Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01001107.1 Kokia drynarioides strain JFW-HI SEQ_112387, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135090
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.35
Warning! 11 characters in sequence are not A, C, G, or T
Found at i:7 original size:2 final size:2
Alignment explanation
Indices: 1--29 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
30 GAGATGTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:15362 original size:16 final size:16
Alignment explanation
Indices: 15337--15367 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15327 TAATAGTGCG
*
15337 AATTATTTAAAAATTA
1 AATTAATTAAAAATTA
15353 AATTAATTAAAAATT
1 AATTAATTAAAAATT
15368 TTAGTGTATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
AATTAATTAAAAATTA
Found at i:16104 original size:29 final size:31
Alignment explanation
Indices: 16072--16133 Score: 83
Period size: 29 Copynumber: 2.1 Consensus size: 31
16062 TTGATTTAAT
* * *
16072 GTGCAATTGTATACATG-AACTTTAATT-TG
1 GTGCAATTATACACATGAAACTCTAATTGTG
16101 GTGCAATTATACACATGAAACTCTAATTGTG
1 GTGCAATTATACACATGAAACTCTAATTGTG
16132 GT
1 GT
16134 TCAAACGTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 15 0.54
30 9 0.32
31 4 0.14
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (31 bp):
GTGCAATTATACACATGAAACTCTAATTGTG
Found at i:17197 original size:5 final size:5
Alignment explanation
Indices: 17187--17217 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
17177 AAAAAATCTG
17187 ATTTT ATTTT ATTTT ATTTT ATTATT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATT-TT ATTTT
17218 GAGTGGTGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (5 bp):
ATTTT
Found at i:19141 original size:13 final size:13
Alignment explanation
Indices: 19123--19152 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
19113 TTTGTTTAGG
19123 TTTTTTTGTA-GT
1 TTTTTTTGTATGT
19135 TTTTTTTGTATGT
1 TTTTTTTGTATGT
19148 TTTTT
1 TTTTT
19153 ATTTTTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.59
13 7 0.41
ACGTcount: A:0.07, C:0.00, G:0.13, T:0.80
Consensus pattern (13 bp):
TTTTTTTGTATGT
Found at i:21859 original size:29 final size:29
Alignment explanation
Indices: 21827--22005 Score: 168
Period size: 29 Copynumber: 6.1 Consensus size: 29
21817 TTTTGAAAAG
*
21827 TTCGTGGGT-AAAATGGGATTTTTGGAAGT
1 TTCG-GGGTCAAAATGGAATTTTTGGAAGT
**
21856 TTCGAAGTCGAAAATGGAATTTTTGGAAG-
1 TTCGGGGTC-AAAATGGAATTTTTGGAAGT
* **
21885 TTCGAGGGTAAAAATATAATTTTTGGAAGT
1 TTCG-GGGTCAAAATGGAATTTTTGGAAGT
** **
21915 TTTAGGGTTGAAATGGAATTTTTGGAAG-
1 TTCGGGGTCAAAATGGAATTTTTGGAAGT
*
21943 TTCGGGGGT-AAAAGTGGAATTTTTGGAAAT
1 TTC-GGGGTCAAAA-TGGAATTTTTGGAAGT
21973 TTCGGGGTCGAAAATGGAATTTTTGGATAGT
1 TTCGGGGTC-AAAATGGAATTTTTGGA-AGT
22004 TT
1 TT
22006 AGGGACCTTC
Statistics
Matches: 121, Mismatches: 19, Indels: 18
0.77 0.12 0.11
Matches are distributed among these distances:
28 7 0.06
29 68 0.56
30 38 0.31
31 8 0.07
ACGTcount: A:0.30, C:0.04, G:0.30, T:0.36
Consensus pattern (29 bp):
TTCGGGGTCAAAATGGAATTTTTGGAAGT
Found at i:21929 original size:58 final size:59
Alignment explanation
Indices: 21824--22004 Score: 206
Period size: 58 Copynumber: 3.1 Consensus size: 59
21814 AGATTTTGAA
* * * * *
21824 AAGTTCGTGGGT-AAAATGGGATTTTTGGAAGTTTC-GAAGTCGAAAATGGAATTTTTGG
1 AAGTTCGAGGGTAAAAATAGAATTTTTGGAAATTTCAG-GGTCGAAAATGGAATTTTTGG
* * * *
21882 AAGTTCGAGGGTAAAAATATAATTTTTGGAAGTTTTAGGGTTG-AAATGGAATTTTTGG
1 AAGTTCGAGGGTAAAAATAGAATTTTTGGAAATTTCAGGGTCGAAAATGGAATTTTTGG
* * * *
21940 AAGTTCGGGGGTAAAAGTGGAATTTTTGGAAATTTCGGGGTCGAAAATGGAATTTTTGG
1 AAGTTCGAGGGTAAAAATAGAATTTTTGGAAATTTCAGGGTCGAAAATGGAATTTTTGG
21999 ATAGTT
1 A-AGTT
22005 TAGGGACCTT
Statistics
Matches: 104, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
58 61 0.59
59 38 0.37
60 5 0.05
ACGTcount: A:0.30, C:0.04, G:0.30, T:0.35
Consensus pattern (59 bp):
AAGTTCGAGGGTAAAAATAGAATTTTTGGAAATTTCAGGGTCGAAAATGGAATTTTTGG
Found at i:23812 original size:17 final size:17
Alignment explanation
Indices: 23773--23844 Score: 81
Period size: 17 Copynumber: 4.1 Consensus size: 17
23763 GTAATGGGAC
*
23773 TTTAAATTTTGAAATTAAA
1 TTTAAA-TTT-AAAATAAA
* *
23792 TTTAAATTTAAGATTAA
1 TTTAAATTTAAAATAAA
23809 TTTAAATTTAAAATAAA
1 TTTAAATTTAAAATAAA
* *
23826 TCTAAATTAAAAATAAA
1 TTTAAATTTAAAATAAA
23843 TT
1 TT
23845 AAAAAAAGGG
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
17 36 0.80
18 3 0.07
19 6 0.13
ACGTcount: A:0.53, C:0.01, G:0.03, T:0.43
Consensus pattern (17 bp):
TTTAAATTTAAAATAAA
Found at i:23836 original size:11 final size:11
Alignment explanation
Indices: 23774--23847 Score: 60
Period size: 11 Copynumber: 6.5 Consensus size: 11
23764 TAATGGGACT
23774 TTAAATTTTGAAA
1 TTAAA-TTT-AAA
23787 TTAAATTTAAA
1 TTAAATTTAAA
*
23798 TTTAAGA-TTAAT
1 -TTAA-ATTTAAA
23810 TTAAATTTAAA
1 TTAAATTTAAA
* *
23821 ATAAATCTAAA
1 TTAAATTTAAA
**
23832 TTAAAAATAAA
1 TTAAATTTAAA
23843 TTAAA
1 TTAAA
23848 AAAAGGGGGC
Statistics
Matches: 51, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
10 1 0.02
11 33 0.65
12 11 0.22
13 6 0.12
ACGTcount: A:0.55, C:0.01, G:0.03, T:0.41
Consensus pattern (11 bp):
TTAAATTTAAA
Found at i:25364 original size:36 final size:36
Alignment explanation
Indices: 25317--25390 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
25307 TTCGAGAAAC
25317 GTTCCCACTAGGCCAAATTAGCTAGCTCTCTATCTA
1 GTTCCCACTAGGCCAAATTAGCTAGCTCTCTATCTA
25353 GTTCCCACTAGGCCAAATTAGCTAGCTCTCTATCTA
1 GTTCCCACTAGGCCAAATTAGCTAGCTCTCTATCTA
25389 GT
1 GT
25391 CTTTCTCTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.24, C:0.30, G:0.15, T:0.31
Consensus pattern (36 bp):
GTTCCCACTAGGCCAAATTAGCTAGCTCTCTATCTA
Found at i:42576 original size:17 final size:17
Alignment explanation
Indices: 42534--42568 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
42524 TATATATAAT
42534 ACTACTATAATGTAAAC
1 ACTACTATAATGTAAAC
* *
42551 ACTAATATAATGTTAAC
1 ACTACTATAATGTAAAC
42568 A
1 A
42569 TGACTATATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.49, C:0.14, G:0.06, T:0.31
Consensus pattern (17 bp):
ACTACTATAATGTAAAC
Found at i:49683 original size:11 final size:11
Alignment explanation
Indices: 49667--49691 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
49657 TGGTACATAC
49667 AAAAAAAAGAA
1 AAAAAAAAGAA
49678 AAAAAAAAGAA
1 AAAAAAAAGAA
49689 AAA
1 AAA
49692 CCCCAAAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAAAAGAA
Found at i:50971 original size:13 final size:13
Alignment explanation
Indices: 50942--50983 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
50932 TTTAGTTGAG
*
50942 AATTTAATTTAAAT
1 AATTTAA-TTAATT
50956 AATTTAATTAATT
1 AATTTAATTAATT
*
50969 AATTTAATTGATT
1 AATTTAATTAATT
50982 AA
1 AA
50984 ATAAATAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
13 19 0.73
14 7 0.27
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (13 bp):
AATTTAATTAATT
Found at i:52752 original size:21 final size:22
Alignment explanation
Indices: 52723--52765 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
52713 TTACATTTTC
**
52723 TAAAGTTAAAAGTCAAAATTAT
1 TAAAGTTAAAAGGAAAAATTAT
52745 TAAA-TTAAAAGGAAAAATTAT
1 TAAAGTTAAAAGGAAAAATTAT
52766 GTCGTTTTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.58, C:0.02, G:0.09, T:0.30
Consensus pattern (22 bp):
TAAAGTTAAAAGGAAAAATTAT
Found at i:53139 original size:21 final size:21
Alignment explanation
Indices: 53115--53170 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
53105 CTTGAGATAG
*
53115 TTCTACCGATACTAGTGTAAC
1 TTCTACCGATACTAGTCTAAC
* * *
53136 TTCTACCGAAACAAGTCTTAC
1 TTCTACCGATACTAGTCTAAC
53157 TTCTACCGATACTA
1 TTCTACCGATACTA
53171 AAACTCCAGA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.30, C:0.27, G:0.11, T:0.32
Consensus pattern (21 bp):
TTCTACCGATACTAGTCTAAC
Found at i:62231 original size:46 final size:46
Alignment explanation
Indices: 62178--62270 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
62168 ATTTTGTAAG
62178 GCTTTTTATTCACCCAAAGAAAAACCCGTTACTCTTATTGTAAAAA
1 GCTTTTTATTCACCCAAAGAAAAACCCGTTACTCTTATTGTAAAAA
62224 GCTTTTTATTCACCCAAAGAAAAACCCGTTACTCTTATTGTAAAAA
1 GCTTTTTATTCACCCAAAGAAAAACCCGTTACTCTTATTGTAAAAA
62270 G
1 G
62271 AACCCATAAC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.32
Consensus pattern (46 bp):
GCTTTTTATTCACCCAAAGAAAAACCCGTTACTCTTATTGTAAAAA
Found at i:68242 original size:36 final size:36
Alignment explanation
Indices: 68193--68280 Score: 104
Period size: 36 Copynumber: 2.4 Consensus size: 36
68183 CAAACACAAG
** *
68193 TACAGATGCAGATACAAATACAAACGTAAATACATA
1 TACAGATATAGATACAAATACAAACATAAATACATA
* * * **
68229 TACATATATAGATATAAATACAAATATAAATGTATA
1 TACAGATATAGATACAAATACAAACATAAATACATA
68265 TACAGATATAGATACA
1 TACAGATATAGATACA
68281 GTTGCAGATA
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
36 42 1.00
ACGTcount: A:0.53, C:0.11, G:0.09, T:0.26
Consensus pattern (36 bp):
TACAGATATAGATACAAATACAAACATAAATACATA
Found at i:68249 original size:18 final size:18
Alignment explanation
Indices: 68228--68278 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
68218 GTAAATACAT
*
68228 ATACATATATAGATATAA
1 ATACAAATATAGATATAA
* * *
68246 ATACAAATATAAATGTAT
1 ATACAAATATAGATATAA
*
68264 ATACAGATATAGATA
1 ATACAAATATAGATA
68279 CAGTTGCAGA
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.55, C:0.06, G:0.08, T:0.31
Consensus pattern (18 bp):
ATACAAATATAGATATAA
Found at i:75424 original size:19 final size:19
Alignment explanation
Indices: 75400--75439 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
75390 ATATAATTAT
75400 ATGTACAGGATAAGTACAA
1 ATGTACAGGATAAGTACAA
75419 ATGTACAGGATAAGTACAA
1 ATGTACAGGATAAGTACAA
75438 AT
1 AT
75440 ATATGTTGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.47, C:0.10, G:0.20, T:0.23
Consensus pattern (19 bp):
ATGTACAGGATAAGTACAA
Found at i:75609 original size:90 final size:90
Alignment explanation
Indices: 75436--75610 Score: 199
Period size: 90 Copynumber: 1.9 Consensus size: 90
75426 GGATAAGTAC
** * * ** *
75436 AAATATATGTTGGATCAACTTACAATGTAAAATTTAATTAGTACAATCTACAATTGATTAAAAAG
1 AAATATATGTCCGATCAAATTACAATGTAAAATTCAATTAGTACAATCTACAACGGACTAAAAAG
* * *
75501 CTGACAAAATCGATATAAAATGTAT
66 CTAACAAAATCAACATAAAATGTAT
* * *
75526 AAATATATGTCCGATCAAATTACAATGTAAAATTCAATTAGTACAATGTATAACGGACTAAGAA-
1 AAATATATGTCCGATCAAATTACAATGTAAAATTCAATTAGTACAATCTACAACGGACTAAAAAG
* *
75590 TTCAACAATATCAACATAAAA
66 CT-AACAAAATCAACATAAAA
75611 CATATGCATA
Statistics
Matches: 69, Mismatches: 15, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
89 1 0.01
90 68 0.99
ACGTcount: A:0.48, C:0.12, G:0.10, T:0.30
Consensus pattern (90 bp):
AAATATATGTCCGATCAAATTACAATGTAAAATTCAATTAGTACAATCTACAACGGACTAAAAAG
CTAACAAAATCAACATAAAATGTAT
Found at i:77345 original size:21 final size:21
Alignment explanation
Indices: 77319--77372 Score: 99
Period size: 21 Copynumber: 2.6 Consensus size: 21
77309 CTGGAGTTTA
77319 TTGTATCGGTAGAAGTATGAG
1 TTGTATCGGTAGAAGTATGAG
*
77340 TTGTATCGGTAGAAGTATGGG
1 TTGTATCGGTAGAAGTATGAG
77361 TTGTATCGGTAG
1 TTGTATCGGTAG
77373 TACCTGTACT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.24, C:0.06, G:0.35, T:0.35
Consensus pattern (21 bp):
TTGTATCGGTAGAAGTATGAG
Found at i:78997 original size:31 final size:30
Alignment explanation
Indices: 78933--78996 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
78923 AGTTTATATC
* * *
78933 TTTATTATTTTTATAGGGTTAAATTAAATT
1 TTTATTATTTTTAGAGGGTCAAATGAAATT
78963 TTTATTATTTTTGAGAGGGTCAAAGTGAAATT
1 TTTATTATTTTT-AGAGGGTCAAA-TGAAATT
78995 TT
1 TT
78997 ACCATTACTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 12 0.41
31 9 0.31
32 8 0.28
ACGTcount: A:0.31, C:0.02, G:0.16, T:0.52
Consensus pattern (30 bp):
TTTATTATTTTTAGAGGGTCAAATGAAATT
Found at i:86372 original size:18 final size:20
Alignment explanation
Indices: 86351--86398 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 20
86341 CGATTACACG
*
86351 GATGATGAA-GGA-GATGAT
1 GATGATGAAGGGAGGAGGAT
86369 GATGATGAAGGGAGGGAGGAT
1 GATGATGAAGGGA-GGAGGAT
86390 GATGATGAA
1 GATGATGAA
86399 AATGGGGATT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 9 0.35
19 3 0.12
21 14 0.54
ACGTcount: A:0.38, C:0.00, G:0.44, T:0.19
Consensus pattern (20 bp):
GATGATGAAGGGAGGAGGAT
Found at i:114879 original size:31 final size:31
Alignment explanation
Indices: 114839--114973 Score: 117
Period size: 31 Copynumber: 4.3 Consensus size: 31
114829 TTTTTAAAAA
*
114839 AATTAAATATAATAATAAATAAGATTTAAAT
1 AATTTAATATAATAATAAATAAGATTTAAAT
* * *
114870 AATTTAATATAATGATAAATGAGGTTTAAAT
1 AATTTAATATAATAATAAATAAGATTTAAAT
* * * * *
114901 AATTGAATATAATGATACATAAAATATTTTAAT
1 AATTTAATATAATAATA-A-ATAAGATTTAAAT
* * * *
114934 ATTTTAATATAATAATATATAAAATATAAATT
1 AATTTAATATAATAATAAATAAGATTTAAA-T
*
114966 AATCTAAT
1 AATTTAAT
114974 TTTTATATAT
Statistics
Matches: 81, Mismatches: 20, Indels: 5
0.76 0.19 0.05
Matches are distributed among these distances:
31 51 0.63
32 8 0.10
33 22 0.27
ACGTcount: A:0.54, C:0.01, G:0.05, T:0.39
Consensus pattern (31 bp):
AATTTAATATAATAATAAATAAGATTTAAAT
Found at i:114961 original size:17 final size:17
Alignment explanation
Indices: 114906--114962 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
114896 TAAATAATTG
* *
114906 AATATAATGATACATAA
1 AATATAATAATATATAA
** **
114923 AATATTTTAATAT-TTT
1 AATATAATAATATATAA
114939 AATATAATAATATATAA
1 AATATAATAATATATAA
114956 AATATAA
1 AATATAA
114963 ATTAATCTAA
Statistics
Matches: 29, Mismatches: 10, Indels: 2
0.71 0.24 0.05
Matches are distributed among these distances:
16 12 0.41
17 17 0.59
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (17 bp):
AATATAATAATATATAA
Found at i:119973 original size:42 final size:42
Alignment explanation
Indices: 119923--120779 Score: 354
Period size: 38 Copynumber: 22.0 Consensus size: 42
119913 TAAAAGATTG
*
119923 GATG-CTTCAATCTGCCCCATGATCGGGGTAAGATATTGGAT
1 GATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGAT
* *
119964 GATGTCTTCAATCTACCTCATGATCGGGGTAAGAGATTGGAT
1 GATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGAT
* * * * * *
120006 -A--ACTTCAGTCTGCTCCATGGTTGAGGTAAGAGATTGGAT
1 GATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGAT
** * * *
120045 GATGTCTTCAATCTGCTTCATGGTCAGGGAAAGAGATT-GA-
1 GATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGAT
* * **** ** * * **
120085 -AAGACTTCAATCTGAAAGA-GAT--TTG-ACGA-CTTCAAT
1 GATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGAT
*
120121 -CTGTCTT--A---------TGATCGGGGTAAGAGATTGGAT
1 GATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGAT
* * *
120151 AATATCTTCAATCTGCCCCATGATCAGGGTAAGAGATTGG-T
1 GATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGAT
* *** *
120192 -ATGTCTTTAATCTGCCCTC-TGATTAAGGTAAAAGATT--A-
1 GATGTCTTCAATCTGCCC-CATGATCGGGGTAAGAGATTGGAT
* * * * *
120230 GATGT-TTTAGTCTGCCCCATGATTGGGGTAAGACACTGG-T
1 GATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGAT
* ** * *
120270 G-TGTCTTCAATCAGCCCTC-TGATTAGGGTAAAAGACT--A-
1 GATGTCTTCAATCTGCCC-CATGATCGGGGTAAGAGATTGGAT
*
120308 GATG-CTTCAATCTGCCCCATGATTGGGGTAAGAGATTGG-T
1 GATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGAT
* * **
120348 G-TGTCTTCAATCTACCTTC-TGATTAGGGTAA-AGATT--A-
1 GATGTCTTCAATCTGCC-CCATGATCGGGGTAAGAGATTGGAT
*
120385 GATG-CTTCAATCTGCCCCATGATCGGGGTAAAAGATTGGAT
1 GATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGAT
* * *
120426 GA----TTCAATTTGTCTCATGATCGGGGTAAGAGATT-GAT
1 GATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGAT
* * *
120463 G-TGTCTTCAATCTGCCCCTCTTGACTAGGGGTAAAAGATT-GA-
1 GATGTCTTCAATCTG-CCC-CATGA-TCGGGGTAAGAGATTGGAT
* *
120505 -ATG-CTTCAATCTGCCTCATGATCGGGGTAAGAGATAGG-T
1 GATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGAT
* * ** ** *
120544 G-TGTTTTTAATCTGCCCTTTGATTAGGGTAAAAGATT-G--
1 GATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGAT
* * * *
120582 GATG-CTGCAATCTGTCCCATGATCGAGATAAGAGATT-G-T
1 GATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGAT
* ** *
120621 CATGTCTTCAATCTGCCCTC-TGATTAGGGTAAAAGATT-G--
1 GATGTCTTCAATCTGCCC-CATGATCGGGGTAAGAGATTGGAT
* * *
120660 GATG-CTTCAATTTGCCCCGTGATCGGAGTAAGAGATTGG-T
1 GATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGAT
* ** * *
120700 G-TGTCTTCAATTTG-CCCACTGATTAGTGTAAAAGATT-G--
1 GATGTCTTCAATCTGCCCCA-TGATCGGGGTAAGAGATTGGAT
* *
120738 GATG-CTTCAATCTGCCCCATGATCGAGGTATGAGATTGGAT
1 GATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGAT
120779 G
1 G
120780 GTAGCTTCGT
Statistics
Matches: 612, Mismatches: 131, Indels: 146
0.69 0.15 0.16
Matches are distributed among these distances:
26 3 0.00
28 1 0.00
29 3 0.00
30 4 0.01
31 5 0.01
33 1 0.00
34 3 0.00
35 4 0.01
36 6 0.01
37 29 0.05
38 173 0.28
39 89 0.15
40 164 0.27
41 26 0.04
42 86 0.14
43 15 0.02
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (42 bp):
GATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGAT
Found at i:120043 original size:81 final size:80
Alignment explanation
Indices: 119909--120539 Score: 273
Period size: 78 Copynumber: 8.2 Consensus size: 80
119899 TCTTGATTTA
* * * *
119909 GGGGTAAAAGATTGGATGCTTCAATCTGCCCCATGATCGGGGTAAGATATTGGATGATGTCTTCA
1 GGGGTAAGAGATTGGATACTTCAATCTGCCCCATGATCGAGGTAAGAGATTGGATGATGTCTTCA
119974 ATCTACCTCATGATC
66 ATCTACCTCATGATC
* * * *
119989 GGGGTAAGAGATTGGATAACTTCAGTCTGCTCCATGGTTGAGGTAAGAGATTGGATGATGTCTTC
1 GGGGTAAGAGATTGGAT-ACTTCAATCTGCCCCATGATCGAGGTAAGAGATTGGATGATGTCTTC
* * *
120054 AATCTGCTTCATGGTC
65 AATCTACCTCATGATC
* * * * * * ** *
120070 AGGGAAAGAGATTGAAAGACTTCAATCTG----A--A-AGAGATTTGACGACTT-CA--A--TCT
1 GGGGTAAGAGATTG-GATACTTCAATCTGCCCCATGATCGAGGTAAGA-GA-TTGGATGATGTCT
120123 GTC--T-TA-----TGATC
63 -TCAATCTACCTCATGATC
120134 GGGGTAAGAGATTGGATAATATCTTCAATCTGCCCCATGATC-AGGGTAAGAGATTGG-T-ATGT
1 GGGGTAAGAGATTGG---ATA-CTTCAATCTGCCCCATGATCGA-GGTAAGAGATTGGATGATGT
* * *
120196 CTTTAATCTGCCCTC-TGATT
61 CTTCAATCT-ACCTCATGATC
** * * ** * * * * * *
120216 AAGGTAAAAGATTAGATGTTTTAGTCTGCCCCATGATTGGGGTAAGACACTGG-TG-TGTCTTCA
1 GGGGTAAGAGATTGGATACTTCAATCTGCCCCATGATCGAGGTAAGAGATTGGATGATGTCTTCA
*
120279 ATC-AGCCCTC-TGATT
66 ATCTA--CCTCATGATC
* * * * * * *
120294 AGGGTAAAAGACTAGATGCTTCAATCTGCCCCATGATTGGGGTAAGAGATTGG-TG-TGTCTTCA
1 GGGGTAAGAGATTGGATACTTCAATCTGCCCCATGATCGAGGTAAGAGATTGGATGATGTCTTCA
*
120357 ATCTACCTTC-TGATT
66 ATCTACC-TCATGATC
* * * * *
120372 AGGGTAA-AGATTAGATGCTTCAATCTGCCCCATGATCGGGGTAAAAGATTGGATGA----TTCA
1 GGGGTAAGAGATTGGATACTTCAATCTGCCCCATGATCGAGGTAAGAGATTGGATGATGTCTTCA
* **
120432 ATTTGTCTCATGATC
66 ATCTACCTCATGATC
* * * * *
120447 GGGGTAAGAGATT-GATGTGTCTTCAATCTGCCCCTCTTGACTAGGGGTAAAAGATT-GA--ATG
1 GGGGTAAGAGATTGGA--T-ACTTCAATCTG-CCC-CATGA-TCGAGGTAAGAGATTGGATGATG
*
120508 -CTTCAATCTGCCTCATGATC
60 TCTTCAATCTACCTCATGATC
120528 GGGGTAAGAGAT
1 GGGGTAAGAGAT
120540 AGGTGTGTTT
Statistics
Matches: 433, Mismatches: 70, Indels: 95
0.72 0.12 0.16
Matches are distributed among these distances:
64 16 0.04
66 2 0.00
67 10 0.02
69 1 0.00
70 1 0.00
71 4 0.01
72 4 0.01
73 6 0.01
74 13 0.03
75 26 0.06
76 8 0.02
77 47 0.11
78 133 0.31
79 6 0.01
80 22 0.05
81 118 0.27
82 16 0.04
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (80 bp):
GGGGTAAGAGATTGGATACTTCAATCTGCCCCATGATCGAGGTAAGAGATTGGATGATGTCTTCA
ATCTACCTCATGATC
Found at i:120107 original size:25 final size:25
Alignment explanation
Indices: 120073--120123 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
120063 CATGGTCAGG
120073 GAAAGAGA-TTGAAAGACTTCAATCT
1 GAAAGAGATTTG-AAGACTTCAATCT
*
120098 GAAAGAGATTTGACGACTTCAATCT
1 GAAAGAGATTTGAAGACTTCAATCT
120123 G
1 G
120124 TCTTATGATC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 21 0.88
26 3 0.12
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.25
Consensus pattern (25 bp):
GAAAGAGATTTGAAGACTTCAATCT
Found at i:120259 original size:78 final size:78
Alignment explanation
Indices: 120156--120423 Score: 385
Period size: 78 Copynumber: 3.4 Consensus size: 78
120146 TGGATAATAT
* * * *
120156 CTTCAATCTGCCCCATGATCAGGGTAAGAGATTGGTATGTCTTTAATCTGCCCTCTGATTAAGGT
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATCTGCCCTCTGATTAGGGT
120221 AAAAGATTAGATG
66 AAAAGATTAGATG
* * * * * * *
120234 TTTTAGTCTGCCCCATGATTGGGGTAAGACACTGGTGTGTCTTCAATCAGCCCTCTGATTAGGGT
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATCTGCCCTCTGATTAGGGT
*
120299 AAAAGACTAGATG
66 AAAAGATTAGATG
* * *
120312 CTTCAATCTGCCCCATGATTGGGGTAAGAGATTGGTGTGTCTTCAATCTACCTTCTGATTAGGGT
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATCTGCCCTCTGATTAGGGT
120377 -AAAGATTAGATG
66 AAAAGATTAGATG
*
120389 CTTCAATCTGCCCCATGATCGGGGTAAAAGATTGG
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGG
120424 ATGATTCAAT
Statistics
Matches: 167, Mismatches: 23, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
77 44 0.26
78 123 0.74
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (78 bp):
CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATCTGCCCTCTGATTAGGGT
AAAAGATTAGATG
Found at i:120519 original size:196 final size:193
Alignment explanation
Indices: 120114--120618 Score: 541
Period size: 196 Copynumber: 2.6 Consensus size: 193
120104 GATTTGACGA
* * * * * * *
120114 CTTCAATCTGTCTTATGATCGGGGTAAGAGATTGGATAATATCTTCAATCTGCC-CCATGATCAG
1 CTTCAATCTGCCTCATGATCGGGGTAAGAGATTGG-T-GTGTCTTCAATCTACCTTC-TGATTAG
* ** * * *
120178 GGTAAGAGATTGGTATGTCTTTAATCTGCCCTC-TGATTAAGGTAAAAGATTAGATGTTTTAGTC
63 GGTAA-AGATTGG-ATG-CTTCAATCTGCCC-CATGATCGAGGTAAAAGATTAGATGATTCAATC
* * *
120242 TGCCCCATGATTGGGGTAAGACACTGGTGTGTCTTCAATCAGCCCTCTGATTAGGGTAAAAGACT
124 TGCCCCATGATCGGGGTAAGACACTGATGTGTCTTCAATCAGCCCTCTGACTAGGGTAAAAGACT
120307 AGATG
189 AGATG
* *
120312 CTTCAATCTGCCCCATGATTGGGGTAAGAGATTGGTGTGTCTTCAATCTACCTTCTGATTAGGGT
1 CTTCAATCTGCCTCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATCTACCTTCTGATTAGGGT
* * * * * *
120377 AAAGATTAGATGCTTCAATCTGCCCCATGATCGGGGTAAAAGATTGGATGATTCAATTTGTCTCA
66 AAAGATTGGATGCTTCAATCTGCCCCATGATCGAGGTAAAAGATTAGATGATTCAATCTGCCCCA
* * * *
120442 TGATCGGGGTAAGAGATTGATGTGTCTTCAATCTGCCCCTCTTGACTAGGGGTAAAAGA-TTGAA
131 TGATCGGGGTAAGACACTGATGTGTCTTCAATCAG-CCCTC-TGACTA-GGGTAAAAGACTAG-A
120506 TG
192 TG
* * * *
120508 CTTCAATCTGCCTCATGATCGGGGTAAGAGATAGGTGTGTTTTTAATCTGCCCTT-TGATTAGGG
1 CTTCAATCTGCCTCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATCT-ACCTTCTGATTAGGG
* * * *
120572 TAAAAGATTGGATGCTGCAATCTGTCCCATGATCGAGATAAGAGATT
65 T-AAAGATTGGATGCTTCAATCTGCCCCATGATCGAGGTAAAAGATT
120619 GTCATGTCTT
Statistics
Matches: 259, Mismatches: 40, Indels: 17
0.82 0.13 0.05
Matches are distributed among these distances:
192 1 0.00
193 70 0.27
194 8 0.03
195 13 0.05
196 91 0.35
197 45 0.17
198 31 0.12
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (193 bp):
CTTCAATCTGCCTCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATCTACCTTCTGATTAGGGT
AAAGATTGGATGCTTCAATCTGCCCCATGATCGAGGTAAAAGATTAGATGATTCAATCTGCCCCA
TGATCGGGGTAAGACACTGATGTGTCTTCAATCAGCCCTCTGACTAGGGTAAAAGACTAGATG
Found at i:120614 original size:78 final size:78
Alignment explanation
Indices: 120389--120776 Score: 467
Period size: 78 Copynumber: 4.9 Consensus size: 78
120379 AGATTAGATG
** * * * * *
120389 CTTCAATCTGCCC-CATGATCGGGGTAAAAGATTGGATGATTCAATTTGTCTCATGATCGGGGTA
1 CTTCAATCTGCCCTC-TGATTAGGGTAAAAGATTGGATGCTTCAATCTGCCCCATGATCGAGGTA
*
120453 AGAGATTGATGTGT
65 AGAGATTGGTGTGT
* * * *
120467 CTTCAATCTGCCCCTCTTGACTAGGGGTAAAAGATTGAATGCTTCAATCTGCCTCATGATCGGGG
1 CTTCAATCTG-CCCTC-TGATTA-GGGTAAAAGATTGGATGCTTCAATCTGCCCCATGATCGAGG
*
120532 TAAGAGATAGGTGTGT
63 TAAGAGATTGGTGTGT
* * * * * *
120548 TTTTAATCTGCCCTTTGATTAGGGTAAAAGATTGGATGCTGCAATCTGTCCCATGATCGAGATAA
1 CTTCAATCTGCCCTCTGATTAGGGTAAAAGATTGGATGCTTCAATCTGCCCCATGATCGAGGTAA
*
120613 GAGATT-GTCATGT
66 GAGATTGGT-GTGT
* *
120626 CTTCAATCTGCCCTCTGATTAGGGTAAAAGATTGGATGCTTCAATTTGCCCCGTGATCG-GAGTA
1 CTTCAATCTGCCCTCTGATTAGGGTAAAAGATTGGATGCTTCAATCTGCCCCATGATCGAG-GTA
120690 AGAGATTGGTGTGT
65 AGAGATTGGTGTGT
* * * *
120704 CTTCAATTTGCCCACTGATTAGTGTAAAAGATTGGATGCTTCAATCTGCCCCATGATCGAGGTAT
1 CTTCAATCTGCCCTCTGATTAGGGTAAAAGATTGGATGCTTCAATCTGCCCCATGATCGAGGTAA
120769 GAGATTGG
66 GAGATTGG
120777 ATGGTAGCTT
Statistics
Matches: 266, Mismatches: 37, Indels: 14
0.84 0.12 0.04
Matches are distributed among these distances:
77 3 0.01
78 185 0.70
79 11 0.04
80 8 0.03
81 59 0.22
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (78 bp):
CTTCAATCTGCCCTCTGATTAGGGTAAAAGATTGGATGCTTCAATCTGCCCCATGATCGAGGTAA
GAGATTGGTGTGT
Found at i:121079 original size:31 final size:30
Alignment explanation
Indices: 121035--121228 Score: 199
Period size: 30 Copynumber: 6.4 Consensus size: 30
121025 AAAATAAAAA
*
121035 TTTTAGAAAGTTTAGGGGTTAAAATGGAAT
1 TTTTAGAAAGTTTAGGGGTTAAAATGTAAT
* * *
121065 TTTTAAAAAAGTTTAGTGTTTAAAATGTAAT
1 TTTT-AGAAAGTTTAGGGGTTAAAATGTAAT
* *
121096 TTTTAGAAATTTTAGGAGTTAAAATGTAAT
1 TTTTAGAAAGTTTAGGGGTTAAAATGTAAT
* ** * *
121126 TTTTAGAAAGGTTAGGGGTCGAAATGAAAC
1 TTTTAGAAAGTTTAGGGGTTAAAATGTAAT
* * *
121156 TTTTAGGAATTTTAGGGGCTAAAATGTAAT
1 TTTTAGAAAGTTTAGGGGTTAAAATGTAAT
* * * * *
121186 ATTTAGAAAATTTAGGGGTCAAAATTTAAA
1 TTTTAGAAAGTTTAGGGGTTAAAATGTAAT
*
121216 TTTTGGAAAGTTT
1 TTTTAGAAAGTTT
121229 TGAGGTCGAA
Statistics
Matches: 129, Mismatches: 34, Indels: 2
0.78 0.21 0.01
Matches are distributed among these distances:
30 103 0.80
31 26 0.20
ACGTcount: A:0.38, C:0.02, G:0.21, T:0.39
Consensus pattern (30 bp):
TTTTAGAAAGTTTAGGGGTTAAAATGTAAT
Found at i:121179 original size:60 final size:60
Alignment explanation
Indices: 121021--121229 Score: 220
Period size: 60 Copynumber: 3.5 Consensus size: 60
121011 GGAAAAATAA
* * * * *
121021 GGTCAAAATAAAAATTTTAGAAAGTTTAGGGGTTAAAATGGAATTTTTAAAAAAGTTTAGT
1 GGTCAAAATGAAAATTTTAGAAATTTTAGGGGTTAAAATGTAATTTTT-AGAAAGTTTAGG
* * * * * *
121082 GTTTAAAATGTAATTTTTAGAAATTTTAGGAGTTAAAATGTAATTTTTAGAAAGGTTAGG
1 GGTCAAAATGAAAATTTTAGAAATTTTAGGGGTTAAAATGTAATTTTTAGAAAGTTTAGG
* * * * * *
121142 GGTCGAAATGAAACTTTTAGGAATTTTAGGGGCTAAAATGTAATATTTAGAAAATTTAGG
1 GGTCAAAATGAAAATTTTAGAAATTTTAGGGGTTAAAATGTAATTTTTAGAAAGTTTAGG
** *
121202 GGTCAAAATTTAAATTTTGGAAAGTTTT
1 GGTCAAAATGAAAATTTTAGAAA-TTTT
121230 GAGGTCGAAA
Statistics
Matches: 119, Mismatches: 28, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
60 75 0.63
61 44 0.37
ACGTcount: A:0.40, C:0.02, G:0.21, T:0.37
Consensus pattern (60 bp):
GGTCAAAATGAAAATTTTAGAAATTTTAGGGGTTAAAATGTAATTTTTAGAAAGTTTAGG
Found at i:123005 original size:38 final size:39
Alignment explanation
Indices: 122954--123860 Score: 408
Period size: 38 Copynumber: 23.1 Consensus size: 39
122944 TTTTGATTTA
122954 GGGGTAAAAGATTGTATG-CTTCAATC-GTCCCCATGATC
1 GGGGTAAAAGATTGTATGTCTTCAATCTG-CCCCATGATC
* *
122992 GGGGTAAAAGATTGAATAATGTCTTCAAAT-TGCCTCATGGTC
1 GGGGTAAAAGATTG--T-ATGTCTTC-AATCTGCCCCATGATC
* * **
123034 GGGGTAAGAGATTGAATGATGTCTTTAATCTATCCCATGATC
1 GGGGTAAAAGATTG--T-ATGTCTTCAATCTGCCCCATGATC
* * * * * * * *
123076 GAGGTAAGAGATTAG-ATGGCTTCAGTTTACCGCATGGTC
1 GGGGTAAAAGATT-GTATGTCTTCAATCTGCCCCATGATC
* *
123115 GAGGTAAGAGATTGGATTATGTCTTCAATCTGCCCCATGATC
1 GGGGTAAAAGATT-G--TATGTCTTCAATCTGCCCCATGATC
* * ** *
123157 GGGGTAAAAGATTGGACGGATTTAATCTGCCCCATGATC
1 GGGGTAAAAGATTGTATGTCTTCAATCTGCCCCATGATC
* * *
123196 GAGGTAAGAGATTGGATGATGTCTTCAATCTGCCTCATGATC
1 GGGGTAAAAGATT-G-T-ATGTCTTCAATCTGCCCCATGATC
* * *
123238 GGTGTAAAAGATTGGATG-CTTTAATCTGCCCCATGATC
1 GGGGTAAAAGATTGTATGTCTTCAATCTGCCCCATGATC
* * * * * * * *
123276 AGTGTAAGAGATCGACATGTCTTTAATTTGCCCTC-TGATT
1 GGGGTAAAAGATTG-TATGTCTTCAATCTGCCC-CATGATC
* * * *
123316 AGGGTAAAAAATTAG-ATG-CTTCAGTTTGCCCCATGATC
1 GGGGTAAAAGATT-GTATGTCTTCAATCTGCCCCATGATC
* * * * * ** *
123354 GGGGTTAGAGATTAGTGTGCCTTTAATCTGCCCTTTGATT
1 GGGGTAAAAGATT-GTATGTCTTCAATCTGCCCCATGATC
** * *
123394 AAGGTAAAAGATTGGATG-CTTCAATCTGCCTCATGATC
1 GGGGTAAAAGATTGTATGTCTTCAATCTGCCCCATGATC
* * * * *
123432 GGGGTAAGAGATTGGTGTGTCTTCAATTTGCTCTC-TGATT
1 GGGGTAAAAGATT-GTATGTCTTCAATCTGC-CCCATGATC
** * * *
123472 AAGGTAAAA-ATTGGATG-CTTCAATTTGCCTCATGATC
1 GGGGTAAAAGATTGTATGTCTTCAATCTGCCCCATGATC
* * * *
123509 GGGGTAAAAGATTGGATG-ATTGAATCTGTCCCATGATC
1 GGGGTAAAAGATTGTATGTCTTCAATCTGCCCCATGATC
* * * * * *
123547 GGGGTAATAGATTGGAGTGCCTCCAATCTGCCCCTCTTGACTA
1 GGGGTAAAAGATTGTA-TGTCTTCAATCTG-CCC-CATGA-TC
* *
123590 GGGGTAAAAGATTGGATG-CTTCAATCTACCCCATGATC
1 GGGGTAAAAGATTGTATGTCTTCAATCTGCCCCATGATC
* * * * * *
123628 AGGGTAAGAGATTAGTGTGTCTTCAATCTGCTCTC-TAATT
1 GGGGTAAAAGATT-GTATGTCTTCAATCTGC-CCCATGATC
** * * * * *
123668 AAGGTAAAAGATTGGATG-CTTTAATTTTCCCCATAATC
1 GGGGTAAAAGATTGTATGTCTTCAATCTGCCCCATGATC
** * * * *
123706 GGGGTAAGGGATTGGTGTGTCTTTAATTTGCCCTC-TGATT
1 GGGGTAAAAGATT-GTATGTCTTCAATCTGCCC-CATGATC
* * ** * *
123746 AGGGTAAAAAATTGGGTG-CTTCAATGTGCCCCATGATT
1 GGGGTAAAAGATTGTATGTCTTCAATCTGCCCCATGATC
* * *
123784 GGGGTAAGAA-ATTG-GTGTCTTTAA---GCCCTC-T-ATT
1 GGGGTAA-AAGATTGTATGTCTTCAATCTGCCC-CATGATC
* * * *
123818 AGGGTAAAAGATTGGATGT-GTCAATCTACCCCATGATC
1 GGGGTAAAAGATTGTATGTCTTCAATCTGCCCCATGATC
123856 GGGGT
1 GGGGT
123861 TTTAGATTGG
Statistics
Matches: 666, Mismatches: 154, Indels: 98
0.73 0.17 0.11
Matches are distributed among these distances:
33 2 0.00
34 16 0.02
35 8 0.01
36 5 0.01
37 33 0.05
38 205 0.31
39 103 0.15
40 128 0.19
41 26 0.04
42 119 0.18
43 21 0.03
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (39 bp):
GGGGTAAAAGATTGTATGTCTTCAATCTGCCCCATGATC
Found at i:123251 original size:81 final size:80
Alignment explanation
Indices: 123014--123658 Score: 438
Period size: 81 Copynumber: 8.1 Consensus size: 80
123004 TGAATAATGT
* * * * * *
123014 CTTCAAAT-TGCCTCATGGTCGGGGTAAGAGATTGAATGATGTCTTTAATCTATCC-CATGA-TC
1 CTTC-AATCTGCCCCATGATCGGGGTAAGAGATTGGATGATGTCTTCAATCT-GCCTCATGATTA
* *
123076 GAGGTAAGAGATTAGATGG
64 G-GGTAAAAGATTGGAT-G
* * * * * * * * **
123095 CTTCAGTTTACCGCATGGTCGAGGTAAGAGATTGGATTATGTCTTCAATCTGCCCCATGATCGGG
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGATGTCTTCAATCTGCCTCATGATTAGG
*
123160 GTAAAAGATTGGACGG
66 GTAAAAGATTGGA-TG
* * * *
123176 ATTTAATCTGCCCCATGATCGAGGTAAGAGATTGGATGATGTCTTCAATCTGCCTCATGA-TCGG
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGATGTCTTCAATCTGCCTCATGATTAGG
123240 TGTAAAAGATTGGATG
66 -GTAAAAGATTGGATG
* * * * * * *
123256 CTTTAATCTGCCCCATGATCAGTGTAAGAGA-TCGA-CATGTCTTTAATTTGCCCTC-TGATTAG
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGATGTCTTCAATCTG-CCTCATGATTAG
* *
123318 GGTAAAAAATTAGATG
65 GGTAAAAGATTGGATG
* * * * * * * *
123334 CTTCAGTTTGCCCCATGATCGGGGTTAGAGATTAG-TG-TGCCTTTAATCTGCC-CTTTGATTAA
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGATGTCTTCAATCTGCCTC-ATGATTAG
123396 GGTAAAAGATTGGATG
65 GGTAAAAGATTGGATG
* * *
123412 CTTCAATCTGCCTCATGATCGGGGTAAGAGATTGG-TG-TGTCTTCAATTTGCTCTC-TGATTAA
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGATGTCTTCAATCTGC-CTCATGATTAG
123474 GGTAAAA-ATTGGATG
65 GGTAAAAGATTGGATG
* * * * **
123489 CTTCAATTTGCCTCATGATCGGGGTAAAAGATTGGATGA----TTGAATCTGTCC-CATGATCGG
1 CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGATGTCTTCAATCTG-CCTCATGATTAG
*
123549 GGTAATAGATTGGAGTG
65 GGTAAAAGATTGGA-TG
* * * * * *
123566 CCTCCAATCTGCCCCTCTTGACTAGGGGTAAAAGATT-G--GATG-CTTCAATCTACCCCATGAT
1 -CTTCAATCTG-CCC-CATGA-TCGGGGTAAGAGATTGGATGATGTCTTCAATCTGCCTCATGAT
* *
123627 CAGGGTAAGAGATTAGTG-TG
62 TAGGGTAAAAGATT-G-GATG
123647 TCTTCAATCTGC
1 -CTTCAATCTGC
123659 TCTCTAATTA
Statistics
Matches: 459, Mismatches: 76, Indels: 59
0.77 0.13 0.10
Matches are distributed among these distances:
74 1 0.00
75 18 0.04
76 8 0.02
77 45 0.10
78 153 0.33
79 15 0.03
80 43 0.09
81 173 0.38
82 2 0.00
83 1 0.00
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.32
Consensus pattern (80 bp):
CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATGATGTCTTCAATCTGCCTCATGATTAGG
GTAAAAGATTGGATG
Found at i:123349 original size:78 final size:76
Alignment explanation
Indices: 123133--123520 Score: 291
Period size: 78 Copynumber: 5.0 Consensus size: 76
123123 AGATTGGATT
*** * * * *
123133 ATGTCTTCAATCTGCCC-CATGATCGGGGTAAAAGATTGGACGGATTTAATCTGCCCCATGATC-
1 ATGTCTTCAATCTGCCCTC-TGATTAAGGTAAAAAATTGGA-TGCTTCAATCTGCCCCATGATCA
123196 GAGGTAAGAGATTGGA
64 G-GGTAAGAGA-T-GA
** * *
123212 TGATGTCTTCAATCTG-CCTCATGA-TCGGTGTAAAAGATTGGATGCTTTAATCTGCCCCATGAT
1 --ATGTCTTCAATCTGCCCTC-TGATTAAG-GTAAAAAATTGGATGCTTCAATCTGCCCCATGAT
*
123275 CAGTGTAAGAGATCGA
62 CAGGGTAAGAGAT-GA
* * * * * * *
123291 CATGTCTTTAATTTGCCCTCTGATTAGGGTAAAAAATTAGATGCTTCAGTTTGCCCCATGATCGG
1 -ATGTCTTCAATCTGCCCTCTGATTAAGGTAAAAAATTGGATGCTTCAATCTGCCCCATGATCAG
* *
123356 GGTTAGAGATTA
65 GGTAAGAGATGA
* * * * * *
123368 GTGTGCCTTTAATCTGCCCTTTGATTAAGGTAAAAGATTGGATGCTTCAATCTGCCTCATGATCG
1 ATGT--CTTCAATCTGCCCTCTGATTAAGGTAAAAAATTGGATGCTTCAATCTGCCCCATGATCA
*
123433 GGGTAAGAGATTGGT
64 GGGTAAGAGA-T-GA
* * * * * *
123448 GTGTCTTCAATTTGCTCTCTGATTAAGGT-AAAAATTGGATGCTTCAATTTGCCTCATGATCGGG
1 ATGTCTTCAATCTGCCCTCTGATTAAGGTAAAAAATTGGATGCTTCAATCTGCCCCATGATCAGG
*
123512 GTAAAAGAT
66 GTAAGAGAT
123521 TGGATGATTG
Statistics
Matches: 260, Mismatches: 38, Indels: 23
0.81 0.12 0.07
Matches are distributed among these distances:
76 4 0.02
77 41 0.16
78 135 0.52
79 11 0.04
80 36 0.14
81 33 0.13
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.32
Consensus pattern (76 bp):
ATGTCTTCAATCTGCCCTCTGATTAAGGTAAAAAATTGGATGCTTCAATCTGCCCCATGATCAGG
GTAAGAGATGA
Found at i:123547 original size:115 final size:119
Alignment explanation
Indices: 123137--123640 Score: 320
Period size: 115 Copynumber: 4.3 Consensus size: 119
123127 TGGATTATGT
* * * * * *
123137 CTTCAATCTGCCCCATGATCGGGGTAAAAGATTGGACGGATTTAATCTGCCCCATGATCGAGGTA
1 CTTCAATCTACCCCATGATCAGGGTAAAAGATTGGA-TGATTCAATCTGCCTCATGATCGGGGTA
* * * *
123202 AGAGATTGGATGATGTCTTCAATCTG--CCTCATGA-TCG-GTGTAAAAGATTGGATG
65 AGAGATTGGA-G-TGCCTCCAATCTGCCCCTCTTGACTAGAG-GTAAAAGATTGGATG
* * * * * * * * * **
123256 CTTTAATCTGCCCCATGATCAGTGTAAGAGATCGACATGTCTTTAATTTGCCCTC-TGATTAGGG
1 CTTCAATCTACCCCATGATCAGGGTAAAAGATTG-GATG-ATTCAATCTG-CCTCATGATCGGGG
* * * * * * * * * * *
123320 TAAAAAATTAGA-TG-CTTCAGTTTG-CCC-CATGA-TCGGGGTTAGAGATTAGTG-TG
63 TAAGAGATTGGAGTGCCTCCAATCTGCCCCTCTTGACTAGAGGTAAAAGATT-G-GATG
* * ** * * *
123373 CCTTTAATCTGCCCTTTGATTAAGGTAAAAGATTGGATGCTTCAATCTGCCTCATGATCGGGGTA
1 -CTTCAATCTACCCCATGATCAGGGTAAAAGATTGGATGATTCAATCTGCCTCATGATCGGGGTA
* * * * * *
123438 AGAGATTGGTGTGTCTTCAATTTG-CTCTC-TGATTA-AGGTAAAA-ATTGGATG
65 AGAGATTGGAGTGCCTCCAATCTGCCCCTCTTGACTAGAGGTAAAAGATTGGATG
* * * * *
123489 CTTCAATTTGCCTCATGATCGGGGTAAAAGATTGGATGATTGAATCTGTCC-CATGATCGGGGTA
1 CTTCAATCTACCCCATGATCAGGGTAAAAGATTGGATGATTCAATCTG-CCTCATGATCGGGGTA
* *
123553 ATAGATTGGAGTGCCTCCAATCTGCCCCTCTTGACTAGGGGTAAAAGATTGGATG
65 AGAGATTGGAGTGCCTCCAATCTGCCCCTCTTGACTAGAGGTAAAAGATTGGATG
*
123608 CTTCAATCTACCCCATGATCAGGGTAAGAGATT
1 CTTCAATCTACCCCATGATCAGGGTAAAAGATT
123641 AGTGTGTCTT
Statistics
Matches: 301, Mismatches: 65, Indels: 38
0.75 0.16 0.09
Matches are distributed among these distances:
115 75 0.25
116 56 0.19
117 21 0.07
118 54 0.18
119 68 0.23
120 24 0.08
121 3 0.01
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.31
Consensus pattern (119 bp):
CTTCAATCTACCCCATGATCAGGGTAAAAGATTGGATGATTCAATCTGCCTCATGATCGGGGTAA
GAGATTGGAGTGCCTCCAATCTGCCCCTCTTGACTAGAGGTAAAAGATTGGATG
Found at i:123635 original size:196 final size:194
Alignment explanation
Indices: 123345--123712 Score: 540
Period size: 196 Copynumber: 1.9 Consensus size: 194
123335 TTCAGTTTGC
* * ** *
123345 CCCATGATCGGGGTTAGAGATTAGTGTGCCTTTAATCTGCCCTTTGATTAAGGTAAAAGATTGGA
1 CCCATGATCGGGGTAAGAGATTAGAGTGCCTCCAATCTGCCCTTTGACTAAGGTAAAAGATTGGA
* * * * * *
123410 TGCTTCAATCTGCCTCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATTTGCTCTCTGATTAAG
66 TGCTTCAATCTACCCCATGATCAGGGTAAGAGATTAGTGTGTCTTCAATCTGCTCTCTAATTAAG
* *
123475 GTAAAA-ATTGGATGCTTCAATTTGCCTCATGATCGGGGTAAAAGATTGGATGATTGAATCTGT
131 GTAAAAGATTGGATGCTTCAATTTGCCCCATAATCGGGGTAAAAGATTGGATGATTGAATCTGT
* * *
123538 CCCATGATCGGGGTAATAGATTGGAGTGCCTCCAATCTGCCCCTCTTGACTAGGGGTAAAAGATT
1 CCCATGATCGGGGTAAGAGATTAGAGTGCCTCCAATCTG-CCCT-TTGACTA-AGGTAAAAGATT
123603 GGATGCTTCAATCTACCCCATGATCAGGGTAAGAGATTAGTGTGTCTTCAATCTGCTCTCTAATT
63 GGATGCTTCAATCTACCCCATGATCAGGGTAAGAGATTAGTGTGTCTTCAATCTGCTCTCTAATT
* *
123668 AAGGTAAAAGATTGGATGCTTTAATTTTCCCCATAATCGGGGTAA
128 AAGGTAAAAGATTGGATGCTTCAATTTGCCCCATAATCGGGGTAA
123713 GGGATTGGTG
Statistics
Matches: 153, Mismatches: 18, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
193 33 0.22
194 4 0.03
195 6 0.04
196 79 0.52
197 31 0.20
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.32
Consensus pattern (194 bp):
CCCATGATCGGGGTAAGAGATTAGAGTGCCTCCAATCTGCCCTTTGACTAAGGTAAAAGATTGGA
TGCTTCAATCTACCCCATGATCAGGGTAAGAGATTAGTGTGTCTTCAATCTGCTCTCTAATTAAG
GTAAAAGATTGGATGCTTCAATTTGCCCCATAATCGGGGTAAAAGATTGGATGATTGAATCTGT
Found at i:123676 original size:352 final size:352
Alignment explanation
Indices: 123137--123860 Score: 903
Period size: 352 Copynumber: 2.1 Consensus size: 352
123127 TGGATTATGT
*
123137 CTTCAATCTGCCCCATGATCGGGGTAAAAGATTGGACGGATTTAATCTGCCCCATGATCGAGGTA
1 CTTCAATCTGCCCCATGATCGGGGTAAAAGATTGGACGGATTGAATCTGCCCCATGATCGAGGTA
* * * * * *
123202 AGAGATTGGATGATGTCTTCAATCTGCCTCATGATCGGTGTAAAAGATTGGATGCTTTAATCTGC
66 AGAGATTGGATGATGCCTCCAATCTGCCTCATGATAGGGGTAAAAGATTGGATGCTTCAATCTAC
* * * * * *
123267 CCCATGATCAGTGTAAGAGATCGACATGTCTTTAATTTGCCCTCTGATTAGGGTAAAAAATTAGA
131 CCCATGATCAGGGTAAGAGATAGACATGTCTTCAATCTGCCCTCTAATTAAGGTAAAAAATTAGA
* * * *
123332 TGCTTCAGTTTGCCCCATGATCGGGGTTAGAGATTAGTGTGCCTTTAATCTGCCCTTTGATTAAG
196 TGCTTCAATTTGCCCCATAATCGGGGTAAGAGATTAGTGTGCCTTTAATCTGCCCTCTGATTAAG
* * *
123397 GTAAAAGATTGGATGCTTCAATCTGCCTCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATTTG
261 GTAAAAAATTGGATGCTTCAATCTGCCCCATGATCGGGGTAAGAAATTGGTGTGTCTTCAATTTG
123462 CTCTCTGATTAAGGTAAAAATTGGATG
326 CTCTCTGATTAAGGTAAAAATTGGATG
* * * * *
123489 CTTCAATTTGCCTCATGATCGGGGTAAAAGATTGGA-TGATTGAATCTGTCCCATGATCGGGGTA
1 CTTCAATCTGCCCCATGATCGGGGTAAAAGATTGGACGGATTGAATCTGCCCCATGATCGAGGTA
* *
123553 ATAGATTGGA-G-TGCCTCCAATCTGCCCCTCTTGACTAGGGGTAAAAGATTGGATGCTTCAATC
66 AGAGATTGGATGATGCCTCCAATCTG--CCTCATGA-TAGGGGTAAAAGATTGGATGCTTCAATC
** * *
123616 TACCCCATGATCAGGGTAAGAGATTAG-TGTGTCTTCAATCTGCTCTCTAATTAAGGTAAAAGAT
128 TACCCCATGATCAGGGTAAGAGA-TAGACATGTCTTCAATCTGCCCTCTAATTAAGGTAAAAAAT
* * * * * * *
123680 TGGATGCTTTAATTTTCCCCATAATCGGGGTAAGGGATTGGTGTGTCTTTAATTTGCCCTCTGAT
192 TAGATGCTTCAATTTGCCCCATAATCGGGGTAAGAGATTAGTGTGCCTTTAATCTGCCCTCTGAT
* * * * *
123745 TAGGGTAAAAAATTGGGTGCTTCAATGTGCCCCATGATTGGGGTAAGAAATT-G-GTGTCTTTAA
257 TAAGGTAAAAAATTGGATGCTTCAATCTGCCCCATGATCGGGGTAAGAAATTGGTGTGTCTTCAA
* *
123808 ---GCCCTCT-ATTAGGGTAAAAGATTGGATG
322 TTTGCTCTCTGATTAAGGTAAAA-ATTGGATG
*
123836 -TGTCAATCTACCCCATGATCGGGGT
1 CT-TCAATCTGCCCCATGATCGGGGT
123861 TTTAGATTGG
Statistics
Matches: 318, Mismatches: 48, Indels: 17
0.83 0.13 0.04
Matches are distributed among these distances:
346 12 0.04
347 34 0.11
349 11 0.03
350 10 0.03
351 41 0.13
352 208 0.65
353 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (352 bp):
CTTCAATCTGCCCCATGATCGGGGTAAAAGATTGGACGGATTGAATCTGCCCCATGATCGAGGTA
AGAGATTGGATGATGCCTCCAATCTGCCTCATGATAGGGGTAAAAGATTGGATGCTTCAATCTAC
CCCATGATCAGGGTAAGAGATAGACATGTCTTCAATCTGCCCTCTAATTAAGGTAAAAAATTAGA
TGCTTCAATTTGCCCCATAATCGGGGTAAGAGATTAGTGTGCCTTTAATCTGCCCTCTGATTAAG
GTAAAAAATTGGATGCTTCAATCTGCCCCATGATCGGGGTAAGAAATTGGTGTGTCTTCAATTTG
CTCTCTGATTAAGGTAAAAATTGGATG
Found at i:123681 original size:159 final size:149
Alignment explanation
Indices: 123511--123871 Score: 364
Period size: 159 Copynumber: 2.3 Consensus size: 149
123501 TCATGATCGG
* *
123511 GGTAAAAGATTGGATGATTGAATCTGTCCCATGATCGGGGTAATAGATTGGAGTGCCTCCAATCT
1 GGTAAAAGATTGGATG-TTCAATCTATCCCATGATCGGGGTAATAGATTGGAGTGCCTCCAATCT
* *
123576 GCCCCTCTTGACTAGGGGTAAAAGATTGGATGCTTCAATCTACCCCATGATCAGGGTAAGAGATT
65 G-CCCTC-TGACTA-GGGTAAAAAATTGGATGCTTCAATCTACCCCATGATCAGGGTAAGAAATT
*
123641 AGTGTGTCTTCAATCTGCTCTCTAATTAA
127 -G-GTGTCTTCAA---GCCCTCT-ATTAA
* * * ** * * ** *
123670 GGTAAAAGATTGGATGCTTTAAT-TTTCCCCATAATCGGGGTAAGGGATTGGTGTGTCTTTAATT
1 GGTAAAAGATTGGATG-TTCAATCTAT-CCCATGATCGGGGTAATAGATTGGAGTGCCTCCAATC
* * * * **
123734 TGCCCTCTGATTAGGGTAAAAAATTGGGTGCTTCAATGTGCCCCATGATTGGGGTAAGAAATTGG
64 TGCCCTCTGACTAGGGTAAAAAATTGGATGCTTCAATCTACCCCATGATCAGGGTAAGAAATTGG
* *
123799 TGTCTTTAAGCCCTCTATTAG
129 TGTCTTCAAGCCCTCTATTAA
* **
123820 GGTAAAAGATTGGATGTGTCAATCTACCCCATGATCGGGGTTTTAGATTGGA
1 GGTAAAAGATTGGATGT-TCAATCTATCCCATGATCGGGGTAATAGATTGGA
123872 TGGTAGCTTC
Statistics
Matches: 168, Mismatches: 31, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
149 1 0.01
150 43 0.26
151 7 0.04
154 9 0.05
155 1 0.01
156 43 0.26
157 5 0.03
158 7 0.04
159 52 0.31
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.32
Consensus pattern (149 bp):
GGTAAAAGATTGGATGTTCAATCTATCCCATGATCGGGGTAATAGATTGGAGTGCCTCCAATCTG
CCCTCTGACTAGGGTAAAAAATTGGATGCTTCAATCTACCCCATGATCAGGGTAAGAAATTGGTG
TCTTCAAGCCCTCTATTAA
Found at i:123724 original size:78 final size:78
Alignment explanation
Indices: 123510--123860 Score: 340
Period size: 78 Copynumber: 4.5 Consensus size: 78
123500 CTCATGATCG
* * * * * * *
123510 GGGTAAAAGATTGGATGATTGAATCTGT-CCCATGATCGGGGTAATAGATTGGAGTGCCTCCAAT
1 GGGTAAAAGATTGGATGCTTCAAT-TTTCCCCATGATCGGGGTAAGAGATTGGTGTGTCTTCAAT
*
123574 CTGCCCCTCTTGACTA
65 CTG-CCCTC-TGATTA
* * * *
123590 GGGGTAAAAGATTGGATGCTTCAATCTACCCCATGATCAGGGTAAGAGATTAGTGTGTCTTCAAT
1 -GGGTAAAAGATTGGATGCTTCAATTTTCCCCATGATCGGGGTAAGAGATTGGTGTGTCTTCAAT
* *
123655 CTGCTCTCTAATTA
65 CTGCCCTCTGATTA
* * * * * *
123669 AGGTAAAAGATTGGATGCTTTAATTTTCCCCATAATCGGGGTAAGGGATTGGTGTGTCTTTAATT
1 GGGTAAAAGATTGGATGCTTCAATTTTCCCCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATC
123734 TGCCCTCTGATTA
66 TGCCCTCTGATTA
* * * * * * *
123747 GGGTAAAAAATTGGGTGCTTCAATGTGCCCCATGATTGGGGTAAGAAATT-G-GTGTCTTTAA--
1 GGGTAAAAGATTGGATGCTTCAATTTTCCCCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATC
123808 -GCCCTCT-ATTA
66 TGCCCTCTGATTA
* *
123819 GGGTAAAAGATTGGATG-TGTCAATCTACCCCATGATCGGGGT
1 GGGTAAAAGATTGGATGCT-TCAATTTTCCCCATGATCGGGGT
123861 TTTAGATTGG
Statistics
Matches: 227, Mismatches: 41, Indels: 13
0.81 0.15 0.05
Matches are distributed among these distances:
71 1 0.00
72 39 0.17
73 7 0.03
76 10 0.04
77 1 0.00
78 106 0.47
79 4 0.02
80 4 0.02
81 55 0.24
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (78 bp):
GGGTAAAAGATTGGATGCTTCAATTTTCCCCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATC
TGCCCTCTGATTA
Found at i:124030 original size:42 final size:42
Alignment explanation
Indices: 123979--124066 Score: 99
Period size: 42 Copynumber: 2.1 Consensus size: 42
123969 CACCTTTGTA
*
123979 GCTTAAATCTAGCCCTT-TATAG-CTTTGAGATTTGCCTTTACG
1 GCTTAAATCTA-CCCTTATATAGTC-TTGAGATTCGCCTTTACG
* ** *
124021 GCTTCAATCTACTTTTATATAGTCTTGAGATTCGCCTTTGCG
1 GCTTAAATCTACCCTTATATAGTCTTGAGATTCGCCTTTACG
124063 GCTT
1 GCTT
124067 TAATTTGCTT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
41 3 0.08
42 35 0.90
43 1 0.03
ACGTcount: A:0.19, C:0.22, G:0.17, T:0.42
Consensus pattern (42 bp):
GCTTAAATCTACCCTTATATAGTCTTGAGATTCGCCTTTACG
Found at i:124727 original size:112 final size:111
Alignment explanation
Indices: 124438--124751 Score: 484
Period size: 111 Copynumber: 2.8 Consensus size: 111
124428 ACTAACCGTC
* *
124438 ATTTCAATGCAAAAATGCTTGAACAGGGTTGTAAGGTGGATAAAATTGAATTTTATTGGAGGTAA
1 ATTTCAATGCAAAAATGCTTGAACAAGGTTGTAAGGTGGATAAAATTGAATTTTATTGGAGGCAA
* * *
124503 AACTCGCATGAATGAAAAGATTTAAAATCATTAGTCTACTAACTTT
66 AGCTCGCATGAATGAAAAGATTAAAAATCATTAGTCCACTAACTTT
** * *
124549 ATTTCAATGCAAACGTGCTTGAACAAGGTTGCAAGGCGGATAAAATTGAATTTTATTGGAGGCAA
1 ATTTCAATGCAAAAATGCTTGAACAAGGTTGTAAGGTGGATAAAATTGAATTTTATTGGAGGCAA
*
124614 AGCTCGTATGAATGAAAAGATTAAAAATCATTAGTCCACTAACTATT
66 AGCTCGCATGAATGAAAAGATTAAAAATCATTAGTCCACTAACT-TT
* * * * *
124661 ATTTCAATGCAAATATGCTTGAACAAGGTTGTAAGGTGGATAATATTGAAATTTATTGAAGACAA
1 ATTTCAATGCAAAAATGCTTGAACAAGGTTGTAAGGTGGATAAAATTGAATTTTATTGGAGGCAA
124726 AGCTCGCATGAATGAAAAGATTAAAA
66 AGCTCGCATGAATGAAAAGATTAAAA
124752 TGACAAACAT
Statistics
Matches: 183, Mismatches: 19, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
111 99 0.54
112 84 0.46
ACGTcount: A:0.40, C:0.11, G:0.19, T:0.30
Consensus pattern (111 bp):
ATTTCAATGCAAAAATGCTTGAACAAGGTTGTAAGGTGGATAAAATTGAATTTTATTGGAGGCAA
AGCTCGCATGAATGAAAAGATTAAAAATCATTAGTCCACTAACTTT
Found at i:130737 original size:59 final size:58
Alignment explanation
Indices: 130693--131126 Score: 527
Period size: 59 Copynumber: 7.4 Consensus size: 58
130683 TCTTTGGACA
* **
130693 TTCGAGGGTAAAATGGTAATTTTTGGAAGTTTTGGGGTCAAAAATAAGATTTTTGGGAG
1 TTCGAGGGTAAAATGGTAATTTTTGGAAGTTTTGGGGTTAAAAATGGGATTTTT-GGAG
* * *
130752 TTCGAGGGTAAAATGGTAATTTTTGGAAGTTTTAGGGTT-AAAATGAGATTTTTTGAAG
1 TTCGAGGGTAAAATGGTAATTTTTGGAAGTTTTGGGGTTAAAAATGGGA-TTTTTGGAG
* * * * *
130810 TT-TAGGGGTAAAATGGTAATTTTTTGAAGTTTTAGGGTTAAAAATGAGATTTTTAGTAG
1 TTCGA-GGGTAAAATGGTAATTTTTGGAAGTTTTGGGGTTAAAAATGGGATTTTT-GGAG
** *
130869 TTCGAGGGTAAAATGGTAATTTTTGGAAGTTTTGGTATCAAAAATGGGATTTTTGGAAG
1 TTCGAGGGTAAAATGGTAATTTTTGGAAGTTTTGGGGTTAAAAATGGGATTTTTGG-AG
* * *
130928 TTTG-GGGTTAAAATGGTAA-TTTTGGGAGTTTTGGGGTT-AAAATGGGATTTTTAGAGG
1 TTCGAGGG-TAAAATGGTAATTTTTGGAAGTTTTGGGGTTAAAAATGGGATTTTTGGA-G
* * * * * *
130985 TTTGGGGGTAAAATGGTAATTTTTGAAAGTTTTAGGGTTAAAATTGGGATTTTTAGAGG
1 TTCGAGGGTAAAATGGTAATTTTTGGAAGTTTTGGGGTTAAAAATGGGATTTTTGGA-G
* *
131044 TTTGGGGGTAAAATGGTAATTTTTGGAAGTTTTGGGGTTAAAAATGGGATTTTTGGACG
1 TTCGAGGGTAAAATGGTAATTTTTGGAAGTTTTGGGGTTAAAAATGGGATTTTTGGA-G
131103 TTCGAGGGTAAAATGGTAATTTTT
1 TTCGAGGGTAAAATGGTAATTTTT
131127 AAACAGTTTA
Statistics
Matches: 332, Mismatches: 32, Indels: 22
0.86 0.08 0.06
Matches are distributed among these distances:
56 1 0.00
57 32 0.10
58 89 0.27
59 209 0.63
60 1 0.00
ACGTcount: A:0.29, C:0.02, G:0.30, T:0.39
Consensus pattern (58 bp):
TTCGAGGGTAAAATGGTAATTTTTGGAAGTTTTGGGGTTAAAAATGGGATTTTTGGAG
Found at i:131055 original size:175 final size:175
Alignment explanation
Indices: 130693--131125 Score: 647
Period size: 175 Copynumber: 2.5 Consensus size: 175
130683 TCTTTGGACA
** *
130693 TTCGAGGGTAAAATGGTAATTTTTGGAAGTTTTGGGGTCAAAAATAAGATTTTTGGGAGTTCGAG
1 TTCGAGGGTAAAATGGTAATTTTTGGAAGTTTTGGGGTCAAAAATGGGATTTTTGGAAGTTCGAG
*
130758 GGTAAAATGGTAATTTTTGGAAGTTTTAGGGTTAAAATGAGATTTTTTGAAGTTTAGGGGTAAAA
66 GGTAAAATGGTAA-TTTTGGAAGTTTTAGGGTTAAAATGAGATTTTTAGAAGTTTAGGGGTAAAA
130823 TGGTAATTTTTTGAAGTTTTAGGGTTAAAAATGAGATTTTTAGTAG
130 TGGTAATTTTTTGAAGTTTTAGGGTTAAAAATGAGATTTTTAGTAG
** *
130869 TTCGAGGGTAAAATGGTAATTTTTGGAAGTTTTGGTATCAAAAATGGGATTTTTGGAAGTTTG-G
1 TTCGAGGGTAAAATGGTAATTTTTGGAAGTTTTGGGGTCAAAAATGGGATTTTTGGAAGTTCGAG
* * * * *
130933 GGTTAAAATGGTAATTTTGGGAGTTTTGGGGTTAAAATGGGATTTTTAGAGGTTTGGGGGTAAAA
66 GG-TAAAATGGTAATTTTGGAAGTTTTAGGGTTAAAATGAGATTTTTAGAAGTTTAGGGGTAAAA
* *
130998 TGGTAA-TTTTTGAAAGTTTTAGGGTTAAAATTGGGATTTTTAG-AGG
130 TGGTAATTTTTTG-AAGTTTTAGGGTTAAAAATGAGATTTTTAGTA-G
* * * *
131044 TTTGGGGGTAAAATGGTAATTTTTGGAAGTTTTGGGGTTAAAAATGGGATTTTTGGACGTTCGAG
1 TTCGAGGGTAAAATGGTAATTTTTGGAAGTTTTGGGGTCAAAAATGGGATTTTTGGAAGTTCGAG
131109 GGTAAAATGGTAATTTT
66 GGTAAAATGGTAATTTT
131126 TAAACAGTTT
Statistics
Matches: 232, Mismatches: 21, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
174 7 0.03
175 154 0.66
176 71 0.31
ACGTcount: A:0.29, C:0.02, G:0.30, T:0.39
Consensus pattern (175 bp):
TTCGAGGGTAAAATGGTAATTTTTGGAAGTTTTGGGGTCAAAAATGGGATTTTTGGAAGTTCGAG
GGTAAAATGGTAATTTTGGAAGTTTTAGGGTTAAAATGAGATTTTTAGAAGTTTAGGGGTAAAAT
GGTAATTTTTTGAAGTTTTAGGGTTAAAAATGAGATTTTTAGTAG
Found at i:131139 original size:29 final size:28
Alignment explanation
Indices: 130697--131126 Score: 270
Period size: 29 Copynumber: 14.7 Consensus size: 28
130687 TGGACATTCG
130697 AGGGTAAAATGGTAATTTTTGGAAGTTTT
1 AGGGTAAAATGGTAATTTTTGGAAG-TTT
* * * *
130726 GGGGTCAAAAAT--AAGATTTTTGGGAGTTCG
1 AGGGT--AAAATGGTA-ATTTTTGGAAGTT-T
130756 AGGGTAAAATGGTAATTTTTGGAAGTTTT
1 AGGGTAAAATGGTAATTTTTGGAAG-TTT
*
130785 AGGGTTAAAAT-G-AGATTTTTTGAAGTTT
1 AGGG-TAAAATGGTA-ATTTTTGGAAGTTT
*
130813 AGGGGTAAAATGGTAATTTTTTGAAGTTTT
1 A-GGGTAAAATGGTAATTTTTGGAAG-TTT
* * *
130843 AGGGTTAAAAAT-G-AGATTTTTAGTAGTTCG
1 AGGG-T-AAAATGGTA-ATTTTTGGAAGTT-T
130873 AGGGTAAAATGGTAATTTTTGGAAGTTT
1 AGGGTAAAATGGTAATTTTTGGAAGTTT
* * *
130901 TGGTATCAAAAATGG-GATTTTTGGAAGTTT
1 AGG-GT--AAAATGGTAATTTTTGGAAGTTT
* *
130931 GGGGTTAAAATGGTAA-TTTTGGGAGTTTT
1 AGGG-TAAAATGGTAATTTTTGGAAG-TTT
* * * *
130960 GGGGTTAAAATGG-GATTTTTAGAGGTTT
1 AGGG-TAAAATGGTAATTTTTGGAAGTTT
* *
130988 GGGGGTAAAATGGTAATTTTTGAAAGTTTT
1 -AGGGTAAAATGGTAATTTTTGGAAG-TTT
* * *
131018 AGGGTTAAAATTGG-GATTTTTAGAGGTTT
1 AGGG-TAAAA-TGGTAATTTTTGGAAGTTT
*
131047 GGGGGTAAAATGGTAATTTTTGGAAGTTTT
1 -AGGGTAAAATGGTAATTTTTGGAAG-TTT
* * * *
131077 GGGGTTAAAAATGG-GATTTTTGGACGTTCG
1 AGGG-T-AAAATGGTAATTTTTGGAAGTT-T
131107 AGGGTAAAATGGTAATTTTT
1 AGGGTAAAATGGTAATTTTT
131127 AAACAGTTTA
Statistics
Matches: 319, Mismatches: 44, Indels: 76
0.73 0.10 0.17
Matches are distributed among these distances:
28 60 0.19
29 135 0.42
30 97 0.30
31 27 0.08
ACGTcount: A:0.29, C:0.01, G:0.30, T:0.39
Consensus pattern (28 bp):
AGGGTAAAATGGTAATTTTTGGAAGTTT
Found at i:131989 original size:28 final size:26
Alignment explanation
Indices: 131943--132004 Score: 72
Period size: 25 Copynumber: 2.3 Consensus size: 26
131933 TCTTTTTTTC
*
131943 TTTTTTAAAACAACGTTTCCAAACCCCTT
1 TTTTTTAAAACAACATTTCC---CCCCTT
*
131972 TTTTTTTAAA-AACATTTCCCCCCTT
1 TTTTTTAAAACAACATTTCCCCCCTT
131997 TTTTTTAA
1 TTTTTTAA
132005 GCCGTTTTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 13 0.43
28 8 0.27
29 9 0.30
ACGTcount: A:0.27, C:0.24, G:0.02, T:0.47
Consensus pattern (26 bp):
TTTTTTAAAACAACATTTCCCCCCTT
Found at i:132958 original size:22 final size:22
Alignment explanation
Indices: 132914--132958 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
132904 AAATTTGAAG
* *
132914 TTAAATTTAAATTAAGATTAAT
1 TTAAATTTAAATTAAAATAAAT
*
132936 TTAAATTTAATTTAAAATAAAT
1 TTAAATTTAAATTAAAATAAAT
132958 T
1 T
132959 AAAAAGGGCC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (22 bp):
TTAAATTTAAATTAAAATAAAT
Found at i:133614 original size:204 final size:204
Alignment explanation
Indices: 133221--134437 Score: 1823
Period size: 204 Copynumber: 6.0 Consensus size: 204
133211 TTACTGCATC
* * * * * * *
133221 GTTTATTTCGATTCGCTTCTCTATATCTCATCAGGACA-ACGAGTTTGGTTCACTTCTTAGTATC
1 GTTTGTTTCAATTCACTCCTCTGTATCTCATCAGGA-AGACGAATTTGGTTCACTTCTCAGTATC
* * *
133285 TCATCTGGAAGCTAACCTTTTATTGCTTCGACCCGCTTCTTAGTGTCTCATCAAGG-AGCAT-GG
65 TCATCAGGAAGCTAACCTTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATC-AGGAAGC-TGGG
* * * **
133348 GTTCGAAGATTTTGCTTGTTTCGAGATTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGAT
128 GTTTGAAGATTTTGCTCGTTTTGAGCCTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGAT
*
133413 GATCACGTCGCT
193 GATCACATCGCT
* * * *
133425 GTTTGTTTCAATTCACTCCTCTGTATTTCGTCAGGAAGACGAATTTGGTTCACTTCTTAATATCT
1 GTTTGTTTCAATTCACTCCTCTGTATCTCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCT
*
133490 CATCAGGAAGCTAACCTTTTATTGCTTCGACCTGCTTTTCAGTGTCTCATCAGGAAGGC-GGGGT
66 CATCAGGAAGCTAACCTTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAA-GCTGGGGT
** * * * *
133554 TCAAAGATTTCGCTCATTTTGAGTCTCGTTTGGGTCTTCTTCTTAGTGTCTCATCAGGAAGATGA
130 TTGAAGATTTTGCTCGTTTTGAGCCTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGA
*
133619 TCACATCGTT
195 TCACATCGCT
* * *
133629 GTTTGTTTCAATTCGCTCCTCTGTACCTCATCAGGAAGATGAATTTGGTTCACTTCTCAGTATCT
1 GTTTGTTTCAATTCACTCCTCTGTATCTCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCT
* * *
133694 CATCAAGTAGCTAACCTTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAATCTGGGGTT
66 CATCAGGAAGCTAACCTTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGGTT
133759 TGAAGATTTTGCTCGTTTTGAGCCTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGAT
131 TGAAGATTTTGCTCGTTTTGAGCCTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGAT
*
133824 CACATCACT
196 CACATCGCT
* * * * * *
133833 GTTTGTTTAAATTCGCTCCTCTGTATCTTATCAGGAAAACAAATTTGGTTCACTTCTCAATATCT
1 GTTTGTTTCAATTCACTCCTCTGTATCTCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCT
* *
133898 CATCAGGAAGCTAGCCTTTTATTGCTTCAACCTGCTTCTCAGTGTCTCATCAGGAAGCT-GGGTT
66 CATCAGGAAGCTAACCTTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGGTT
*
133962 TGAAGATTTTGCTCGTTTTGAGCCTTGTTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGAT
131 TGAAGATTTTGCTCGTTTTGAGCCTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGAT
*
134027 CACCTCGCT
196 CACATCGCT
* *
134036 GTTTGTTTCAATTCACTCCTCTGTATCTCATCAGGAAGACGAATTTGGTTTACTTATCAGTATCT
1 GTTTGTTTCAATTCACTCCTCTGTATCTCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCT
* * *
134101 TATCAGGAAGCTAACCTTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAAGAAGCTGGGTTT
66 CATCAGGAAGCTAACCTTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGGTT
* *
134166 TGAAGATTTTGCTTGTTTTGAGCCTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAAGAAGATGAT
131 TGAAGATTTTGCTCGTTTTGAGCCTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGAT
134231 CACATCGCT
196 CACATCGCT
* *
134240 GTTTGTTTCAATTCACTCCTCTGTACCTCATCAAGAAGACGAATTTGGTTCACTTCTCAGTATCT
1 GTTTGTTTCAATTCACTCCTCTGTATCTCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCT
* * *
134305 TATCAAGAAGCTAACCTTTTATTGCTTCGACCTACTTCTCAGTGTCTCATCAGGAAGCTGGGGTT
66 CATCAGGAAGCTAACCTTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGGTT
* * *
134370 TGAAGATTTTGCTCGTTTTTAGCCTCGTCTGGGTCTTCTTCTTAGTGTCTCATCAGGAAGATGAT
131 TGAAGATTTTGCTCGTTTTGAGCCTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGAT
134435 CAC
196 CAC
134438 GTCGTTTGTG
Statistics
Matches: 920, Mismatches: 87, Indels: 12
0.90 0.09 0.01
Matches are distributed among these distances:
203 193 0.21
204 725 0.79
205 2 0.00
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.38
Consensus pattern (204 bp):
GTTTGTTTCAATTCACTCCTCTGTATCTCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCT
CATCAGGAAGCTAACCTTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGGTT
TGAAGATTTTGCTCGTTTTGAGCCTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGAT
CACATCGCT
Found at i:134170 original size:407 final size:406
Alignment explanation
Indices: 133221--134437 Score: 1853
Period size: 407 Copynumber: 3.0 Consensus size: 406
133211 TTACTGCATC
* * * * * *
133221 GTTTATTTCGATTCGCTTCTCTATATCTCATCAGGACA-ACGAGTTTGGTTCACTTCTTAGTATC
1 GTTTGTTTCAATTCGCTCCTCTGTATCTCATCAGGA-AGACGAATTTGGTTCACTTCTCAGTATC
* * * *
133285 TCATCTGGAAGCTAACCTTTTATTGCTTCGACCCGCTTCTTAGTGTCTCATCAAGGAGCATGGGT
65 TCATCAGGAAGCTAACCTTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAAGAAGC-TGGGT
* * **
133350 TCGAAGATTTTGCTTGTTTCGAGATTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGA
129 TTGAAGATTTTGCTTGTTTTGAGCCTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGA
* *
133415 TCACGTCGCTGTTTGTTTCAATTCACTCCTCTGTAT-TTCGTCAGGAAGACGAATTTGGTTCACT
194 TCACATCGCTGTTTGTTTCAATTCACTCCTCTGTATCTT-ATCAGGAAGACGAATTTGGTTCACT
* *
133479 TCTTAATATCTCATCAGGAAGCTAACCTTTTATTGCTTCGACCTGCTTTTCAGTGTCTCATCAGG
258 TCTCAATATCTCATCAGGAAGCTAACCTTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGG
* ** * * *
133544 AAGGCGGGGTTCAAAGATTTCGCTCATTTTGAGTCTCGTTTGGGTCTTCTTCTTAGTGTCTCATC
323 AA-GCTGGGTTTGAAGATTTTGCTCGTTTTGAGCCTCGTTTGGGTCTTCTTCTTAGTGTCTCATC
*
133609 AGGAAGATGATCACATCGTT
387 AGGAAGATGATCACATCGCT
* *
133629 GTTTGTTTCAATTCGCTCCTCTGTACCTCATCAGGAAGATGAATTTGGTTCACTTCTCAGTATCT
1 GTTTGTTTCAATTCGCTCCTCTGTATCTCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCT
* * * *
133694 CATCAAGTAGCTAACCTTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAATCTGGGGTT
66 CATCAGGAAGCTAACCTTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAAGAAGCT-GGGTT
*
133759 TGAAGATTTTGCTCGTTTTGAGCCTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGAT
130 TGAAGATTTTGCTTGTTTTGAGCCTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGAT
* * * * *
133824 CACATCACTGTTTGTTTAAATTCGCTCCTCTGTATCTTATCAGGAAAACAAATTTGGTTCACTTC
195 CACATCGCTGTTTGTTTCAATTCACTCCTCTGTATCTTATCAGGAAGACGAATTTGGTTCACTTC
* *
133889 TCAATATCTCATCAGGAAGCTAGCCTTTTATTGCTTCAACCTGCTTCTCAGTGTCTCATCAGGAA
260 TCAATATCTCATCAGGAAGCTAACCTTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAA
* *
133954 GCTGGGTTTGAAGATTTTGCTCGTTTTGAGCCTTGTTTGGGTCTTCTTCTCAGTGTCTCATCAGG
325 GCTGGGTTTGAAGATTTTGCTCGTTTTGAGCCTCGTTTGGGTCTTCTTCTTAGTGTCTCATCAGG
*
134019 AAGATGATCACCTCGCT
390 AAGATGATCACATCGCT
* * *
134036 GTTTGTTTCAATTCACTCCTCTGTATCTCATCAGGAAGACGAATTTGGTTTACTTATCAGTATCT
1 GTTTGTTTCAATTCGCTCCTCTGTATCTCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCT
*
134101 TATCAGGAAGCTAACCTTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAAGAAGCTGGGTTT
66 CATCAGGAAGCTAACCTTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAAGAAGCTGGG-TT
*
134166 TGAAGATTTTGCTTGTTTTGAGCCTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAAGAAGATGAT
130 TGAAGATTTTGCTTGTTTTGAGCCTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGAT
* * *
134231 CACATCGCTGTTTGTTTCAATTCACTCCTCTGTACCTCATCAAGAAGACGAATTTGGTTCACTTC
195 CACATCGCTGTTTGTTTCAATTCACTCCTCTGTATCTTATCAGGAAGACGAATTTGGTTCACTTC
* * * *
134296 TCAGTATCTTATCAAGAAGCTAACCTTTTATTGCTTCGACCTACTTCTCAGTGTCTCATCAGGAA
260 TCAATATCTCATCAGGAAGCTAACCTTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAA
* *
134361 GCTGGGGTTTGAAGATTTTGCTCGTTTTTAGCCTCGTCTGGGTCTTCTTCTTAGTGTCTCATCAG
325 GCT-GGGTTTGAAGATTTTGCTCGTTTTGAGCCTCGTTTGGGTCTTCTTCTTAGTGTCTCATCAG
134426 GAAGATGATCAC
389 GAAGATGATCAC
134438 GTCGTTTGTG
Statistics
Matches: 732, Mismatches: 72, Indels: 10
0.90 0.09 0.01
Matches are distributed among these distances:
406 3 0.00
407 372 0.51
408 355 0.48
409 2 0.00
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.38
Consensus pattern (406 bp):
GTTTGTTTCAATTCGCTCCTCTGTATCTCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCT
CATCAGGAAGCTAACCTTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAAGAAGCTGGGTTT
GAAGATTTTGCTTGTTTTGAGCCTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGATC
ACATCGCTGTTTGTTTCAATTCACTCCTCTGTATCTTATCAGGAAGACGAATTTGGTTCACTTCT
CAATATCTCATCAGGAAGCTAACCTTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAG
CTGGGTTTGAAGATTTTGCTCGTTTTGAGCCTCGTTTGGGTCTTCTTCTTAGTGTCTCATCAGGA
AGATGATCACATCGCT
Found at i:134229 original size:611 final size:612
Alignment explanation
Indices: 133231--134437 Score: 1936
Period size: 611 Copynumber: 2.0 Consensus size: 612
133221 GTTTATTTCG
* * * * * * *
133231 ATTCGCTTCTCTATATCTCATCAGGACAACGAGTTTGGTTCACTTCTTAGTATCTCATCTGGAAG
1 ATTCGCTCCTCTATATCTCATCAGGAAAACAAATTTGGTTCACTTCTCAATATCTCATCAGGAAG
* *
133296 CTAACCTTTTATTGCTTCGACCCGCTTCTTAGTGTCTCATCAAGGAGCATGGGTTCGAAGATTTT
66 CTAACCTTTTATTGCTTCAACCCGCTTCTCAGTGTCTCATCAAGGAGCATGGGTTCGAAGATTTT
* *
133361 GCTTGTTTCGAGATTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGATCACGTCGCTG
131 GCTCGTTTCGAGATTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGATCACCTCGCTG
* * * *
133426 TTTGTTTCAATTCACTCCTCTGTATTTCGTCAGGAAGACGAATTTGGTTCACTTCTTAATATCTC
196 TTTGTTTCAATTCACTCCTCTGTATCTCATCAGGAAGACGAATTTGGTTCACTTATCAATATCTC
* *
133491 ATCAGGAAGCTAACCTTTTATTGCTTCGACCTGCTTTTCAGTGTCTCATCAGGAAGGCGGGGTTC
261 ATCAGGAAGCTAACCTTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAAGAAGGCGGGGTTC
* * *
133556 AAAGATTTCGCTCATTTTGAGTCTCGTTTGGGTCTTCTTCTTAGTGTCTCATCAGGAAGATGATC
326 AAAGATTTCGCTCATTTTGAGCCTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAAGAAGATGATC
* * * *
133621 ACATCGTTGTTTGTTTCAATTCGCTCCTCTGTACCTCATCAGGAAGATGAATTTGGTTCACTTCT
391 ACATCGCTGTTTGTTTCAATTCACTCCTCTGTACCTCATCAAGAAGACGAATTTGGTTCACTTCT
* * *
133686 CAGTATCTCATCAAGTAGCTAACCTTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAT
456 CAGTATCTCATCAAGAAGCTAACCTTTTATTGCTTCGACCTACTTCTCAGTGTCTCATCAGGAAG
*
133751 CTGGGGTTTGAAGATTTTGCTCGTTTTGAGCCTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAGG
521 CTGGGGTTTGAAGATTTTGCTCGTTTTGAGCCTCGTCTGGGTCTTCTTCTCAGTGTCTCATCAGG
133816 AAGATGATCACATCACTGTTTGTTTAA
586 AAGATGATCACATCACTGTTTGTTTAA
* *
133843 ATTCGCTCCTCTGTATCTTATCAGGAAAACAAATTTGGTTCACTTCTCAATATCTCATCAGGAAG
1 ATTCGCTCCTCTATATCTCATCAGGAAAACAAATTTGGTTCACTTCTCAATATCTCATCAGGAAG
* * *
133908 CTAGCCTTTTATTGCTTCAACCTGCTTCTCAGTGTCTCATC-AGGAAGC-TGGGTTTGAAGATTT
66 CTAACCTTTTATTGCTTCAACCCGCTTCTCAGTGTCTCATCAAGG-AGCATGGGTTCGAAGATTT
* *
133971 TGCTCGTTTTGAGCCTT-GTTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGATCACCTCGC
130 TGCTCGTTTCGAG-ATTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGATCACCTCGC
* *
134035 TGTTTGTTTCAATTCACTCCTCTGTATCTCATCAGGAAGACGAATTTGGTTTACTTATCAGTATC
194 TGTTTGTTTCAATTCACTCCTCTGTATCTCATCAGGAAGACGAATTTGGTTCACTTATCAATATC
* *
134100 TTATCAGGAAGCTAACCTTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAAGAA-GCTGGGT
259 TCATCAGGAAGCTAACCTTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAAGAAGGC-GGGG
** * **
134164 TTTGAAGATTTTGCTTGTTTTGAGCCTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAAGAAGATG
323 TTCAAAGATTTCGCTCATTTTGAGCCTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAAGAAGATG
134229 ATCACATCGCTGTTTGTTTCAATTCACTCCTCTGTACCTCATCAAGAAGACGAATTTGGTTCACT
388 ATCACATCGCTGTTTGTTTCAATTCACTCCTCTGTACCTCATCAAGAAGACGAATTTGGTTCACT
*
134294 TCTCAGTATCTTATCAAGAAGCTAACCTTTTATTGCTTCGACCTACTTCTCAGTGTCTCATCAGG
453 TCTCAGTATCTCATCAAGAAGCTAACCTTTTATTGCTTCGACCTACTTCTCAGTGTCTCATCAGG
* *
134359 AAGCTGGGGTTTGAAGATTTTGCTCGTTTTTAGCCTCGTCTGGGTCTTCTTCTTAGTGTCTCATC
518 AAGCTGGGGTTTGAAGATTTTGCTCGTTTTGAGCCTCGTCTGGGTCTTCTTCTCAGTGTCTCATC
134424 AGGAAGATGATCAC
583 AGGAAGATGATCAC
134438 GTCGTTTGTG
Statistics
Matches: 545, Mismatches: 47, Indels: 7
0.91 0.08 0.01
Matches are distributed among these distances:
610 2 0.00
611 445 0.82
612 98 0.18
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.38
Consensus pattern (612 bp):
ATTCGCTCCTCTATATCTCATCAGGAAAACAAATTTGGTTCACTTCTCAATATCTCATCAGGAAG
CTAACCTTTTATTGCTTCAACCCGCTTCTCAGTGTCTCATCAAGGAGCATGGGTTCGAAGATTTT
GCTCGTTTCGAGATTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGATCACCTCGCTG
TTTGTTTCAATTCACTCCTCTGTATCTCATCAGGAAGACGAATTTGGTTCACTTATCAATATCTC
ATCAGGAAGCTAACCTTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAAGAAGGCGGGGTTC
AAAGATTTCGCTCATTTTGAGCCTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAAGAAGATGATC
ACATCGCTGTTTGTTTCAATTCACTCCTCTGTACCTCATCAAGAAGACGAATTTGGTTCACTTCT
CAGTATCTCATCAAGAAGCTAACCTTTTATTGCTTCGACCTACTTCTCAGTGTCTCATCAGGAAG
CTGGGGTTTGAAGATTTTGCTCGTTTTGAGCCTCGTCTGGGTCTTCTTCTCAGTGTCTCATCAGG
AAGATGATCACATCACTGTTTGTTTAA
Found at i:134946 original size:23 final size:23
Alignment explanation
Indices: 134916--134960 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
134906 GAATTCTATT
* * *
134916 AAAGAGGATCAATGGAAACAATA
1 AAAGAGGACCAAAGAAAACAATA
134939 AAAGAGGACCAAAGAAAACAAT
1 AAAGAGGACCAAAGAAAACAAT
134961 CACTAGTTGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.60, C:0.11, G:0.20, T:0.09
Consensus pattern (23 bp):
AAAGAGGACCAAAGAAAACAATA
Done.