCGGCGCCTTCACCACA
*
91946 AACACCGCTAAAAAACATGG
66 AACACCGCTAAAAAACACGG
* **
91966 TCTTTAGTGGCGCTTCACCCACAAACGCCACTAAATAACATGGTCTTTAGCGAGCGGCGCTTCAC
1 TCTTTAGCGGCGCTTTTCCCACAAACGCCACTAAA-AACATGGTCTTTAGCG-GC-GC-CTTCA-
* * *
92031 CCACAAACGCCGTTAAAGAACACGG
61 CCACAAACACCGCTAAAAAACACGG
*
92056 TCTTTAGCGGCGCTTTTTCCACAAACGC
1 TCTTTAGCGGCGCTTTTCCCACAAACGC
92084 TGCTAACATT
Statistics
Matches: 95, Mismatches: 18, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
85 29 0.31
86 15 0.16
87 2 0.02
88 2 0.02
89 3 0.03
90 44 0.46
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.25
Consensus pattern (85 bp):
TCTTTAGCGGCGCTTTTCCCACAAACGCCACTAAAAACATGGTCTTTAGCGGCGCCTTCACCACA
AACACCGCTAAAAAACACGG
Found at i:92082 original size:43 final size:42
Alignment explanation
Indices: 91881--92083 Score: 190
Period size: 43 Copynumber: 4.7 Consensus size: 42
91871 TAGAACATAA
***
91881 TCTTTAGCGGCGCTTTTCCCACAAATAACACTAAAAACATGG
1 TCTTTAGCGGCGCTTTTCCCACAAACGCCACTAAAAACATGG
* * * * *
91923 TTTTTAGCGGCGCTTTTACTACAAACACCGCTAAAAAACATGG
1 TCTTTAGCGGCGCTTTTCCCACAAACGCCACT-AAAAACATGG
* **
91966 TCTTTAGTGGCGCTTCACCCACAAACGCCACTAAATAACATGG
1 TCTTTAGCGGCGCTTTTCCCACAAACGCCACTAAA-AACATGG
** ** *
92009 TCTTTAGCGAGCGGCGCTTCACCCACAAACGCCGTTAAAGAACACGG
1 TCTTT----AGCGGCGCTTTTCCCACAAACGCCACTAAA-AACATGG
*
92056 TCTTTAGCGGCGCTTTTTCCACAAACGC
1 TCTTTAGCGGCGCTTTTCCCACAAACGC
92084 TGCTAACATT
Statistics
Matches: 133, Mismatches: 22, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
42 29 0.22
43 66 0.50
47 38 0.29
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.25
Consensus pattern (42 bp):
TCTTTAGCGGCGCTTTTCCCACAAACGCCACTAAAAACATGG
Found at i:92395 original size:5 final size:6
Alignment explanation
Indices: 92380--92404 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
92370 ATTCTATCAA
92380 AAAAAT AAAAAT AAAAAT AAAAAT A
1 AAAAAT AAAAAT AAAAAT AAAAAT A
92405 CATAAACTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:96464 original size:41 final size:41
Alignment explanation
Indices: 96407--96841 Score: 435
Period size: 41 Copynumber: 10.7 Consensus size: 41
96397 GGGGCTTGAT
* * * *
96407 CATAAGCGTCGCTATTGCTCTGACCTTTAGCGGTGCTTGCA
1 CATAAGCGCCGCTATTGCTCTGACCTTTAGCGGCGCTTTCC
** * * *
96448 CATAAGCGTTGTTATTGCTCTGACCTTTAGTGGCGCTTTTC
1 CATAAGCGCCGCTATTGCTCTGACCTTTAGCGGCGCTTTCC
* * * *
96489 CATAAGCGTCGCTATTGATCTGACCTTTAGCGGCAC-TTCT
1 CATAAGCGCCGCTATTGCTCTGACCTTTAGCGGCGCTTTCC
* * * * * *
96529 CATAAGCGTCGCTATTGCTCAGATCTTTAGTGGTGCTTGCC
1 CATAAGCGCCGCTATTGCTCTGACCTTTAGCGGCGCTTTCC
** * * * * *
96570 CATAAGCATCGCTATTGCTATGACCTTTAGTGGTGTTTTCT
1 CATAAGCGCCGCTATTGCTCTGACCTTTAGCGGCGCTTTCC
* * * *
96611 TATAAGCACCGCTATTGCTCTAACCTTTAGCGGCGATTTCC
1 CATAAGCGCCGCTATTGCTCTGACCTTTAGCGGCGCTTTCC
* * * * * *
96652 CATAAGCGCCACTATTGCTTTAACCTTTAGCGTCCCTTGCC
1 CATAAGCGCCGCTATTGCTCTGACCTTTAGCGGCGCTTTCC
* * * *
96693 CATAAGCGCCACTACTGATCTGACCTTTAGCGGCGCTTTCT
1 CATAAGCGCCGCTATTGCTCTGACCTTTAGCGGCGCTTTCC
* *
96734 CATAAGCGCCGCTATTGCTCTGACTTTTAGCGGTGC-TTCC
1 CATAAGCGCCGCTATTGCTCTGACCTTTAGCGGCGCTTTCC
* * * *
96774 CATAAGCACCGCTATTGCTATGACCTTTAGCGACGCTTTCT
1 CATAAGCGCCGCTATTGCTCTGACCTTTAGCGGCGCTTTCC
96815 CATAAGCGCCGCTATTGCTCT-ACCTTT
1 CATAAGCGCCGCTATTGCTCTGACCTTT
96842 TGTGGCGTTT
Statistics
Matches: 325, Mismatches: 67, Indels: 5
0.82 0.17 0.01
Matches are distributed among these distances:
40 72 0.22
41 253 0.78
ACGTcount: A:0.19, C:0.28, G:0.20, T:0.34
Consensus pattern (41 bp):
CATAAGCGCCGCTATTGCTCTGACCTTTAGCGGCGCTTTCC
Found at i:96624 original size:122 final size:121
Alignment explanation
Indices: 96407--96851 Score: 457
Period size: 122 Copynumber: 3.6 Consensus size: 121
96397 GGGGCTTGAT
* * * * *
96407 CATAAGCGTCGCTATTGCTCTGACCTTTAGCGGTGCTTGCACATAAGCGTTGTTATTGCTCTGAC
1 CATAAGCGCCGCTATTGCTCAGACCTTTAG-GGTGCTTGCCCATAAGCGTCGCTATTGCTCTGAC
* * *
96472 CTTTAGTGGCGCTTTTC-CATAAGCGTCGCTATTGATCTGACCTTTAGCGGCACTTCT
65 CTTTAGTGGCG-TTTTCTCATAAGCGCCGCTATTGCTCTGACCTTTAGCGGCACTTCC
* * * *
96529 CATAAGCGTCGCTATTGCTCAGATCTTTAGTGGTGCTTGCCCATAAGCATCGCTATTGCTATGAC
1 CATAAGCGCCGCTATTGCTCAGACCTTTAG-GGTGCTTGCCCATAAGCGTCGCTATTGCTCTGAC
* * * * *
96594 CTTTAGTGGTGTTTTCTTATAAGCACCGCTATTGCTCTAACCTTTAGCGGCGATTTCC
65 CTTTAGTGGCGTTTTCTCATAAGCGCCGCTATTGCTCTGACCTTTAGCGGC-ACTTCC
* * * * * * * *
96652 CATAAGCGCCACTATTGCTTTA-ACCTTTAGCGTCCCTTGCCCATAAGCGCCACTACTGATCTGA
1 CATAAGCGCCGCTATTGC-TCAGACCTTTAGGGT-GCTTGCCCATAAGCGTCGCTATTGCTCTGA
* * * **
96716 CCTTTAGCGGCGCTTTCTCATAAGCGCCGCTATTGCTCTGACTTTTAGCGGTGCTTCC
64 CCTTTAGTGGCGTTTTCTCATAAGCGCCGCTATTGCTCTGACCTTTAGCGGCACTTCC
* ** * * *
96774 CATAAGCACCGCTATTGCT-ATGACCTTTAGCGACGCTTTCTCATAAGCGCCGCTATTGCTCT-A
1 CATAAGCGCCGCTATTGCTCA-GACCTTTAG-GGTGCTTGCCCATAAGCGTCGCTATTGCTCTGA
*
96837 CCTTTTGTGGCGTTT
64 CCTTTAGTGGCGTTT
96852 ATGTAAAAGT
Statistics
Matches: 264, Mismatches: 52, Indels: 15
0.80 0.16 0.05
Matches are distributed among these distances:
120 1 0.00
121 19 0.07
122 148 0.56
123 94 0.36
124 2 0.01
ACGTcount: A:0.18, C:0.27, G:0.20, T:0.34
Consensus pattern (121 bp):
CATAAGCGCCGCTATTGCTCAGACCTTTAGGGTGCTTGCCCATAAGCGTCGCTATTGCTCTGACC
TTTAGTGGCGTTTTCTCATAAGCGCCGCTATTGCTCTGACCTTTAGCGGCACTTCC
Found at i:96778 original size:204 final size:203
Alignment explanation
Indices: 96406--96841 Score: 543
Period size: 204 Copynumber: 2.1 Consensus size: 203
96396 CGGGGCTTGA
** * * **** *
96406 TCATAAGCGTCGCTATTGCTCTGACCTTTAGCGGTGCTTGCACATAAGCGTTGTTATTGCTCTGA
1 TCATAAGCACCGCTATTGCTCT-ACCTTTAGCGGCGATTGCACATAAGCGCCACTATTGCTCTAA
* * ** * * *
96471 CCTTTAGTGGCGCTTTTCCATAAGCGTCGCTATTGATCTGACCTTTAGCGGCACTTCTCATAAGC
65 CCTTTAGCGGCCCTTGCCCATAAGCGCCACTACTGATCTGACCTTTAGCGGCACTTCTCATAAGC
* * * *
96536 GTCGCTATTGCTCAGATCTTTAGTGGTGCTTGCCCATAAGCATCGCTATTGCTATGACCTTTAGT
130 GCCGCTATTGCTCAGATCTTTAGCGGTGCTTGCCCATAAGCACCGCTATTGCTATGACCTTTAGC
** *
96601 GGTGTTTTC
195 GACGCTTTC
* * * *
96610 TTATAAGCACCGCTATTGCTCTAACCTTTAGCGGCGATTTCCCATAAGCGCCACTATTGCTTTAA
1 TCATAAGCACCGCTATTGCTCT-ACCTTTAGCGGCGATTGCACATAAGCGCCACTATTGCTCTAA
* *
96675 CCTTTAGCGTCCCTTGCCCATAAGCGCCACTACTGATCTGACCTTTAGCGGCGCTTTCTCATAAG
65 CCTTTAGCGGCCCTTGCCCATAAGCGCCACTACTGATCTGACCTTTAGCGGCAC-TTCTCATAAG
*
96740 CGCCGCTATTGCTCTGA-CTTTTAGCGGTGCTT-CCCATAAGCACCGCTATTGCTATGACCTTTA
129 CGCCGCTATTGCTCAGATC-TTTAGCGGTGCTTGCCCATAAGCACCGCTATTGCTATGACCTTTA
96803 GCGACGCTTTC
193 GCGACGCTTTC
*
96814 TCATAAGCGCCGCTATTGCTCTACCTTT
1 TCATAAGCACCGCTATTGCTCTACCTTT
96842 TGTGGCGTTT
Statistics
Matches: 197, Mismatches: 33, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
203 6 0.03
204 154 0.78
205 37 0.19
ACGTcount: A:0.19, C:0.28, G:0.20, T:0.34
Consensus pattern (203 bp):
TCATAAGCACCGCTATTGCTCTACCTTTAGCGGCGATTGCACATAAGCGCCACTATTGCTCTAAC
CTTTAGCGGCCCTTGCCCATAAGCGCCACTACTGATCTGACCTTTAGCGGCACTTCTCATAAGCG
CCGCTATTGCTCAGATCTTTAGCGGTGCTTGCCCATAAGCACCGCTATTGCTATGACCTTTAGCG
ACGCTTTC
Found at i:104879 original size:10 final size:10
Alignment explanation
Indices: 104864--104898 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
104854 TCAACACCTT
104864 CACCTTGCAC
1 CACCTTGCAC
104874 CACCTTGCAC
1 CACCTTGCAC
*
104884 CACCATG-AC
1 CACCTTGCAC
104893 CACCTT
1 CACCTT
104899 TTTGCACCTC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 7 0.30
10 16 0.70
ACGTcount: A:0.23, C:0.49, G:0.09, T:0.20
Consensus pattern (10 bp):
CACCTTGCAC
Found at i:106089 original size:37 final size:37
Alignment explanation
Indices: 105960--106076 Score: 216
Period size: 37 Copynumber: 3.2 Consensus size: 37
105950 TGAGATTTAA
*
105960 TTGCATGTTAAACATGCCCTAAATGATATTATTCGAT
1 TTGCATGTTAAACATGCCCTACATGATATTATTCGAT
105997 TTGCATGTTAAACATGCCCTACATGATATTATTCGAT
1 TTGCATGTTAAACATGCCCTACATGATATTATTCGAT
*
106034 TTGCATGTTAAACATGCCCTACATGATATTATTCAAT
1 TTGCATGTTAAACATGCCCTACATGATATTATTCGAT
106071 TTGCAT
1 TTGCAT
106077 ATTTGACATG
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
37 78 1.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (37 bp):
TTGCATGTTAAACATGCCCTACATGATATTATTCGAT
Found at i:107234 original size:10 final size:10
Alignment explanation
Indices: 107217--107264 Score: 69
Period size: 10 Copynumber: 4.8 Consensus size: 10
107207 TGCCATATTT
107217 TAATCACATA
1 TAATCACATA
*
107227 TAACCACATA
1 TAATCACATA
*
107237 TAGTCACATA
1 TAATCACATA
*
107247 TAATCACATT
1 TAATCACATA
107257 TAATCACA
1 TAATCACA
107265 CTTCATGATA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
10 33 1.00
ACGTcount: A:0.46, C:0.23, G:0.02, T:0.29
Consensus pattern (10 bp):
TAATCACATA
Found at i:107279 original size:20 final size:20
Alignment explanation
Indices: 107256--107294 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
107246 ATAATCACAT
*
107256 TTAATCACACTTCATGATAA
1 TTAATCACACTTAATGATAA
*
107276 TTAATCACATTTAATGATA
1 TTAATCACACTTAATGATA
107295 GTTTGACTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.41, C:0.15, G:0.05, T:0.38
Consensus pattern (20 bp):
TTAATCACACTTAATGATAA
Found at i:107335 original size:111 final size:111
Alignment explanation
Indices: 107200--107424 Score: 441
Period size: 111 Copynumber: 2.0 Consensus size: 111
107190 TATTTAAGCA
107200 TATATTCTGCCATATTTTAATCACATATAACCACATATAGTCACATATAATCACATTTAATCACA
1 TATATTCTGCCATATTTTAATCACATATAACCACATATAGTCACATATAATCACATTTAATCACA
107265 CTTCATGATAATTAATCACATTTAATGATAGTTTGACTCTTGAGAT
66 CTTCATGATAATTAATCACATTTAATGATAGTTTGACTCTTGAGAT
*
107311 TATATTCTGTCATATTTTAATCACATATAACCACATATAGTCACATATAATCACATTTAATCACA
1 TATATTCTGCCATATTTTAATCACATATAACCACATATAGTCACATATAATCACATTTAATCACA
107376 CTTCATGATAATTAATCACATTTAATGATAGTTTGACTCTTGAGAT
66 CTTCATGATAATTAATCACATTTAATGATAGTTTGACTCTTGAGAT
107422 TAT
1 TAT
107425 GTAACATAAA
Statistics
Matches: 113, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
111 113 1.00
ACGTcount: A:0.37, C:0.17, G:0.07, T:0.39
Consensus pattern (111 bp):
TATATTCTGCCATATTTTAATCACATATAACCACATATAGTCACATATAATCACATTTAATCACA
CTTCATGATAATTAATCACATTTAATGATAGTTTGACTCTTGAGAT
Found at i:107345 original size:10 final size:10
Alignment explanation
Indices: 107328--107375 Score: 69
Period size: 10 Copynumber: 4.8 Consensus size: 10
107318 TGTCATATTT
107328 TAATCACATA
1 TAATCACATA
*
107338 TAACCACATA
1 TAATCACATA
*
107348 TAGTCACATA
1 TAATCACATA
*
107358 TAATCACATT
1 TAATCACATA
107368 TAATCACA
1 TAATCACA
107376 CTTCATGATA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
10 33 1.00
ACGTcount: A:0.46, C:0.23, G:0.02, T:0.29
Consensus pattern (10 bp):
TAATCACATA
Found at i:107390 original size:20 final size:20
Alignment explanation
Indices: 107367--107405 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
107357 ATAATCACAT
*
107367 TTAATCACACTTCATGATAA
1 TTAATCACACTTAATGATAA
*
107387 TTAATCACATTTAATGATA
1 TTAATCACACTTAATGATA
107406 GTTTGACTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.41, C:0.15, G:0.05, T:0.38
Consensus pattern (20 bp):
TTAATCACACTTAATGATAA
Found at i:107932 original size:7 final size:8
Alignment explanation
Indices: 107914--107943 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
107904 CTCATATATG
107914 TTCACAAT
1 TTCACAAT
107922 TTCAC-AT
1 TTCACAAT
107929 TTCACAAT
1 TTCACAAT
107937 TTCACAA
1 TTCACAA
107944 GCATACATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.33
8 14 0.67
ACGTcount: A:0.37, C:0.27, G:0.00, T:0.37
Consensus pattern (8 bp):
TTCACAAT
Found at i:107934 original size:15 final size:15
Alignment explanation
Indices: 107914--107942 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
107904 CTCATATATG
107914 TTCACAATTTCACAT
1 TTCACAATTTCACAT
107929 TTCACAATTTCACA
1 TTCACAATTTCACA
107943 AGCATACATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.28, G:0.00, T:0.38
Consensus pattern (15 bp):
TTCACAATTTCACAT
Found at i:110823 original size:17 final size:17
Alignment explanation
Indices: 110801--110833 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
110791 TTTGAAAGGA
110801 TAAAATA-AAAGATAAAC
1 TAAAATAGAAA-ATAAAC
110818 TAAAATAGAAAATAAA
1 TAAAATAGAAAATAAA
110834 GGAAAAGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.73, C:0.03, G:0.06, T:0.18
Consensus pattern (17 bp):
TAAAATAGAAAATAAAC
Found at i:116361 original size:54 final size:54
Alignment explanation
Indices: 116279--116387 Score: 218
Period size: 54 Copynumber: 2.0 Consensus size: 54
116269 TACCTAAACA
116279 CCTTAGTATGCACAAATATCAATTTCGTCACATAATTTCAAAATTATCATCTAT
1 CCTTAGTATGCACAAATATCAATTTCGTCACATAATTTCAAAATTATCATCTAT
116333 CCTTAGTATGCACAAATATCAATTTCGTCACATAATTTCAAAATTATCATCTAT
1 CCTTAGTATGCACAAATATCAATTTCGTCACATAATTTCAAAATTATCATCTAT
116387 C
1 C
116388 ATATATACTA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.37, C:0.21, G:0.06, T:0.37
Consensus pattern (54 bp):
CCTTAGTATGCACAAATATCAATTTCGTCACATAATTTCAAAATTATCATCTAT
Found at i:135461 original size:17 final size:17
Alignment explanation
Indices: 135439--135471 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
135429 TTTGGAAGCA
135439 TAAAATA-AAAGATAAAC
1 TAAAATAGAAA-ATAAAC
135456 TAAAATAGAAAATAAA
1 TAAAATAGAAAATAAA
135472 GGAAAAGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.73, C:0.03, G:0.06, T:0.18
Consensus pattern (17 bp):
TAAAATAGAAAATAAAC
Found at i:136091 original size:19 final size:19
Alignment explanation
Indices: 136064--136101 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
136054 AGCAATGGTG
*
136064 TGTACAACCCTAGTGCTAA
1 TGTAAAACCCTAGTGCTAA
*
136083 TGTAAAACCTTAGTGCTAA
1 TGTAAAACCCTAGTGCTAA
136102 AAGTCCTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (19 bp):
TGTAAAACCCTAGTGCTAA
Found at i:136703 original size:24 final size:24
Alignment explanation
Indices: 136671--136727 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
136661 GAGGAAGAAT
* *
136671 TGGTGGCTTCGTCCATAACCTACA
1 TGGTAGCTTCGTCCACAACCTACA
* *
136695 TGGTAGCTTTGTCCACAACCTATA
1 TGGTAGCTTCGTCCACAACCTACA
*
136719 TGGCAGCTT
1 TGGTAGCTT
136728 GATTTCAAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (24 bp):
TGGTAGCTTCGTCCACAACCTACA
Found at i:149406 original size:43 final size:43
Alignment explanation
Indices: 149359--149443 Score: 134
Period size: 43 Copynumber: 2.0 Consensus size: 43
149349 AGACACTTGA
* *
149359 TGTATAAATGGAAGACTCATGTCCCGAATTGAGCATGAGAATT
1 TGTATAAATGGAAGACTCATGACCCGAAATGAGCATGAGAATT
* *
149402 TGTATGAATGGAAGACTCATGACTCGAAATGAGCATGAGAAT
1 TGTATAAATGGAAGACTCATGACCCGAAATGAGCATGAGAAT
149444 ATATTAAAGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.36, C:0.13, G:0.25, T:0.26
Consensus pattern (43 bp):
TGTATAAATGGAAGACTCATGACCCGAAATGAGCATGAGAATT
Found at i:149561 original size:84 final size:83
Alignment explanation
Indices: 149411--149643 Score: 308
Period size: 84 Copynumber: 2.8 Consensus size: 83
149401 TTGTATGAAT
* * * * ** * *
149411 GGAAGACTCATGACTCGAA-ATGAGCATGAGAATAT-ATTAAAGGAAGATTTGTGTCTGGGGAAG
1 GGAAGACTCATGTCTC-AAGATGAGAATGAGATTATGTTTAAAGGAAGA-TCATGTCTCGGGATG
*
149474 AGAATGATATCATGTTTAAA
64 AGAATGAGATCATGTTTAAA
*
149494 GGAAGACTTATGTCTCAAGATGAGAATGAGATTATGTTTAAAGGAAGACTCATGTCTCGGGATGA
1 GGAAGACTCATGTCTCAAGATGAGAATGAGATTATGTTTAAAGGAAGA-TCATGTCTCGGGATGA
*
149559 GAATGAGATTATGTTTAAA
65 GAATGAGATCATGTTTAAA
*
149578 GGAAGACTCATGTCTCAAGATGAGAATGAGATTATGTTTAAAGGAAGATCCATGTCTCGGAATGA
1 GGAAGACTCATGTCTCAAGATGAGAATGAGATTATGTTTAAAGGAAGAT-CATGTCTCGGGATGA
149643 G
65 G
149644 CGTAAGATGT
Statistics
Matches: 133, Mismatches: 14, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
82 2 0.02
83 29 0.22
84 102 0.77
ACGTcount: A:0.36, C:0.09, G:0.27, T:0.27
Consensus pattern (83 bp):
GGAAGACTCATGTCTCAAGATGAGAATGAGATTATGTTTAAAGGAAGATCATGTCTCGGGATGAG
AATGAGATCATGTTTAAA
Found at i:149643 original size:42 final size:42
Alignment explanation
Indices: 149358--149643 Score: 278
Period size: 42 Copynumber: 6.8 Consensus size: 42
149348 GAGACACTTG
* * * *
149358 ATGTATAAATGGAAGACTCATGTCCCGAATTGAGCATGAGAATT
1 ATGTTTAAA-GGAAGACTCATGTCTCGAAATGAGAATGAG-ATT
* * * * *
149402 -TGTATGAATGGAAGACTCATGACTCGAAATGAGCATGAGAAT
1 ATGT-TTAAAGGAAGACTCATGTCTCGAAATGAGAATGAGATT
* * ** * * * *
149444 AT-ATTAAAGGAAGATTTGTGTCTGGGGAA-GAGAATGATATC
1 ATGTTTAAAGGAAGACTCATGTCT-CGAAATGAGAATGAGATT
*
149485 ATGTTTAAAGGAAGACTTATGTCTC-AAGATGAGAATGAGATT
1 ATGTTTAAAGGAAGACTCATGTCTCGAA-ATGAGAATGAGATT
**
149527 ATGTTTAAAGGAAGACTCATGTCTCGGGATGAGAATGAGATT
1 ATGTTTAAAGGAAGACTCATGTCTCGAAATGAGAATGAGATT
149569 ATGTTTAAAGGAAGACTCATGTCTC-AAGATGAGAATGAGATT
1 ATGTTTAAAGGAAGACTCATGTCTCGAA-ATGAGAATGAGATT
*
149611 ATGTTTAAAGGAAGA-TCCATGTCTCGGAATGAG
1 ATGTTTAAAGGAAGACT-CATGTCTCGAAATGAG
149644 CGTAAGATGT
Statistics
Matches: 199, Mismatches: 33, Indels: 22
0.78 0.13 0.09
Matches are distributed among these distances:
40 1 0.01
41 26 0.13
42 138 0.69
43 32 0.16
44 2 0.01
ACGTcount: A:0.36, C:0.10, G:0.26, T:0.28
Consensus pattern (42 bp):
ATGTTTAAAGGAAGACTCATGTCTCGAAATGAGAATGAGATT
Found at i:150249 original size:21 final size:21
Alignment explanation
Indices: 150224--150270 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
150214 ACCTAGGTAT
150224 TATCGATAGTTGCATATTAAG
1 TATCGATAGTTGCATATTAAG
150245 TATCGATAGTTGCATATTAAG
1 TATCGATAGTTGCATATTAAG
150266 TATCG
1 TATCG
150271 GTTGTTCTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (21 bp):
TATCGATAGTTGCATATTAAG
Found at i:156887 original size:23 final size:23
Alignment explanation
Indices: 156853--156899 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
156843 CACAAGTGTC
*
156853 AGTAGAAGTCTGGACTACTTCTA
1 AGTAGAAATCTGGACTACTTCTA
*
156876 AGTAGAAATCTGGACTATTTCTA
1 AGTAGAAATCTGGACTACTTCTA
156899 A
1 A
156900 ATTTCTTACT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32
Consensus pattern (23 bp):
AGTAGAAATCTGGACTACTTCTA
Found at i:163747 original size:57 final size:57
Alignment explanation
Indices: 163592--163749 Score: 217
Period size: 57 Copynumber: 2.8 Consensus size: 57
163582 GTAGCTTTAT
* * * *
163592 GCTCTAACCGAGACGTAAGAAAATCCATAGCTCTACTCGAGATGTACATGGCATTAT
1 GCTCTAATCGAGACGTAAGAAAATCCATAGCTCTACCCGAGCTGTACATGGCATTAC
* * * *
163649 GCTCTGATCAAAACGTAAGCAAATCCATAGCTCTACCCGAGCTGTACATGGCATTAC
1 GCTCTAATCGAGACGTAAGAAAATCCATAGCTCTACCCGAGCTGTACATGGCATTAC
* * *
163706 GCTCTAATCGAGACATAAGTAAATCTATAGCTCTACCCGAGCTG
1 GCTCTAATCGAGACGTAAGAAAATCCATAGCTCTACCCGAGCTG
163750 CCCTTTAATG
Statistics
Matches: 87, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
57 87 1.00
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.24
Consensus pattern (57 bp):
GCTCTAATCGAGACGTAAGAAAATCCATAGCTCTACCCGAGCTGTACATGGCATTAC
Found at i:166750 original size:37 final size:37
Alignment explanation
Indices: 166698--166827 Score: 118
Period size: 37 Copynumber: 3.5 Consensus size: 37
166688 TGAGATTTAA
* * * * *
166698 TTTCATTTTAGACATGCCCTATATAATATTATTCAAT
1 TTTCATGTTAAACATGCCCTACATGATATTATTCGAT
* *
166735 TTTCATGTTAAACATGCACTACATGTTATTATTCGAT
1 TTTCATGTTAAACATGCCCTACATGATATTATTCGAT
* ** *
166772 TTGTC-TATTAAACATATCCTACATGATATTATCCGAT
1 TT-TCATGTTAAACATGCCCTACATGATATTATTCGAT
* **
166809 TTGCATGTTCGACATGCCC
1 TTTCATGTTAAACATGCCC
166828 ATTGTGACAA
Statistics
Matches: 72, Mismatches: 19, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
36 1 0.01
37 69 0.96
38 2 0.03
ACGTcount: A:0.29, C:0.19, G:0.10, T:0.42
Consensus pattern (37 bp):
TTTCATGTTAAACATGCCCTACATGATATTATTCGAT
Found at i:171803 original size:52 final size:52
Alignment explanation
Indices: 171733--171976 Score: 313
Period size: 52 Copynumber: 4.8 Consensus size: 52
171723 TAAATCCTTA
* * * *
171733 AAAGGATCCGTATGCTCACAATGACACATAGTCATCAGACCTCATAATCTGT
1 AAAGGATTCATATACTCACAATGACACATAGTCATCGGACCTCATAATCTGT
* * * **
171785 AAATGATTCATATACTCACGATGATACATAGTCATCGGACCTCATAATCCAT
1 AAAGGATTCATATACTCACAATGACACATAGTCATCGGACCTCATAATCTGT
*
171837 AAAGGATTGATATACTCACAATGACACATAGTCATCGGACCTCATAATCTGT
1 AAAGGATTCATATACTCACAATGACACATAGTCATCGGACCTCATAATCTGT
171889 AAAGGATTC--ATA-T---AATGACACATAGTCATCGGACCTCATAATCCT-T
1 AAAGGATTCATATACTCACAATGACACATAGTCATCGGACCTCATAAT-CTGT
* **
171935 AAAGGATACATATACTCATGATGACACATAGTCATCGGACCT
1 AAAGGATTCATATACTCACAATGACACATAGTCATCGGACCT
171977 TTTTGCATTT
Statistics
Matches: 167, Mismatches: 18, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
46 38 0.23
47 2 0.01
48 3 0.02
49 2 0.01
50 3 0.02
52 119 0.71
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (52 bp):
AAAGGATTCATATACTCACAATGACACATAGTCATCGGACCTCATAATCTGT
Found at i:171962 original size:98 final size:102
Alignment explanation
Indices: 171704--171976 Score: 358
Period size: 104 Copynumber: 2.7 Consensus size: 102
171694 ACTCATGATA
* * * * * *
171704 ACACAAAGTCATCGAACCTTA-AATCCTTAAAAGGATCCGTATGCTCACAATGACACATAGTCAT
1 ACACATAGTCATCGGACCTCATAATCCTT-AAAGGATACATATACTCACAATGACACATAGTCAT
* *
171768 CAGACCTCATAATCTGTAAATGATTCATATACTCACGATG
65 CGGACCTCATAATCTGTAAAGGATTCA-ATACTCAC-ATG
* * **
171808 ATACATAGTCATCGGACCTCATAATCCATAAAGGATTGATATACTCACAATGACACATAGTCATC
1 ACACATAGTCATCGGACCTCATAATCCTTAAAGGATACATATACTCACAATGACACATAGTCATC
171873 GGACCTCATAATCTGTAAAGGATTC-ATA-T-A-ATG
66 GGACCTCATAATCTGTAAAGGATTCAATACTCACATG
**
171906 ACACATAGTCATCGGACCTCATAATCCTTAAAGGATACATATACTCATGATGACACATAGTCATC
1 ACACATAGTCATCGGACCTCATAATCCTTAAAGGATACATATACTCACAATGACACATAGTCATC
171971 GGACCT
66 GGACCT
171977 TTTTGCATTT
Statistics
Matches: 151, Mismatches: 17, Indels: 8
0.86 0.10 0.05
Matches are distributed among these distances:
98 68 0.45
100 1 0.01
101 1 0.01
102 3 0.02
104 72 0.48
105 6 0.04
ACGTcount: A:0.37, C:0.23, G:0.14, T:0.26
Consensus pattern (102 bp):
ACACATAGTCATCGGACCTCATAATCCTTAAAGGATACATATACTCACAATGACACATAGTCATC
GGACCTCATAATCTGTAAAGGATTCAATACTCACATG
Found at i:178212 original size:29 final size:29
Alignment explanation
Indices: 178180--178309 Score: 179
Period size: 29 Copynumber: 4.5 Consensus size: 29
178170 TATGCCACAA
* *
178180 ATACAGTTACAGATACAGTCATGTCAGAG
1 ATACAGTTATAGATACAGTCATGTCATAG
** * *
178209 ATACAACTATTGATACAGTCATGTCACAG
1 ATACAGTTATAGATACAGTCATGTCATAG
* *
178238 ATACAGTTTTAGATACAATCATGTCATAG
1 ATACAGTTATAGATACAGTCATGTCATAG
178267 ATACAGTTATAGATACAGTCATGTCATAG
1 ATACAGTTATAGATACAGTCATGTCATAG
*
178296 ATACAGTTACAGAT
1 ATACAGTTATAGAT
178310 GCAAACATGA
Statistics
Matches: 87, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 87 1.00
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.29
Consensus pattern (29 bp):
ATACAGTTATAGATACAGTCATGTCATAG
Found at i:178242 original size:17 final size:17
Alignment explanation
Indices: 178220--178302 Score: 78
Period size: 17 Copynumber: 5.5 Consensus size: 17
178210 TACAACTATT
*
178220 GATACAGTCATGTCACA
1 GATACAGTCATGTCATA
178237 GATACAGT--T-T--TA
1 GATACAGTCATGTCATA
*
178249 GATACAATCATGTCATA
1 GATACAGTCATGTCATA
178266 GATACAG---T-T-ATA
1 GATACAGTCATGTCATA
178278 GATACAGTCATGTCATA
1 GATACAGTCATGTCATA
178295 GATACAGT
1 GATACAGT
178303 TACAGATGCA
Statistics
Matches: 53, Mismatches: 3, Indels: 20
0.70 0.04 0.26
Matches are distributed among these distances:
12 18 0.34
13 1 0.02
14 3 0.06
15 3 0.06
16 1 0.02
17 27 0.51
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.30
Consensus pattern (17 bp):
GATACAGTCATGTCATA
Found at i:178342 original size:58 final size:58
Alignment explanation
Indices: 178151--178318 Score: 167
Period size: 58 Copynumber: 2.9 Consensus size: 58
178141 AAAAATACAA
* * * * ** *
178151 ATACAGTTAC-GAATATAGTTATGCCACAAATACAGTTACAGATACAGTCATGTCAGAG
1 ATACAGTTACAG-ATACAGTCATGTCACAGATACAGTTACAGATACAAACATGTCATAG
** ** ** *
178209 ATACAACTATTGATACAGTCATGTCACAGATACAGTTTTAGATACAATCATGTCATAG
1 ATACAGTTACAGATACAGTCATGTCACAGATACAGTTACAGATACAAACATGTCATAG
* * *
178267 ATACAGTTATAGATACAGTCATGTCATAGATACAGTTACAGATGCAAACATG
1 ATACAGTTACAGATACAGTCATGTCACAGATACAGTTACAGATACAAACATG
178319 ATACAAATAT
Statistics
Matches: 90, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
58 89 0.99
59 1 0.01
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.28
Consensus pattern (58 bp):
ATACAGTTACAGATACAGTCATGTCACAGATACAGTTACAGATACAAACATGTCATAG
Found at i:179519 original size:42 final size:42
Alignment explanation
Indices: 179459--179609 Score: 212
Period size: 42 Copynumber: 3.6 Consensus size: 42
179449 GAATCACTTG
* *
179459 ATGTATAAATGGAAGACTCATGTCTTGGGATGAGCGTGAGATT
1 ATGTATAAA-GGAAGACTCATGTCTTGGAATGAGCATGAGATT
* * *
179502 ATGTATAAAGGAAGACTCATGACTCGGAATGAGCATGATATT
1 ATGTATAAAGGAAGACTCATGTCTTGGAATGAGCATGAGATT
* *
179544 ATGTTTAAAGGAAGACTCATGTCTTGGAAAGAGCATGAGATT
1 ATGTATAAAGGAAGACTCATGTCTTGGAATGAGCATGAGATT
* *
179586 ATGTTTAAAGGAAGACTTATGTCT
1 ATGTATAAAGGAAGACTCATGTCT
179610 CGGTAGAGAA
Statistics
Matches: 97, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
42 88 0.91
43 9 0.09
ACGTcount: A:0.34, C:0.10, G:0.26, T:0.30
Consensus pattern (42 bp):
ATGTATAAAGGAAGACTCATGTCTTGGAATGAGCATGAGATT
Found at i:179607 original size:18 final size:18
Alignment explanation
Indices: 179542--179607 Score: 53
Period size: 18 Copynumber: 3.3 Consensus size: 18
179532 GAGCATGATA
179542 TTATGTTTAAAGGAAGAC
1 TTATGTTTAAAGGAAGAC
*
179560 TCATGTCTTGGAAAGAGCATGAGA-
1 TTATGT-TT--AAAG-G-A--AGAC
179584 TTATGTTTAAAGGAAGAC
1 TTATGTTTAAAGGAAGAC
179602 TTATGT
1 TTATGT
179608 CTCGGTAGAG
Statistics
Matches: 38, Mismatches: 2, Indels: 16
0.68 0.04 0.29
Matches are distributed among these distances:
17 3 0.08
18 11 0.29
19 3 0.08
20 1 0.03
21 8 0.21
22 1 0.03
23 3 0.08
24 5 0.13
25 3 0.08
ACGTcount: A:0.35, C:0.08, G:0.24, T:0.33
Consensus pattern (18 bp):
TTATGTTTAAAGGAAGAC
Found at i:180356 original size:21 final size:21
Alignment explanation
Indices: 180324--180377 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
180314 GGAATTTTTA
* *
180324 GTATCAGTAGAAGCAAGTCTT
1 GTATCGGTAGAAGCAACTCTT
* * *
180345 GTTTTGGTAGAAGTAACTCTT
1 GTATCGGTAGAAGCAACTCTT
180366 GTATCGGTAGAA
1 GTATCGGTAGAA
180378 CCACCTCAAC
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.26, T:0.33
Consensus pattern (21 bp):
GTATCGGTAGAAGCAACTCTT
Found at i:181322 original size:53 final size:53
Alignment explanation
Indices: 181244--181552 Score: 192
Period size: 53 Copynumber: 5.8 Consensus size: 53
181234 GTACCACACC
* * *
181244 CATGTGTTAGCCCATGTTCCTCAAAACAGTATACACACACCCTGACACACGTT
1 CATGTGTCAGCCCATGTGCCTCAAAACAGTATACACACACCCTGACACACGCT
* * * * *
181297 TATGTGTCAGCCCATGTGCCCCAAAATAGTTTACACACACGCTGACACACGCT
1 CATGTGTCAGCCCATGTGCCTCAAAACAGTATACACACACCCTGACACACGCT
* * * * * * * * *
181350 CGTGTGCCTA-CTCATGTGCCTTAAAACAATATACACACACCCTAACCCATGCC
1 CATGTGTC-AGCCCATGTGCCTCAAAACAGTATACACACACCCTGACACACGCT
* ** * * * *
181403 CATGTG-CTATCCTGTGTGCCTCCAAACAATATACACACACACCCTGACATACGCC
1 CATGTGTC-AGCCCATGTGCCTCAAAACAGTAT--ACACACACCCTGACACACGCT
* * * * * * * *
181458 CGTATG-CTAGCCCGTATACCTCCAAGCAATATAGACACACACCCTGACACACGCT
1 CATGTGTC-AGCCCATGTGCCTCAAAACAGTAT--ACACACACCCTGACACACGCT
** * * * *
181513 TGTGTGTCAGCACGTGTGCCTCCAAACAGTATAGACACAC
1 CATGTGTCAGCCCATGTGCCTCAAAACAGTATACACACAC
181553 AATGTATCAA
Statistics
Matches: 201, Mismatches: 50, Indels: 10
0.77 0.19 0.04
Matches are distributed among these distances:
52 3 0.01
53 111 0.55
54 1 0.00
55 85 0.42
56 1 0.00
ACGTcount: A:0.29, C:0.34, G:0.15, T:0.22
Consensus pattern (53 bp):
CATGTGTCAGCCCATGTGCCTCAAAACAGTATACACACACCCTGACACACGCT
Found at i:181535 original size:55 final size:55
Alignment explanation
Indices: 181329--181553 Score: 181
Period size: 55 Copynumber: 4.1 Consensus size: 55
181319 AAAATAGTTT
* * * * * **
181329 ACACACACGCTGACACACGCTCGTGTGCCTA-CTCATGTGCCTTAAAACAATAT--
1 ACACACACCCTGACACACGCCCGTATG-CTAGCACGTGTGCCTCCAAACAATATAG
* * * * * * *
181382 ACACACACCCTAACCCATGCCCATGTGCTATC-CTGTGTGCCTCCAAACAATATAC
1 ACACACACCCTGACACACGCCCGTATGCTAGCAC-GTGTGCCTCCAAACAATATAG
* * * * *
181437 ACACACACCCTGACATACGCCCGTATGCTAGCCCGTATACCTCCAAGCAATATAG
1 ACACACACCCTGACACACGCCCGTATGCTAGCACGTGTGCCTCCAAACAATATAG
** * *
181492 ACACACACCCTGACACACGCTTGTGTG-TCAGCACGTGTGCCTCCAAACAGTATAG
1 ACACACACCCTGACACACGCCCGTATGCT-AGCACGTGTGCCTCCAAACAATATAG
181547 ACACACA
1 ACACACA
181554 ATGTATCAAC
Statistics
Matches: 137, Mismatches: 29, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
52 4 0.03
53 38 0.28
54 1 0.01
55 93 0.68
56 1 0.01
ACGTcount: A:0.30, C:0.35, G:0.15, T:0.20
Consensus pattern (55 bp):
ACACACACCCTGACACACGCCCGTATGCTAGCACGTGTGCCTCCAAACAATATAG
Found at i:183358 original size:29 final size:29
Alignment explanation
Indices: 183326--183508 Score: 231
Period size: 29 Copynumber: 6.3 Consensus size: 29
183316 TAGAAATAAT
** *
183326 ACAGATACAGTTATGGATACAATCATGCC
1 ACAGATACAGTTACAGATACAATCATGTC
* * *
183355 ACAGATATAGTTACAGACACAATCATGTT
1 ACAGATACAGTTACAGATACAATCATGTC
* * * *
183384 AGAGATACAATTATAGATACAGTCATGTC
1 ACAGATACAGTTACAGATACAATCATGTC
* * *
183413 ACAGATACAATTACAGATATAGTCATGTC
1 ACAGATACAGTTACAGATACAATCATGTC
*
183442 ACAGATACAGTTACAGATACAATCATGTA
1 ACAGATACAGTTACAGATACAATCATGTC
*
183471 ACAGATATAGTTACAGATACAATCATGTC
1 ACAGATACAGTTACAGATACAATCATGTC
183500 ACAGATACA
1 ACAGATACA
183509 ATTAGGATGG
Statistics
Matches: 131, Mismatches: 23, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 131 1.00
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.26
Consensus pattern (29 bp):
ACAGATACAGTTACAGATACAATCATGTC
Found at i:183418 original size:58 final size:58
Alignment explanation
Indices: 183326--183544 Score: 248
Period size: 58 Copynumber: 3.8 Consensus size: 58
183316 TAGAAATAAT
* * * * *
183326 ACAGATACAGTTATGGATACAATCATGCCACAGATATAGTTACAGACACAATCATGTT
1 ACAGATACAATTATAGATACAATCATGTCACAGATATAGTTACAGATACAATCATGTC
* * * * * *
183384 AGAGATACAATTATAGATACAGTCATGTCACAGATACAATTACAGATATAGTCATGTC
1 ACAGATACAATTATAGATACAATCATGTCACAGATATAGTTACAGATACAATCATGTC
* * *
183442 ACAGATACAGTTACAGATACAATCATGTAACAGATATAGTTACAGATACAATCATGTC
1 ACAGATACAATTATAGATACAATCATGTCACAGATATAGTTACAGATACAATCATGTC
*
183500 ACAGATACAATTA-GGATGGA-AAT-ATGAT-ACAGATATAGTTACAGA
1 ACAGATACAATTATAGAT--ACAATCATG-TCACAGATATAGTTACAGA
183545 AGTAGACATA
Statistics
Matches: 136, Mismatches: 22, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
57 23 0.17
58 112 0.82
59 1 0.01
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.26
Consensus pattern (58 bp):
ACAGATACAATTATAGATACAATCATGTCACAGATATAGTTACAGATACAATCATGTC
Found at i:183420 original size:17 final size:17
Alignment explanation
Indices: 183398--183508 Score: 72
Period size: 17 Copynumber: 7.4 Consensus size: 17
183388 ATACAATTAT
183398 AGATACAGTCATGTCAC
1 AGATACAGTCATGTCAC
183415 AGATACA---AT-T-AC
1 AGATACAGTCATGTCAC
*
183427 AGATATAGTCATGTCAC
1 AGATACAGTCATGTCAC
183444 AGATACAG---T-T-AC
1 AGATACAGTCATGTCAC
* *
183456 AGATACAATCATGTAAC
1 AGATACAGTCATGTCAC
*
183473 AGAT--A-T-A-GTTAC
1 AGATACAGTCATGTCAC
*
183485 AGATACAATCATGTCAC
1 AGATACAGTCATGTCAC
183502 AGATACA
1 AGATACA
183509 ATTAGGATGG
Statistics
Matches: 74, Mismatches: 5, Indels: 30
0.68 0.05 0.28
Matches are distributed among these distances:
12 25 0.34
13 3 0.04
14 5 0.07
15 5 0.07
16 3 0.04
17 33 0.45
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.25
Consensus pattern (17 bp):
AGATACAGTCATGTCAC
Found at i:183675 original size:40 final size:40
Alignment explanation
Indices: 183618--183719 Score: 134
Period size: 40 Copynumber: 2.5 Consensus size: 40
183608 GTATGACACG
* *
183618 TTGCAGTGTTTATAGTGTCACTACC-AGTTCAATGGTAACC
1 TTGCAGTGTTTATAGTGTCACTACCGA-TTCAATGATAACA
* * * *
183658 TTGCAGTGTTTACAGTGTCACTACCGATTCAGTTATAATA
1 TTGCAGTGTTTATAGTGTCACTACCGATTCAATGATAACA
183698 TTGCAGTGTTTATAGTGTCACT
1 TTGCAGTGTTTATAGTGTCACT
183720 GTTAACTCAG
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
40 53 0.98
41 1 0.02
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.38
Consensus pattern (40 bp):
TTGCAGTGTTTATAGTGTCACTACCGATTCAATGATAACA
Found at i:183730 original size:40 final size:38
Alignment explanation
Indices: 183618--183737 Score: 89
Period size: 40 Copynumber: 3.1 Consensus size: 38
183608 GTATGACACG
* ** **
183618 TTGCAGTGTTTATAGTGTCACTACCAGTTCAATGGT-AACC
1 TTGCAGTGTTTACAGTGTCACTACCAACTC-A--GTAAATA
* *
183658 TTGCAGTGTTTACAGTGTCACTACCGATTCAGTTATAATA
1 TTGCAGTGTTTACAGTGTCACTACCAACTCAG-TA-AATA
* ***
183698 TTGCAGTGTTTATAGTGTCACTGTTAACTCAGTAAATA
1 TTGCAGTGTTTACAGTGTCACTACCAACTCAGTAAATA
183736 TT
1 TT
183738 CTCAAGTGTT
Statistics
Matches: 66, Mismatches: 11, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
37 1 0.02
38 7 0.11
39 3 0.05
40 55 0.83
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (38 bp):
TTGCAGTGTTTACAGTGTCACTACCAACTCAGTAAATA
Found at i:184251 original size:53 final size:53
Alignment explanation
Indices: 184162--184323 Score: 202
Period size: 53 Copynumber: 3.1 Consensus size: 53
184152 CAAAACCATG
* * * * *
184162 TAAC-CATACCCATGTGTTAGCCCATGTTCCCTAGAACAGTATACACACACCC
1 TAACACATGCCCATGTGTCAACCCATGTGCCCCAGAACAGTATACACACACCC
*
184214 TAACACATGCCCATGTGTCAACCCATGTGCCCCAGAACAGTATACACACACCT
1 TAACACATGCCCATGTGTCAACCCATGTGCCCCAGAACAGTATACACACACCC
* * * * *
184267 TGACACACGCCCGTGTG-CCACCCTATGTGCCTCAGAACAGTATACACACACCC
1 TAACACATGCCCATGTGTCAACCC-ATGTGCCCCAGAACAGTATACACACACCC
184320 TAAC
1 TAAC
184324 TTGTGCCCGT
Statistics
Matches: 95, Mismatches: 13, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
52 9 0.09
53 86 0.91
ACGTcount: A:0.30, C:0.36, G:0.14, T:0.20
Consensus pattern (53 bp):
TAACACATGCCCATGTGTCAACCCATGTGCCCCAGAACAGTATACACACACCC
Found at i:184332 original size:53 final size:52
Alignment explanation
Indices: 184194--184370 Score: 196
Period size: 53 Copynumber: 3.3 Consensus size: 52
184184 CATGTTCCCT
* *
184194 AGAACAGTATACACACACCCTAACACATGCCCATGTGTCAACCCATGTGCCCC
1 AGAACAGTATACACACACCCTAACACATGCCCGTGTG-CAACCCATGTGCCTC
* * * *
184247 AGAACAGTATACACACACCTTGACACACGCCCGTGTGCCACCCTATGTGCCTC
1 AGAACAGTATACACACACCCTAACACATGCCCGTGTGCAACCC-ATGTGCCTC
*** * *
184300 AGAACAGTATACACACACCCTAACTTGTGCCCGTGTGCTAGCCCGTGTGCCTCC
1 AGAACAGTATACACACACCCTAACACATGCCCGTGTGC-AACCCATGTGCCT-C
184354 A-AA-ATGTATACACACAC
1 AGAACA-GTATACACACAC
184371 ACCTTGACAT
Statistics
Matches: 105, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
52 6 0.06
53 94 0.90
54 5 0.05
ACGTcount: A:0.29, C:0.36, G:0.16, T:0.19
Consensus pattern (52 bp):
AGAACAGTATACACACACCCTAACACATGCCCGTGTGCAACCCATGTGCCTC
Found at i:184461 original size:55 final size:56
Alignment explanation
Indices: 184330--184541 Score: 186
Period size: 55 Copynumber: 3.8 Consensus size: 56
184320 TAACTTGTGC
* * * *
184330 CCGTGTGCTAGCCCGTGTGCCTCCAAA-ATGTATACACACACACCTT-GACATA--T
1 CCGTGTGTTAGCCCGTGTGCCTCCAAACA-ATATAGACACACACCTTGGACACACCT
** * * * * * * *
184383 ACCTGTGTGCCAACCTGTATGCCTCCAAACATTTTATATACACACCTTGG-CACACGCT
1 -CC-GTGTGTTAGCCCGTGTGCCTCCAAACAATATAGACACACACCTTGGACACAC-CT
* * *
184441 -CGTGTGTTGGCCCGTGTGCCTCCAAATAATATAGACACATACCTTGGACACACCT
1 CCGTGTGTTAGCCCGTGTGCCTCCAAACAATATAGACACACACCTTGGACACACCT
*
184496 CCGTGTGTTAGCCCGTGTGCCTTCAAACAATATAGACACAC-CCTTG
1 CCGTGTGTTAGCCCGTGTGCCTCCAAACAATATAGACACACACCTTG
184542 TGTGCCAACC
Statistics
Matches: 125, Mismatches: 25, Indels: 15
0.76 0.15 0.09
Matches are distributed among these distances:
54 2 0.02
55 78 0.62
56 44 0.35
58 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.26
Consensus pattern (56 bp):
CCGTGTGTTAGCCCGTGTGCCTCCAAACAATATAGACACACACCTTGGACACACCT
Found at i:184510 original size:56 final size:55
Alignment explanation
Indices: 184402--184535 Score: 171
Period size: 56 Copynumber: 2.4 Consensus size: 55
184392 CCAACCTGTA
* * * * * *
184402 TGCCTCCAAACATTTTATATACACACCTTGGCACACGCTCGTGTGTTGGCCCGTG
1 TGCCTCCAAACAATATAGACACATACCTTGGCACACGCTCGTGTGTTAGCCCGTG
*
184457 TGCCTCCAAATAATATAGACACATACCTTGGACACAC-CTCCGTGTGTTAGCCCGTG
1 TGCCTCCAAACAATATAGACACATACCTTGG-CACACGCT-CGTGTGTTAGCCCGTG
*
184513 TGCCTTCAAACAATATAGACACA
1 TGCCTCCAAACAATATAGACACA
184536 CCCTTGTGTG
Statistics
Matches: 68, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
55 27 0.40
56 41 0.60
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (55 bp):
TGCCTCCAAACAATATAGACACATACCTTGGCACACGCTCGTGTGTTAGCCCGTG
Found at i:189296 original size:6 final size:6
Alignment explanation
Indices: 189285--189376 Score: 66
Period size: 6 Copynumber: 15.8 Consensus size: 6
189275 TTTTTTTTAA
* * * * *
189285 TTAAAT TTAAAT TTAAA- ATAAAT TTAAAC TCAAA- ATAAGT TTAAAT
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
* * * *
189331 TTAAA- ATAAAT TTAAAC TTAAA- ATAAAT TAAAAT TTAAAAT TTAAA
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TT-AAAT TTAAA
189377 ATTGGGTTCA
Statistics
Matches: 65, Mismatches: 16, Indels: 10
0.71 0.18 0.11
Matches are distributed among these distances:
5 14 0.22
6 45 0.69
7 6 0.09
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.38
Consensus pattern (6 bp):
TTAAAT
Found at i:189308 original size:17 final size:17
Alignment explanation
Indices: 189286--189371 Score: 127
Period size: 17 Copynumber: 5.1 Consensus size: 17
189276 TTTTTTTAAT
189286 TAAATTTAAATTTAAAA
1 TAAATTTAAATTTAAAA
* *
189303 TAAATTTAAACTCAAAA
1 TAAATTTAAATTTAAAA
*
189320 TAAGTTTAAATTTAAAA
1 TAAATTTAAATTTAAAA
*
189337 TAAATTTAAACTTAAAA
1 TAAATTTAAATTTAAAA
*
189354 TAAATTAAAATTTAAAA
1 TAAATTTAAATTTAAAA
189371 T
1 T
189372 TTAAAATTGG
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 60 1.00
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.37
Consensus pattern (17 bp):
TAAATTTAAATTTAAAA
Found at i:189328 original size:34 final size:34
Alignment explanation
Indices: 189286--189371 Score: 145
Period size: 34 Copynumber: 2.5 Consensus size: 34
189276 TTTTTTTAAT
189286 TAAATTTAAATTTAAAATAAATTTAAACTCAAAA
1 TAAATTTAAATTTAAAATAAATTTAAACTCAAAA
* *
189320 TAAGTTTAAATTTAAAATAAATTTAAACTTAAAA
1 TAAATTTAAATTTAAAATAAATTTAAACTCAAAA
*
189354 TAAATTAAAATTTAAAAT
1 TAAATTTAAATTTAAAAT
189372 TTAAAATTGG
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 48 1.00
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.37
Consensus pattern (34 bp):
TAAATTTAAATTTAAAATAAATTTAAACTCAAAA
Found at i:190021 original size:78 final size:78
Alignment explanation
Indices: 189914--190864 Score: 863
Period size: 78 Copynumber: 12.3 Consensus size: 78
189904 TCTGCACTTA
* ** *
189914 GCTCGGGGTAAGAGATTAGCTGATGGTGATCTGCCCCATGCTCGAGGTAAAAGATCGAATAACTA
1 GCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCATGCTCGAGGTAAAAGATCGAATGGCTG
*
189979 CAATCTGCCCCGG
66 CAATCTGCCCCAG
* * * *
189992 GCTCGGGGTAAGAGATTGGATGATAGTGATCTGCCCCATGCTCAAGGTAAAAGATCGAATGGCTA
1 GCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCATGCTCGAGGTAAAAGATCGAATGGCTG
*
190057 CAATCTGCCCTAG
66 CAATCTGCCCCAG
* * * * * * *
190070 GCTCAGGGTAAGAGATTGGTTGATGGTGATTTACCCCATGCTCAAGGTAAAATATCGAATGACTG
1 GCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCATGCTCGAGGTAAAAGATCGAATGGCTG
**
190135 CAATCTGCCTTAG
66 CAATCTGCCCCAG
* * * * *
190148 GCTCAGGGTAAGAGATTGGCTGATGGTGATTTG-CCCAAGCTC-AGGGTAAGAGATCGGATGGCT
1 GCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCATGCTCGA-GGTAAAAGATCGAATGGCT
* * *
190211 GTAATCTACCCCAT
65 GCAATCTGCCCCAG
* * *
190225 GCTCGGGGTAAGAGATTGGTTGATGGTGATCTGCCTCATGCTCGAGGTAAAA-ATTGAATGGCTG
1 GCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCATGCTCGAGGTAAAAGATCGAATGGCTG
* * * *
190289 TAATTTTCCCCAA
66 CAATCTGCCCCAG
* * * * * *
190302 GCTTGAGGTAAAAGATTGGCTGATGGTGTTCTGGCCCATGCTCGAGGTAAAAGATCGAATGACTG
1 GCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCATGCTCGAGGTAAAAGATCGAATGGCTG
* * *
190367 TAATCTGCTCCAA
66 CAATCTGCCCCAG
* * * * *
190380 GCTCGAGGTAAGAGATTGG-T--TGAT-ATCTGGCCCATGCTCGAGGTAAAAGATTGAATGGTTG
1 GCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCATGCTCGAGGTAAAAGATCGAATGGCTG
*
190441 CAATCTGCCCTAG
66 CAATCTGCCCCAG
* * * * * *
190454 GCACGAGGTAAGAGATTGGCTGATGGTGATCTG-CTCAGGCTCGGGGTAAGAGATCGAATGGCTG
1 GCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCATGCTCGAGGTAAAAGATCGAATGGCTG
* ** * *
190518 TAATCTATCTCAT
66 CAATCTGCCCCAG
* * ** * *
190531 GCTCGGAGTAAAAGATTGGCTGACT-GTGATCTGCCTTAGGCTCGGGGTAAAAGATCTG-ATGGC
1 GCTCGGGGTAAGAGATTGGCTGA-TGGTGATCTGCCCCATGCTCGAGGTAAAAGATC-GAATGGC
* *
190594 TACAATCT-ACCCAG
64 TGCAATCTGCCCCAG
*** * * * ** *
190608 GCTTAAGGTAAGAGATTGGCTGATGGTAATCTGCCCTAGGCTTAAGGTTAAAGATC-AGATGGCT
1 GCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCATGCTCGAGGTAAAAGATCGA-ATGGCT
* * *
190672 GCAATCTACCCTAC
65 GCAATCTGCCCCAG
* * ** * *
190686 GCTCGGGGTAAGAGATTGGCTGACT-GTGATTTACCTTAGGCTC-AGAGTAAAAGATATG-ATGG
1 GCTCGGGGTAAGAGATTGGCTGA-TGGTGATCTGCCCCATGCTCGAG-GTAAAAGAT-CGAATGG
* *
190748 CTACAATTTGCCCCAG
63 CTGCAATCTGCCCCAG
* * * *
190764 GCTCGGGGTAAGAGATTGGCTAATGGTGACCTGCCCCA-GACTCGGGGTAAAAGATCAAATGGCT
1 GCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCATG-CTCGAGGTAAAAGATCGAATGGCT
* *
190828 GCAATCTACCCCAA
65 GCAATCTGCCCCAG
*
190842 GCTCAGGGTAAGAGATTGGCTGA
1 GCTCGGGGTAAGAGATTGGCTGA
190865 CTGTAATCTA
Statistics
Matches: 717, Mismatches: 133, Indels: 46
0.80 0.15 0.05
Matches are distributed among these distances:
74 60 0.08
75 4 0.01
76 2 0.00
77 252 0.35
78 395 0.55
79 4 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (78 bp):
GCTCGGGGTAAGAGATTGGCTGATGGTGATCTGCCCCATGCTCGAGGTAAAAGATCGAATGGCTG
CAATCTGCCCCAG
Found at i:190273 original size:155 final size:154
Alignment explanation
Indices: 189913--190873 Score: 868
Period size: 155 Copynumber: 6.2 Consensus size: 154
189903 ATCTGCACTT
* * **
189913 AGCTCGGGGTAAGAGATTAGCTGATGGTGATCTGCCCCATGCTCGAGGTAAAAGATCGAATAACT
1 AGCTCGGGGTAAGAGATTGGCTGAT-GTGATCTGCCTCATGCTCGAGGTAAAAGATCGAATGGCT
* * * * * *
189978 ACAATCTGCCCCGGGCTCGGGGTAAGAGATTGGATGATAGTGATCTGCCCCATGCTCAAGGTAAA
65 ACAATCTGCCCCAGGCTCAGGGTAAGAGATTGGCTGATGGTGATCTG-CCCAAGCTCAGGGTAAA
* * *
190043 AGATCGAATGGCTACAATCTGCCCTA
129 AGATCGAATGGCTGCAATCTACCCCA
* * * * * * * * *
190069 GGCTCAGGGTAAGAGATTGGTTGATGGTGATTTACCCCATGCTCAAGGTAAAATATCGAATGACT
1 AGCTCGGGGTAAGAGATTGGCTGAT-GTGATCTGCCTCATGCTCGAGGTAAAAGATCGAATGGCT
* ** * *
190134 GCAATCTGCCTTAGGCTCAGGGTAAGAGATTGGCTGATGGTGATTTGCCCAAGCTCAGGGTAAGA
65 ACAATCTGCCCCAGGCTCAGGGTAAGAGATTGGCTGATGGTGATCTGCCCAAGCTCAGGGTAAAA
* *
190199 GATCGGATGGCTGTAATCTACCCCA
130 GATCGAATGGCTGCAATCTACCCCA
* * *
190224 TGCTCGGGGTAAGAGATTGGTTGATGGTGATCTGCCTCATGCTCGAGGTAAAA-ATTGAATGGCT
1 AGCTCGGGGTAAGAGATTGGCTGAT-GTGATCTGCCTCATGCTCGAGGTAAAAGATCGAATGGCT
** * * * * * * *
190288 GTAATTTTCCCCAAGCT-TGAGGTAAAAGATTGGCTGATGGTGTTCTGGCCCATGCTC-GAGGTA
65 ACAATCTGCCCCAGGCTCAG-GGTAAGAGATTGGCTGATGGTGATCT-GCCCAAGCTCAG-GGTA
* * * *
190351 AAAGATCGAATGACTGTAATCTGCTCCA
127 AAAGATCGAATGGCTGCAATCTACCCCA
* * * *
190379 AGCTCGAGGTAAGAGATTGGTTGA--T-ATCTGGCC-CATGCTCGAGGTAAAAGATTGAATGGTT
1 AGCTCGGGGTAAGAGATTGGCTGATGTGATCT-GCCTCATGCTCGAGGTAAAAGATCGAATGGCT
* * * * * * *
190440 GCAATCTGCCCTAGGCAC-GAGGTAAGAGATTGGCTGATGGTGATCTGCTCAGGCTCGGGGTAAG
65 ACAATCTGCCCCAGGCTCAG-GGTAAGAGATTGGCTGATGGTGATCTGCCCAAGCTCAGGGTAAA
* * *
190504 AGATCGAATGGCTGTAATCTATCTCA
129 AGATCGAATGGCTGCAATCTACCCCA
* * * * * *
190530 TGCTCGGAGTAAAAGATTGGCTGACTGTGATCTGCCTTAGGCTCGGGGTAAAAGATCTG-ATGGC
1 AGCTCGGGGTAAGAGATTGGCTGA-TGTGATCTGCCTCATGCTCGAGGTAAAAGATC-GAATGGC
* * * * * * * *
190594 TACAATCT-ACCCAGGCTTAAGGTAAGAGATTGGCTGATGGTAATCTGCCCTAGGCTTAAGGTTA
64 TACAATCTGCCCCAGGCTCAGGGTAAGAGATTGGCTGATGGTGATCTGCCC-AAGCTCAGGGTAA
*
190658 AAGATC-AGATGGCTGCAATCTACCCTA
128 AAGATCGA-ATGGCTGCAATCTACCCCA
* * * * * *
190685 CGCTCGGGGTAAGAGATTGGCTGACTGTGATTTACCTTAGGCTC-AGAGTAAAAGATATG-ATGG
1 AGCTCGGGGTAAGAGATTGGCTGA-TGTGATCTGCCTCATGCTCGAG-GTAAAAGAT-CGAATGG
* * * * * *
190748 CTACAATTTGCCCCAGGCTCGGGGTAAGAGATTGGCTAATGGTGACCTGCCCCAGACTCGGGGTA
63 CTACAATCTGCCCCAGGCTCAGGGTAAGAGATTGGCTGATGGTGATCTGCCCAAG-CTCAGGGTA
*
190813 AAAGATCAAATGGCTGCAATCTACCCCA
127 AAAGATCGAATGGCTGCAATCTACCCCA
* *
190841 AGCTCAGGGTAAGAGATTGGCTGACTGTAATCT
1 AGCTCGGGGTAAGAGATTGGCTGA-TGTGATCT
190874 ACCCTAGGTA
Statistics
Matches: 663, Mismatches: 121, Indels: 42
0.80 0.15 0.05
Matches are distributed among these distances:
151 73 0.11
152 52 0.08
153 1 0.00
154 84 0.13
155 262 0.40
156 190 0.29
157 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (154 bp):
AGCTCGGGGTAAGAGATTGGCTGATGTGATCTGCCTCATGCTCGAGGTAAAAGATCGAATGGCTA
CAATCTGCCCCAGGCTCAGGGTAAGAGATTGGCTGATGGTGATCTGCCCAAGCTCAGGGTAAAAG
ATCGAATGGCTGCAATCTACCCCA
Found at i:190419 original size:35 final size:37
Alignment explanation
Indices: 190331--190436 Score: 119
Period size: 35 Copynumber: 2.9 Consensus size: 37
190321 CTGATGGTGT
*
190331 TCTGGCCCATGCTCGAGGTAAAAGATCGAATGACTGTAA
1 TCTGGCCCATGCTCGAGGTAAAAGATTGAATGAC--TAA
* * **
190370 TCT-GCTCCAAGCTCGAGGTAAGAGATTGGTTGA-T-A
1 TCTGGC-CCATGCTCGAGGTAAAAGATTGAATGACTAA
190405 TCTGGCCCATGCTCGAGGTAAAAGATTGAATG
1 TCTGGCCCATGCTCGAGGTAAAAGATTGAATG
190437 GTTGCAATCT
Statistics
Matches: 56, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
35 26 0.46
36 3 0.05
38 2 0.04
39 25 0.45
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.25
Consensus pattern (37 bp):
TCTGGCCCATGCTCGAGGTAAAAGATTGAATGACTAA
Found at i:190877 original size:39 final size:39
Alignment explanation
Indices: 189914--190873 Score: 275
Period size: 39 Copynumber: 24.8 Consensus size: 39
189904 TCTGCACTTA
* * * * *
189914 GCTCGGGGTAAGAGATTAGCTGA-TGGTGATCTGCCCCAT
1 GCTCAGGGTAAGAGATTGGATGACT-GTAATCTGCCCCAG
* * * * ** *
189953 GCTC-GAGGTAAAAGATCGAATAACTACAATCTGCCCCGG
1 GCTCAG-GGTAAGAGATTGGATGACTGTAATCTGCCCCAG
* * *
189992 GCTCGGGGTAAGAGATTGGATGA-TAGTGATCTGCCCCAT
1 GCTCAGGGTAAGAGATTGGATGACT-GTAATCTGCCCCAG
* * * * * ** *
190031 GCTCAAGGTAAAAGATCGAATGGCTACAATCTGCCCTAG
1 GCTCAGGGTAAGAGATTGGATGACTGTAATCTGCCCCAG
* * * * *
190070 GCTCAGGGTAAGAGATTGGTTGA-TGGTGATTTACCCCAT
1 GCTCAGGGTAAGAGATTGGATGACT-GTAATCTGCCCCAG
* * * * * * **
190109 GCTCAAGGTAAAATATCGAATGACTGCAATCTGCCTTAG
1 GCTCAGGGTAAGAGATTGGATGACTGTAATCTGCCCCAG
* * * *
190148 GCTCAGGGTAAGAGATTGGCTGA-TGGTGATTTG-CCCAA
1 GCTCAGGGTAAGAGATTGGATGACT-GTAATCTGCCCCAG
* * * *
190186 GCTCAGGGTAAGAGATCGGATGGCTGTAATCTACCCCAT
1 GCTCAGGGTAAGAGATTGGATGACTGTAATCTGCCCCAG
* * * * *
190225 GCTCGGGGTAAGAGATTGGTTGA-TGGTGATCTGCCTCAT
1 GCTCAGGGTAAGAGATTGGATGACT-GTAATCTGCCCCAG
* * * * * *
190264 GCTC-GAGGTAA-AAATTGAATGGCTGTAATTTTCCCCAA
1 GCTCAG-GGTAAGAGATTGGATGACTGTAATCTGCCCCAG
* * * ** * *
190302 GCT-TGAGGTAAAAGATTGGCTGA-TGGTGTTCTGGCCCAT
1 GCTCAG-GGTAAGAGATTGGATGACT-GTAATCTGCCCCAG
* * * * *
190341 GCTC-GAGGTAAAAGATCGAATGACTGTAATCTGCTCCAA
1 GCTCAG-GGTAAGAGATTGGATGACTGTAATCTGCCCCAG
* * *
190380 GCTC-GAGGTAAGAGATTGGTTGA---T-ATCTGGCCCAT
1 GCTCAG-GGTAAGAGATTGGATGACTGTAATCTGCCCCAG
* * ** * *
190415 GCTC-GAGGTAAAAGATTGAATGGTTGCAATCTGCCCTAG
1 GCTCAG-GGTAAGAGATTGGATGACTGTAATCTGCCCCAG
* * * *
190454 GCAC-GAGGTAAGAGATTGGCTGA-TGGTGATCTG-CTCAG
1 GCTCAG-GGTAAGAGATTGGATGACT-GTAATCTGCCCCAG
* * * * ** * *
190492 GCTCGGGGTAAGAGATCGAATGGCTGTAATCTATCTCAT
1 GCTCAGGGTAAGAGATTGGATGACTGTAATCTGCCCCAG
* * * **
190531 GCTC-GGAGTAAAAGATTGGCTGACTGTGATCTGCCTTAG
1 GCTCAGG-GTAAGAGATTGGATGACTGTAATCTGCCCCAG
* * * ** *
190570 GCTCGGGGTAAAAGATCT-GATGGCTACAATCT-ACCCAG
1 GCTCAGGGTAAGAGAT-TGGATGACTGTAATCTGCCCCAG
* * * *
190608 GCTTAAGGTAAGAGATTGGCTGA-TGGTAATCTGCCCTAG
1 GCTCAGGGTAAGAGATTGGATGACT-GTAATCTGCCCCAG
* * ** * * * * *
190647 GCTTAAGGTTAA-AGATCAGATGGCTGCAATCTACCCTAC
1 GC-TCAGGGTAAGAGATTGGATGACTGTAATCTGCCCCAG
* * * * * **
190686 GCTCGGGGTAAGAGATTGGCTGACTGTGATTTACCTTAG
1 GCTCAGGGTAAGAGATTGGATGACTGTAATCTGCCCCAG
* * * ** *
190725 GCTCAGAGTAAAAGATAT-GATGGCTACAATTTGCCCCAG
1 GCTCAGGGTAAGAGAT-TGGATGACTGTAATCTGCCCCAG
* * * * *
190764 GCTCGGGGTAAGAGATTGGCT-AATGGTGACCTGCCCCAG
1 GCTCAGGGTAAGAGATTGGATGACT-GTAATCTGCCCCAG
* * * *** * * * *
190803 ACTCGGGGTAAAAGATCAAATGGCTGCAATCTACCCCAA
1 GCTCAGGGTAAGAGATTGGATGACTGTAATCTGCCCCAG
*
190842 GCTCAGGGTAAGAGATTGGCTGACTGTAATCT
1 GCTCAGGGTAAGAGATTGGATGACTGTAATCT
190874 ACCCTAGGTA
Statistics
Matches: 646, Mismatches: 236, Indels: 78
0.67 0.25 0.08
Matches are distributed among these distances:
35 27 0.04
36 1 0.00
37 2 0.00
38 119 0.18
39 480 0.74
40 17 0.03
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.26
Consensus pattern (39 bp):
GCTCAGGGTAAGAGATTGGATGACTGTAATCTGCCCCAG
Found at i:191229 original size:50 final size:50
Alignment explanation
Indices: 191175--191667 Score: 259
Period size: 50 Copynumber: 10.1 Consensus size: 50
191165 CAATCTTGTT
* * * *
191175 TTCTAAGGTATCGGGTTCGCTGTTACGGCCTCAACCTTTCCCTTCATATC
1 TTCTAAGGTACCGGGTTCACTGTTGCGGCCTCAACCTTTCCCTTCACATC
* * * * * * * ** *
191225 TTCTAAGGTACCAGGTTCGCCGTTTCGACCTCAACATTTCCGTGAAAATC
1 TTCTAAGGTACCGGGTTCACTGTTGCGGCCTCAACCTTTCCCTTCACATC
* ** * * * *
191275 TTC-ATGGTACTAGGTTC-GTCATTGCAGCCTCAACCTTTCCCATCACAT-
1 TTCTAAGGTACCGGGTTCACT-GTTGCGGCCTCAACCTTTCCCTTCACATC
* * * * *
191323 TTC-ATGGTACCTGATTCACTGTTGCGGCCTCAATCTTTCCCATCACATC
1 TTCTAAGGTACCGGGTTCACTGTTGCGGCCTCAACCTTTCCCTTCACATC
* * * * * * * *
191372 TTCTGAGGCACAGAGTTCA-TCGTTGTGACCTTAACCTTT-CCTGTCATATC
1 TTCTAAGGTACCGGGTTCACT-GTTGCGGCCTCAACCTTTCCCT-TCACATC
* * *
191422 TTTTAAGGTACCGGGTTCACTGTTGCAGCCTCAACCTTTCCCTTCAAATC
1 TTCTAAGGTACCGGGTTCACTGTTGCGGCCTCAACCTTTCCCTTCACATC
* ** * * *
191472 TT-TATGGTATTGGGTTC-GTCGTTGCGGCCTCAACCTTTTTCATT-ACAT-
1 TTCTAAGGTACCGGGTTCACT-GTTGCGGCCTCAACC-TTTCCCTTCACATC
* *
191520 TTC-ATGGTACC-GGAT--C-GTTGCGGCCTCAATCC-TT-CCTATCACATC
1 TTCTAAGGTACCGGGTTCACTGTTGCGGCCTCAA-CCTTTCCCT-TCACATC
* * ** ** *
191565 TTCTGAGGTACCGGATTCACCATCACGGCCTCAATCC-TTCCCATCACATC
1 TTCTAAGGTACCGGGTTCACTGTTGCGGCCTCAA-CCTTTCCCTTCACATC
* * * * *
191615 TTCTTAA-GTATCGGGTTTACTGTTACGGCCTCAACTTTTCCCTTCAAATC
1 TTC-TAAGGTACCGGGTTCACTGTTGCGGCCTCAACCTTTCCCTTCACATC
191665 TTC
1 TTC
191668 ATGTTTTTCT
Statistics
Matches: 335, Mismatches: 85, Indels: 46
0.72 0.18 0.10
Matches are distributed among these distances:
42 2 0.01
43 3 0.01
44 17 0.05
45 5 0.01
46 6 0.02
47 5 0.01
48 48 0.14
49 68 0.20
50 173 0.52
51 8 0.02
ACGTcount: A:0.19, C:0.30, G:0.16, T:0.35
Consensus pattern (50 bp):
TTCTAAGGTACCGGGTTCACTGTTGCGGCCTCAACCTTTCCCTTCACATC
Found at i:191423 original size:147 final size:148
Alignment explanation
Indices: 191194--191463 Score: 307
Period size: 147 Copynumber: 1.8 Consensus size: 148
191184 ATCGGGTTCG
* * * *
191194 CTGTTACGGCCTCAACCTTTCCCTTCATATCTTCTAAGGTACCAGGTTCGCCGTTTCGACCTCAA
1 CTGTTACGGCCTCAACCTTTCCCATCACATCTTCTAAGGCACCAGGTTCACCGTTTCGACCTCAA
* * *
191259 CATTTCCGTGAAAATC-TTCATGGTACTAGGTTC-GTCATTGCAGCCTCAACCTTTCCCATCACA
66 CATTTCCGTGAAAATCTTTCAAGGTACCAGGTTCACT-ATTGCAGCCTCAACCTTTCCCATCACA
191322 TTTCATGGTACCTGATTCA
130 TTTCATGGTACCTGATTCA
* * * * *
191341 CTGTTGCGGCCTCAATCTTTCCCATCACATCTTCTGAGGCA-CAGAGTTCATCGTTGT-GACCTT
1 CTGTTACGGCCTCAACCTTTCCCATCACATCTTCTAAGGCACCAG-GTTCACCGTT-TCGACCTC
* * * * * *
191404 AACCTTTCC-TGTCATATCTTTTAAGGTACCGGGTTCACTGTTGCAGCCTCAACCTTTCCC
64 AACATTTCCGTG-AAAATCTTTCAAGGTACCAGGTTCACTATTGCAGCCTCAACCTTTCCC
191464 TTCAAATCTT
Statistics
Matches: 100, Mismatches: 18, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
146 5 0.05
147 60 0.60
148 34 0.34
149 1 0.01
ACGTcount: A:0.20, C:0.31, G:0.16, T:0.34
Consensus pattern (148 bp):
CTGTTACGGCCTCAACCTTTCCCATCACATCTTCTAAGGCACCAGGTTCACCGTTTCGACCTCAA
CATTTCCGTGAAAATCTTTCAAGGTACCAGGTTCACTATTGCAGCCTCAACCTTTCCCATCACAT
TTCATGGTACCTGATTCA
Found at i:191657 original size:193 final size:196
Alignment explanation
Indices: 191203--191670 Score: 491
Period size: 197 Copynumber: 2.4 Consensus size: 196
191193 GCTGTTACGG
* * * * * * * * *
191203 CCTCAACCTTTCCCTTCATATCTTCTAAGGTACCAGGTTCGCCGTTTC-GACCTCAACATTTCCG
1 CCTCAACCTTTCCCATCACATCTTTTAAGGTACCGGGTTCACTGTTACAG-CCTCAACCTTTCCC
**
191267 TGAAAATCTTCATGGTACTAGGTTCGTCATTGCAGCCTCAACCTTTCCCATCACATTTCATGGTA
65 TTCAAATCTTCATGGTACTAGGTTCGTCATTGCAGCCTCAACCTTTCCCATCACATTTCATGGTA
* * * * **
191332 CCTGATTCACTGTTGCGGCCTCAATCTTTCCCATCACATCTTCTGAGGCACAGAGTTCATCGTTG
130 CCGGATT-ACTGTTGCGGCCTCAATCCTTCCCATCACATCTTCTGAGGCACAGAGTTCACCATCA
*
191397 TGA
194 CGA
* ** * *
191400 CCTTAACCTTTCCTGTCATATCTTTTAAGGTACCGGGTTCACTGTTGCAGCCTCAACCTTTCCCT
1 CCTCAACCTTTCCCATCACATCTTTTAAGGTACCGGGTTCACTGTTACAGCCTCAACCTTTCCCT
* * * * * ** *
191465 TCAAATCTTTATGGTATTGGGTTCGTCGTTGCGGCCTCAACCTTTTTCATTACATTTCATGGTAC
66 TCAAATCTTCATGGTACTAGGTTCGTCATTGCAGCCTCAACCTTTCCCATCACATTTCATGGTAC
* * *
191530 CGGA-T-C-GTTGCGGCCTCAATCCTTCCTATCACATCTTCTGAGGTACCG-GATTCACCATCAC
131 CGGATTACTGTTGCGGCCTCAATCCTTCCCATCACATCTTCTGAGGCACAGAG-TTCACCATCAC
*
191591 GG
195 GA
* * * *
191593 CCTCAATCC-TTCCCATCACATCTTCTTAA-GTATCGGGTTTACTGTTACGGCCTCAACTTTTCC
1 CCTCAA-CCTTTCCCATCACATCTT-TTAAGGTACCGGGTTCACTGTTACAGCCTCAACCTTTCC
191656 CTTCAAATCTTCATG
64 CTTCAAATCTTCATG
191671 TTTTTCTCAG
Statistics
Matches: 226, Mismatches: 41, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
192 1 0.00
193 105 0.46
194 7 0.03
196 1 0.00
197 111 0.49
198 1 0.00
ACGTcount: A:0.20, C:0.30, G:0.16, T:0.35
Consensus pattern (196 bp):
CCTCAACCTTTCCCATCACATCTTTTAAGGTACCGGGTTCACTGTTACAGCCTCAACCTTTCCCT
TCAAATCTTCATGGTACTAGGTTCGTCATTGCAGCCTCAACCTTTCCCATCACATTTCATGGTAC
CGGATTACTGTTGCGGCCTCAATCCTTCCCATCACATCTTCTGAGGCACAGAGTTCACCATCACG
A
Found at i:192639 original size:23 final size:21
Alignment explanation
Indices: 192612--192686 Score: 68
Period size: 21 Copynumber: 3.5 Consensus size: 21
192602 CGACCATTCC
192612 TTTTCTTTTTCCCATTTTTTCTA
1 TTTTCTTTTT-CC-TTTTTTCTA
192635 TTTTCTTTTTCCTTTTTTCT-
1 TTTTCTTTTTCCTTTTTTCTA
*
192655 TTCTT-TTCTTTCTTTTTTATCTA
1 TT-TTCTT-TTTCCTTTTT-TCTA
192678 --TTCTTTTTC
1 TTTTCTTTTTC
192687 ATTAAATCTA
Statistics
Matches: 46, Mismatches: 1, Indels: 13
0.77 0.02 0.22
Matches are distributed among these distances:
20 10 0.22
21 21 0.46
22 5 0.11
23 10 0.22
ACGTcount: A:0.05, C:0.20, G:0.00, T:0.75
Consensus pattern (21 bp):
TTTTCTTTTTCCTTTTTTCTA
Found at i:199195 original size:17 final size:17
Alignment explanation
Indices: 199173--199224 Score: 77
Period size: 17 Copynumber: 3.1 Consensus size: 17
199163 CTTTTTTAAT
199173 TAAATTTAAATTTAAAA
1 TAAATTTAAATTTAAAA
*
199190 TAAATTTAAACTTAAAA
1 TAAATTTAAATTTAAAA
* *
199207 TAAATTAAAATTGAAAA
1 TAAATTTAAATTTAAAA
199224 T
1 T
199225 TGAAAATTGG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (17 bp):
TAAATTTAAATTTAAAA
Found at i:199952 original size:41 final size:40
Alignment explanation
Indices: 199877--199955 Score: 97
Period size: 41 Copynumber: 1.9 Consensus size: 40
199867 AATTTAATGA
*
199877 TAAATAAATAAAAAAACAAACAAGATGATAAAAATAAATT
1 TAAATAAATAAAAAAACAAAAAAGATGATAAAAATAAATT
* * *
199917 TAAATAAAATAAAATAATAATAAAAGA-GATTAAAATAAA
1 TAAAT-AAATAAAAAAACAA-AAAAGATGATAAAAATAAA
199956 ATGTCTTGAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
40 5 0.15
41 23 0.70
42 5 0.15
ACGTcount: A:0.71, C:0.03, G:0.05, T:0.22
Consensus pattern (40 bp):
TAAATAAATAAAAAAACAAAAAAGATGATAAAAATAAATT
Found at i:200083 original size:15 final size:15
Alignment explanation
Indices: 200049--200090 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
200039 ATTAGGCATG
*
200049 AAAATAAAT-GACAA
1 AAAATAAATAAACAA
200063 ATAAATAAATAAACAA
1 A-AAATAAATAAACAA
*
200079 AAAATCAATAAA
1 AAAATAAATAAA
200091 TTAAATATCA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 1 0.04
15 18 0.75
16 5 0.21
ACGTcount: A:0.74, C:0.07, G:0.02, T:0.17
Consensus pattern (15 bp):
AAAATAAATAAACAA
Found at i:201384 original size:245 final size:244
Alignment explanation
Indices: 201041--201740 Score: 816
Period size: 245 Copynumber: 2.9 Consensus size: 244
201031 TCGCAGCTTG
* * * * *
201041 AACCTATCCCTCTTCGATTTTATGGTGTAAGATCGATCGTTGCAATTTTAATCTTTCCCTCTTTG
1 AACCTATCCCTCTTCGATTTTAAGGTGTAAGATCGATCGTTGCAACTTCAATCTTTTCCTCTTTA
* *
201106 GTTTTAGGGTGTTAGGTCTGTCGTTATGGCTTCAACCTATCCCACTTCAGTTTTAAGGTGTAAGG
66 GTTTTAGGGTGTTAGGTCTGCCGTTATGGCTTCAACCTATCCCTCTTCAGTTTTAAGGTGTAAGG
* * * * * *
201171 TCTATCGTTGCGGTTTCAACCTTTCCCTCTTTGGTTTTAGGGTGTTCGATCTGTCGTTGCAACTT
131 TCCATCGTTGCGGCTTCAACCTTTCCCTCTTTGGTTTTAGGGTGTTAGATCCGCCGTTGCAGCTT
* * *
201236 CAATCTATCCCTCTTCGATTTTAGTA-TGTTAAGTCCATCGTTGCGACTTC
196 CAATCTATCCCTCTT-GATTTTAG-AGTGTTAAGTCCATCATTACAACTTC
* * * *
201286 AATCTATCCCTCTTCGATTTTAAGGTGTAAGATTC-ATCGTTACCACTTCAATCTTTTCCTTTTT
1 AACCTATCCCTCTTCGATTTTAAGGTGTAAGA-TCGATCGTTGCAACTTCAATCTTTTCCTCTTT
*
201350 AGTTTTTGGGTGTTAGGTCTGCCGTT-TCGGCTTCAACCTATCCCTCTTCAGTTTTAAGGTGTAA
65 AGTTTTAGGGTGTTAGGTCTGCCGTTAT-GGCTTCAACCTATCCCTCTTCAGTTTTAAGGTGTAA
* * * * * * *
201414 GGTCCATCGTTGCAGCTTCAACCTTTCCCTTTTTAGTTTTAAGGTGTTAGATCCACCATTACAGC
129 GGTCCATCGTTGCGGCTTCAACCTTTCCCTCTTTGGTTTTAGGGTGTTAGATCCGCCGTTGCAGC
* * * * *
201479 TTCAATCTATCCCTCATTTATTTTCGAGTGTTAGGTTCATCATTACAACTTT
194 TTCAATCTATCCCTC-TTGATTTTAGAGTGTTAAGTCCATCATTACAACTTC
* * * * *** *
201531 AACCGATCCCTCTTCGATTTTAAGGTGTAAGATCTACCATTGTGGCTTCAATC-TTTCC-CTCTA
1 AACCTATCCCTCTTCGATTTTAAGGTGTAAGATCGATCGTTGCAACTTCAATCTTTTCCTCTTTA
* * * *
201594 CGATTTTAAGGTGTTAGGTCCGCCGTTATAGCTCCAACCTATCCCTCTTCAGTTTTAAGGTGTAA
66 -G-TTTTAGGGTGTTAGGTCTGCCGTTATGGCTTCAACCTATCCCTCTTCAGTTTTAAGGTGTAA
** * * * * *
201659 ATTCCACCGTTGCGGCTTCAACCTTTCCCTCTTCGATTTTAGGATGTTAGGTCCGCCGTTGCAGC
129 GGTCCATCGTTGCGGCTTCAACCTTTCCCTCTTTGGTTTTAGGGTGTTAGATCCGCCGTTGCAGC
* *
201724 TTCAACCTATCCTTCTT
194 TTCAATCTATCCCTCTT
201741 TAAACTCTAT
Statistics
Matches: 383, Mismatches: 64, Indels: 17
0.83 0.14 0.04
Matches are distributed among these distances:
243 3 0.01
244 12 0.03
245 363 0.95
246 5 0.01
ACGTcount: A:0.19, C:0.24, G:0.17, T:0.40
Consensus pattern (244 bp):
AACCTATCCCTCTTCGATTTTAAGGTGTAAGATCGATCGTTGCAACTTCAATCTTTTCCTCTTTA
GTTTTAGGGTGTTAGGTCTGCCGTTATGGCTTCAACCTATCCCTCTTCAGTTTTAAGGTGTAAGG
TCCATCGTTGCGGCTTCAACCTTTCCCTCTTTGGTTTTAGGGTGTTAGATCCGCCGTTGCAGCTT
CAATCTATCCCTCTTGATTTTAGAGTGTTAAGTCCATCATTACAACTTC
Found at i:201718 original size:49 final size:49
Alignment explanation
Indices: 200987--201740 Score: 423
Period size: 49 Copynumber: 15.4 Consensus size: 49
200977 CGTCAAAGTG
* * * * *** *
200987 GCTTCAATCTATCCCTCTTTGGTTTTAAGGTATTAGGTCTGCCGTCGCA
1 GCTTCAACCTATCCCTCTTCGATTTTAAGGTGTTAGGTCCATCGTTGCA
* * * * *
201036 GCTTGAACCTATCCCTCTTCGATTTTATGGTGTAAGATCGATCGTTGCA
1 GCTTCAACCTATCCCTCTTCGATTTTAAGGTGTTAGGTCCATCGTTGCA
** * * * * * * ** ***
201085 ATTTTAATCTTTCCCTCTTTGGTTTTAGGGTGTTAGGTCTGTCGTTATG
1 GCTTCAACCTATCCCTCTTCGATTTTAAGGTGTTAGGTCCATCGTTGCA
* * * *
201134 GCTTCAACCTATCCCACTTC-AGTTTTAAGGTGTAAGGTCTATCGTTGCG
1 GCTTCAACCTATCCCTCTTCGA-TTTTAAGGTGTTAGGTCCATCGTTGCA
* * * * * * * **
201183 GTTTCAACCTTTCCCTCTTTGGTTTTAGGGTGTTCGATCTGTCGTTGCA
1 GCTTCAACCTATCCCTCTTCGATTTTAAGGTGTTAGGTCCATCGTTGCA
* * * *
201232 ACTTCAATCTATCCCTCTTCGATTTT-AGTATGTTAAGTCCATCGTTGC-
1 GCTTCAACCTATCCCTCTTCGATTTTAAG-GTGTTAGGTCCATCGTTGCA
* * * * *
201280 GACTTCAATCTATCCCTCTTCGATTTTAAGGTGTAAGATTCATCGTTACCA
1 G-CTTCAACCTATCCCTCTTCGATTTTAAGGTGTTAGGTCCATCGTT-GCA
* * * ** ** *** * *
201331 -CTTCAATCTTTTCCT-TTTTAGTTTTTGGGTGTTAGGTCTGCCGTTTCG
1 GCTTCAACCTATCCCTCTTCGA-TTTTAAGGTGTTAGGTCCATCGTTGCA
*
201379 GCTTCAACCTATCCCTCTTC-AGTTTTAAGGTGTAAGGTCCATCGTTGCA
1 GCTTCAACCTATCCCTCTTCGA-TTTTAAGGTGTTAGGTCCATCGTTGCA
* ** * * * *
201428 GCTTCAACCTTTCCCT-TTTTAGTTTTAAGGTGTTAGATCCACCATTACA
1 GCTTCAACCTATCCCTCTTCGA-TTTTAAGGTGTTAGGTCCATCGTTGCA
* * * * * *
201477 GCTTCAATCTATCCCTCATT-TATTTT-CGAGTGTTAGGTTCATCATTACA
1 GCTTCAACCTATCCCTC-TTCGATTTTAAG-GTGTTAGGTCCATCGTTGCA
* * * * * * * * **
201526 ACTTTAACCGATCCCTCTTCGATTTTAAGGTGTAAGATCTACCATTGTG
1 GCTTCAACCTATCCCTCTTCGATTTTAAGGTGTTAGGTCCATCGTTGCA
* * * ** **
201575 GCTTCAATCTTTCCCTCTACGATTTTAAGGTGTTAGGTCCGCCGTTATA
1 GCTTCAACCTATCCCTCTTCGATTTTAAGGTGTTAGGTCCATCGTTGCA
* * ** * *
201624 GCTCCAACCTATCCCTCTTC-AGTTTTAAGGTGTAAATTCCACCGTTGCG
1 GCTTCAACCTATCCCTCTTCGA-TTTTAAGGTGTTAGGTCCATCGTTGCA
* **
201673 GCTTCAACCTTTCCCTCTTCGATTTT-AGGATGTTAGGTCCGCCGTTGCA
1 GCTTCAACCTATCCCTCTTCGATTTTAAGG-TGTTAGGTCCATCGTTGCA
*
201722 GCTTCAACCTATCCTTCTT
1 GCTTCAACCTATCCCTCTT
201741 TAAACTCTAT
Statistics
Matches: 529, Mismatches: 157, Indels: 38
0.73 0.22 0.05
Matches are distributed among these distances:
48 14 0.03
49 504 0.95
50 9 0.02
51 2 0.00
ACGTcount: A:0.18, C:0.24, G:0.18, T:0.40
Consensus pattern (49 bp):
GCTTCAACCTATCCCTCTTCGATTTTAAGGTGTTAGGTCCATCGTTGCA
Found at i:202818 original size:16 final size:17
Alignment explanation
Indices: 202799--202846 Score: 64
Period size: 16 Copynumber: 2.9 Consensus size: 17
202789 GTTTTCTTCT
202799 CTTTTT-TTTCTTTTTC
1 CTTTTTCTTTCTTTTTC
*
202815 CTTTTTCTCTCTTTTT-
1 CTTTTTCTTTCTTTTTC
*
202831 CTTTTTCTTTGTTTTT
1 CTTTTTCTTTCTTTTT
202847 TTTTTTTGCT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
16 20 0.71
17 8 0.29
ACGTcount: A:0.00, C:0.19, G:0.02, T:0.79
Consensus pattern (17 bp):
CTTTTTCTTTCTTTTTC
Found at i:202845 original size:26 final size:26
Alignment explanation
Indices: 202783--202846 Score: 71
Period size: 26 Copynumber: 2.5 Consensus size: 26
202773 TCAATCCCTC
202783 CTTTTTG-TTTTCTTCTCTTTTTTTT
1 CTTTTTGTTTTTCTTCTCTTTTTTTT
*
202808 CTTTTTCCTTTTTC-TCTCTTTTTCTTT
1 CTTTTT-GTTTTTCTTCTCTTTTT-TTT
202835 -TTCTTTGTTTTT
1 CTT-TTTGTTTTT
202847 TTTTTTTGCT
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
25 6 0.18
26 16 0.48
27 11 0.33
ACGTcount: A:0.00, C:0.19, G:0.03, T:0.78
Consensus pattern (26 bp):
CTTTTTGTTTTTCTTCTCTTTTTTTT
Found at i:202847 original size:17 final size:17
Alignment explanation
Indices: 202786--202852 Score: 57
Period size: 16 Copynumber: 3.9 Consensus size: 17
202776 ATCCCTCCTT
*
202786 TTTGTTTTCTTCTCTTTTT
1 TTTGTTTT-TTCT-TTTTC
* *
202805 TTTCTTTTTCCTTTTTC
1 TTTGTTTTTTCTTTTTC
* *
202822 TCT-CTTTTTCTTTTTC
1 TTTGTTTTTTCTTTTTC
202838 TTTGTTTTTT-TTTTT
1 TTTGTTTTTTCTTTTT
202853 TGCTAGTTTA
Statistics
Matches: 39, Mismatches: 8, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
16 18 0.46
17 11 0.28
18 3 0.08
19 7 0.18
ACGTcount: A:0.00, C:0.16, G:0.03, T:0.81
Consensus pattern (17 bp):
TTTGTTTTTTCTTTTTC
Found at i:202852 original size:16 final size:16
Alignment explanation
Indices: 202798--202851 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
202788 TGTTTTCTTC
*
202798 TCTTTTT-TTTCTTTT
1 TCTTTTTCTCTCTTTT
202813 TCCTTTTTCTCTCTTTT
1 T-CTTTTTCTCTCTTTT
* *
202830 TCTTTTTCTTTGTTTT
1 TCTTTTTCTCTCTTTT
202846 T-TTTTT
1 TCTTTTT
202852 TTGCTAGTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
15 6 0.18
16 20 0.59
17 8 0.24
ACGTcount: A:0.00, C:0.17, G:0.02, T:0.81
Consensus pattern (16 bp):
TCTTTTTCTCTCTTTT
Found at i:212001 original size:26 final size:27
Alignment explanation
Indices: 211950--212002 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
211940 ATGTTGATAC
211950 CAAAAGGTGATGCGAAAAAAAAGGTGT
1 CAAAAGGTGATGCGAAAAAAAAGGTGT
*
211977 CAAAAGGTGATGTG-AAAAAAAGGTGT
1 CAAAAGGTGATGCGAAAAAAAAGGTGT
212003 GAAAGAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 12 0.48
27 13 0.52
ACGTcount: A:0.47, C:0.06, G:0.30, T:0.17
Consensus pattern (27 bp):
CAAAAGGTGATGCGAAAAAAAAGGTGT
Found at i:212948 original size:29 final size:29
Alignment explanation
Indices: 212885--212967 Score: 82
Period size: 29 Copynumber: 2.9 Consensus size: 29
212875 AATTAATAAC
* *
212885 ACAATAAAAATATAATTATAGTATTAAAT
1 ACAATAAAAATATAATCATAGTAATAAAT
* *
212914 AAAATAACAATATAATCATAGTAAT-AAT
1 ACAATAAAAATATAATCATAGTAATAAAT
* *
212942 GACAATAAATAT-TAATTA-AGTAATAA
1 -ACAATAAAAATATAATCATAGTAATAA
212968 TATAAGCAAC
Statistics
Matches: 44, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
27 6 0.14
28 9 0.20
29 29 0.66
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.31
Consensus pattern (29 bp):
ACAATAAAAATATAATCATAGTAATAAAT
Found at i:213199 original size:13 final size:14
Alignment explanation
Indices: 213181--213221 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
213171 AAATTACATG
213181 AAAATAAATAACAA-
1 AAAATAAATAA-AAC
213195 AAATATAAAT-AAAC
1 AAA-ATAAATAAAAC
213209 AAAATAAATAAAA
1 AAAATAAATAAAA
213222 ATTAAATGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
13 8 0.33
14 10 0.42
15 6 0.25
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (14 bp):
AAAATAAATAAAAC
Found at i:213217 original size:19 final size:19
Alignment explanation
Indices: 213181--213223 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
213171 AAATTACATG
*
213181 AAAATAAATAACAAAAATA
1 AAAATAAACAACAAAAATA
*
213200 TAAATAAACAA-AATAAATA
1 AAAATAAACAACAA-AAATA
213219 AAAAT
1 AAAAT
213224 TAAATGCTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 2 0.10
19 18 0.90
ACGTcount: A:0.77, C:0.05, G:0.00, T:0.19
Consensus pattern (19 bp):
AAAATAAACAACAAAAATA
Found at i:213228 original size:15 final size:13
Alignment explanation
Indices: 213181--213222 Score: 57
Period size: 13 Copynumber: 3.1 Consensus size: 13
213171 AAATTACATG
213181 AAAATAAATAACAA
1 AAAATAAATAA-AA
*
213195 AAATATAAATAAAC
1 AAA-ATAAATAAAA
213209 AAAATAAATAAAA
1 AAAATAAATAAAA
213222 A
1 A
213223 TTAAATGCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 10 0.40
14 7 0.28
15 8 0.32
ACGTcount: A:0.79, C:0.05, G:0.00, T:0.17
Consensus pattern (13 bp):
AAAATAAATAAAA
Found at i:213359 original size:20 final size:20
Alignment explanation
Indices: 213323--213360 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
213313 AAAATCAATA
*
213323 AATTAAATATCAGAATAAAC
1 AATTAAATATAAGAATAAAC
*
213343 AATTAAATATAATAATAA
1 AATTAAATATAAGAATAA
213361 TAAAAAAGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.63, C:0.05, G:0.03, T:0.29
Consensus pattern (20 bp):
AATTAAATATAAGAATAAAC
Found at i:217790 original size:21 final size:21
Alignment explanation
Indices: 217743--217795 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
217733 TCCCCAAACA
*
217743 ACATGTCAAAACTCACTAACC
1 ACATGTCAAAACGCACTAACC
* *
217764 AGATGTCAAAACGCA-TCAGCC
1 ACATGTCAAAACGCACT-AACC
217785 ACATGTTCAAA
1 ACATG-TCAAA
217796 CACATCTACT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 1 0.04
21 20 0.77
22 5 0.19
ACGTcount: A:0.42, C:0.28, G:0.11, T:0.19
Consensus pattern (21 bp):
ACATGTCAAAACGCACTAACC
Found at i:217830 original size:21 final size:21
Alignment explanation
Indices: 217767--217833 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 21
217757 ACTAACCAGA
* * *
217767 TGTCAAAACGCATCAGCCACA
1 TGTCAAAACACATCAGTCACG
*
217788 TGTTC-AAACACATCTACT-ACG
1 TG-TCAAAACACATC-AGTCACG
*
217809 TGTCAAAACTCATCAGTCACG
1 TGTCAAAACACATCAGTCACG
217830 TGTC
1 TGTC
217834 CAACTTTAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
20 4 0.11
21 29 0.81
22 3 0.08
ACGTcount: A:0.33, C:0.30, G:0.13, T:0.24
Consensus pattern (21 bp):
TGTCAAAACACATCAGTCACG
Done.