genome.fa.s11080.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011080.1 Kokia drynarioides strain JFW-HI SEQ_126053, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  146168

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44--73	12	2.5	12	88	0	51	26	3	16	53	1.59
787--844	23	2.6	23	78	8	57	55	3	1	39	1.27
2912--3196	41	7.0	41	81	5	281	23	27	24	24	2.00
2912--3196	82	3.5	82	83	2	331	23	27	24	24	2.00
2908--3196	123	2.3	123	84	1	355	23	26	24	24	2.00
3175--3220	24	1.9	24	95	0	83	17	28	21	32	1.96
3137--3261	65	1.9	65	86	3	180	22	26	23	28	1.99
4485--4539	23	2.5	21	79	5	65	40	1	3	54	1.28
5510--5599	28	3.1	28	74	12	83	27	5	32	34	1.80
5585--5657	36	2.0	37	91	2	121	45	2	20	31	1.65
5669--5783	30	3.9	29	79	8	115	42	5	18	33	1.72
5663--5798	60	2.3	58	80	9	148	39	5	19	34	1.76
6849--6938	3	30.0	3	71	8	58	37	3	1	57	1.22
6855--6935	9	8.9	9	74	22	71	39	3	1	55	1.25
6854--6941	12	7.0	12	73	19	72	39	3	1	55	1.24
8663--8742	38	2.1	37	90	2	124	42	8	11	37	1.72
9220--9275	27	2.1	27	96	0	103	35	16	10	37	1.83
27611--27639	14	2.1	14	100	0	58	58	13	20	6	1.58
31832--31862	14	2.2	14	94	0	53	35	0	16	48	1.46
35602--35652	20	2.4	22	80	9	61	35	0	1	62	1.06
36327--36388	30	2.1	30	84	6	81	53	0	4	41	1.22
54994--55038	23	2.0	23	95	0	81	46	8	11	33	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66281--66306	2	13.0	2	100	0	52	50	0	50	0	1.00
69363--69502	10	15.3	9	67	20	51	60	1	2	35	1.17
69370--69419	20	2.5	21	83	9	68	58	0	0	42	0.98
69490--69531	21	2.0	22	86	13	61	57	4	4	33	1.41
69709--69797	9	9.7	9	75	8	54	30	1	1	67	1.05
69709--69758	9	5.1	10	78	11	59	28	2	0	70	0.99
69698--69758	19	3.2	18	83	6	68	26	1	1	70	1.06
69698--69750	18	2.8	19	83	11	65	24	1	1	71	1.06
72939--73007	28	2.5	28	100	0	138	65	2	0	31	1.08
72935--73034	28	3.6	26	86	9	103	67	2	1	30	1.09
73155--73327	90	1.9	91	83	3	224	33	8	17	39	1.81
80196--80252	23	2.4	23	77	8	62	36	19	10	33	1.86
87362--87448	26	3.2	25	77	19	70	58	2	1	37	1.18
98456--98642	96	1.9	96	82	8	229	37	13	18	30	1.90
99024--99139	29	3.9	29	84	10	139	35	1	25	37	1.67
98934--99127	59	3.3	58	79	9	193	32	4	27	34	1.78
100166--100200	3	11.3	3	93	6	61	34	0	0	65	0.93
100857--100900	19	2.3	19	84	4	52	25	2	6	65	1.28
100917--100978	6	10.8	6	70	16	51	54	1	3	40	1.26
100919--100978	17	3.5	18	84	11	72	56	1	3	38	1.26
101430--101542	47	2.4	48	86	1	147	19	27	15	38	1.91
101478--101737	118	2.2	119	94	0	450	21	23	21	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101848--102007	72	2.2	72	90	0	257	20	17	23	38	1.93
108973--109482	256	2.0	256	90	0	795	27	21	20	29	1.98
111519--111691	30	5.9	29	81	5	188	36	2	24	35	1.70
111489--111686	30	6.8	29	75	10	170	38	2	23	35	1.68
111483--111686	59	3.5	57	78	11	216	37	2	24	35	1.70
116111--116152	22	1.9	23	85	9	61	59	0	2	38	1.10
118001--118053	25	2.1	25	89	0	79	13	13	15	58	1.64
118566--118607	8	5.2	8	83	11	50	85	2	2	9	0.77
119430--119470	22	1.9	21	85	14	57	53	4	2	39	1.35
125206--125262	23	2.4	23	82	8	62	29	21	3	45	1.68
127923--127974	26	2.0	26	96	0	95	21	15	28	34	1.94
128664--128699	17	2.2	16	95	5	63	77	2	19	0	0.88
131189--131225	3	12.3	3	100	0	74	0	35	0	64	0.94
140429--140489	17	3.6	17	70	0	59	32	1	11	54	1.46
141154--141192	3	13.0	3	100	0	78	66	0	0	33	0.92
142312--142829	116	4.5	116	81	7	495	34	23	2	38	1.69
142292--142795	29	17.3	28	70	16	211	35	23	1	39	1.66
142317--142828	58	8.8	57	78	8	435	35	23	2	38	1.69
142369--142829	116	4.0	115	82	6	500	34	24	2	38	1.69
144240--144265	2	13.0	2	100	0	52	50	0	0	50	1.00

Tables:   1

The End!