Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011073.1 Kokia drynarioides strain JFW-HI SEQ_126046, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4778
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.24


Found at i:2587 original size:56 final size:56

Alignment explanation


    Indices: 2520--2634  Score: 230
    Period size: 56  Copynumber: 2.1  Consensus size: 56

       2510 CTCTTGCATA

                                                                    
       2520 CATGCATCATATTTTCGCATACTTTTGCATAACAATCTTAACTTATTAATATTTAT
          1 CATGCATCATATTTTCGCATACTTTTGCATAACAATCTTAACTTATTAATATTTAT

                                                                    
       2576 CATGCATCATATTTTCGCATACTTTTGCATAACAATCTTAACTTATTAATATTTAT
          1 CATGCATCATATTTTCGCATACTTTTGCATAACAATCTTAACTTATTAATATTTAT

               
       2632 CAT
          1 CAT

       2635 CCAGAGCTAC


Statistics
Matches: 59,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  56   59  1.00

ACGTcount: A:0.32, C:0.18, G:0.05, T:0.44


Consensus pattern (56 bp):   
CATGCATCATATTTTCGCATACTTTTGCATAACAATCTTAACTTATTAATATTTAT
Done.