Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011083.1 Kokia drynarioides strain JFW-HI SEQ_126056, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4213
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33


Found at i:735 original size:26 final size:26

Alignment explanation


    Indices: 692--749  Score: 75
    Period size: 26  Copynumber: 2.3  Consensus size: 26

        682 ATTCTAGGTG

                                       
        692 CAATTCTGGACACATTCATG-TAGCGA
          1 CAATTCTGGACACATTCATGCT-GCGA

                        **            
        718 CAATTCTGGACATGTTCATGCTGCGA
          1 CAATTCTGGACACATTCATGCTGCGA

                   
        744 C-ATTCT
          1 CAATTCT

        750 TGGGTGCAAT


Statistics
Matches: 29,  Mismatches: 2, Indels: 3
        0.85            0.06        0.09

Matches are distributed among these distances:
  25    5  0.17
  26   23  0.79
  27    1  0.03

ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31


Consensus pattern (26 bp):   
CAATTCTGGACACATTCATGCTGCGA

Found at i:918 original size:37 final size:37

Alignment explanation


    Indices: 848--919  Score: 90
    Period size: 37  Copynumber: 1.9  Consensus size: 37

        838 AAAATATTCT

                              *       *          
        848 TGCGGTGACAATTTTGGGTACAACCTGGAAGTGCTCA
          1 TGCGGTGACAATTTTGGGCACAACCTAGAAGTGCTCA

                      *        *   *    *      
        885 TGCGGTGACAGTTTTGGGCGCAATCTAGTAGTGCT
          1 TGCGGTGACAATTTTGGGCACAACCTAGAAGTGCT

        920 AAAGCAGCGA


Statistics
Matches: 29,  Mismatches: 6, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  37   29  1.00

ACGTcount: A:0.21, C:0.18, G:0.32, T:0.29


Consensus pattern (37 bp):   
TGCGGTGACAATTTTGGGCACAACCTAGAAGTGCTCA

Found at i:2064 original size:21 final size:21

Alignment explanation


    Indices: 2038--2080  Score: 77
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2028 CAGCTACATG

                         *       
       2038 ATATGCATGAAAATTAAACTA
          1 ATATGCATGAAAAATAAACTA

                                 
       2059 ATATGCATGAAAAATAAACTA
          1 ATATGCATGAAAAATAAACTA

             
       2080 A
          1 A

       2081 GTGCTAAAAA


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.56, C:0.09, G:0.09, T:0.26


Consensus pattern (21 bp):   
ATATGCATGAAAAATAAACTA
Done.