genome.fa.s11066.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011066.1 Kokia drynarioides strain JFW-HI SEQ_126038, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  248974

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
569--613	3	15.0	3	100	0	90	33	0	0	66	0.92
3255--3300	21	2.2	21	88	3	67	21	15	10	52	1.73
3655--3703	19	2.6	18	75	9	53	32	0	0	67	0.91
9881--9927	23	2.0	23	91	0	76	61	8	21	8	1.51
18961--19040	23	3.4	23	84	3	97	13	18	20	47	1.82
19532--19671	69	2.0	66	84	10	174	45	20	20	12	1.84
19581--19672	23	4.0	23	88	0	130	44	22	19	13	1.85
24899--24932	16	2.1	17	88	5	52	41	0	17	41	1.50
25720--25780	22	2.7	23	73	16	65	21	27	16	34	1.95
26041--26124	42	2.0	42	95	0	150	21	23	16	38	1.93
26928--26970	19	2.3	19	100	0	86	41	25	16	16	1.88
33200--33352	41	3.5	41	65	17	108	45	4	3	45	1.42
33201--33386	93	2.0	93	96	0	345	46	5	3	44	1.44
35939--35977	20	1.9	21	89	5	62	28	0	7	64	1.21
36289--36332	23	1.9	23	85	0	61	52	0	0	47	1.00
37699--37741	22	2.0	22	90	0	68	18	6	11	62	1.50
45227--45262	15	2.2	18	85	14	51	41	0	0	58	0.98
67758--67847	44	2.0	44	100	0	180	28	21	13	36	1.91
71665--71722	23	2.5	24	80	2	73	68	20	3	6	1.27
71781--71815	17	2.1	17	94	0	61	74	11	2	11	1.18
72111--72192	42	2.0	42	83	7	105	39	4	0	56	1.21
72969--73023	19	2.9	19	83	5	67	32	1	1	63	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72969--73023	10	5.9	9	78	14	58	32	1	1	63	1.15
72959--73019	28	2.1	28	82	8	70	32	1	3	62	1.21
73008--73050	16	2.5	18	77	14	54	48	0	2	48	1.14
73363--73396	17	2.1	17	88	5	52	47	0	0	52	1.00
80323--80347	13	1.9	13	100	0	50	64	12	0	24	1.27
80336--80413	23	3.3	23	68	20	61	65	7	1	25	1.27
80322--80413	12	7.6	12	69	18	57	65	8	1	25	1.28
80608--80640	11	2.7	13	81	18	52	15	12	0	72	1.12
80612--80638	11	2.5	11	100	0	54	14	14	0	70	1.17
80953--80994	8	5.4	8	85	5	59	83	0	0	16	0.65
80953--80997	15	3.1	15	81	12	58	80	0	0	20	0.72
89814--89847	13	2.6	13	85	0	50	58	11	0	29	1.33
92041--92395	177	2.0	177	96	0	647	36	9	14	39	1.79
96062--96119	16	3.6	15	84	11	71	44	24	3	27	1.69
98052--98109	24	2.5	24	77	5	66	51	6	18	22	1.70
103740--103852	41	2.8	39	80	9	127	34	26	12	26	1.92
106786--106826	11	3.7	11	83	0	55	63	4	2	29	1.28
107885--108039	30	5.2	30	80	4	145	34	18	3	43	1.66
107885--108098	60	3.6	59	79	5	171	34	19	3	42	1.68
107924--108122	30	6.8	29	79	9	163	35	22	3	39	1.69
107885--108118	89	2.6	89	82	3	254	34	20	3	41	1.70
123942--123970	4	7.5	4	92	7	51	79	20	0	0	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132284--132329	23	1.9	23	86	8	65	56	6	2	34	1.37
133248--133380	66	2.0	66	98	0	257	40	24	5	30	1.77
138631--138735	40	2.6	41	80	4	115	33	28	14	23	1.94
141635--141730	41	2.3	41	92	0	156	36	27	5	31	1.79
155068--155119	21	2.5	21	81	6	61	28	11	28	30	1.92
161481--161513	10	3.0	11	86	13	50	69	3	0	27	1.03
166682--166741	31	2.0	30	83	9	77	41	0	1	56	1.09
166702--166748	16	3.0	15	80	17	51	42	0	0	57	0.98
171309--171400	29	3.1	30	78	17	95	41	6	14	38	1.71
172920--173040	58	2.1	58	98	0	233	28	28	9	33	1.88
184132--184159	2	14.0	2	100	0	56	50	0	0	50	1.00
190534--190603	29	2.4	29	79	9	70	35	0	2	61	1.11
190743--190776	2	17.0	2	100	0	68	50	0	0	50	1.00
193857--193890	9	3.8	9	84	0	50	55	2	0	41	1.15
198841--198894	16	3.4	15	80	12	63	33	24	3	38	1.73
198851--198896	16	2.9	16	83	0	65	32	26	2	39	1.68
199507--199572	20	3.3	20	72	21	59	50	0	1	48	1.10
199516--199574	28	2.1	28	90	6	93	52	0	0	47	1.00
206411--206443	2	16.5	2	93	0	57	0	48	3	48	1.17
213594--213647	21	2.5	21	85	8	65	35	0	0	64	0.94
221274--221326	9	6.6	9	72	24	55	52	0	0	47	1.00
222305--222346	20	2.0	22	90	9	70	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
227219--227313	50	2.0	49	87	8	142	31	4	6	57	1.43

Tables:   1

The End!