Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011067.1 Kokia drynarioides strain JFW-HI SEQ_126039, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9345
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:610 original size:23 final size:22

Alignment explanation


    Indices: 579--622  Score: 61
    Period size: 23  Copynumber: 2.0  Consensus size: 22

        569 AAAGAAATAA

                       *          
        579 AATTAACCCAATTTAATTAATT
          1 AATTAACCCAAATTAATTAATT

                            *     
        601 AATTCAACCCAAATTATTTAAT
          1 AATT-AACCCAAATTAATTAAT

        623 GAAATATTTT


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  22    4  0.21
  23   15  0.79

ACGTcount: A:0.45, C:0.16, G:0.00, T:0.39


Consensus pattern (22 bp):   
AATTAACCCAAATTAATTAATT
Done.