Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011085.1 Kokia drynarioides strain JFW-HI SEQ_126058, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11292
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33


Found at i:5720 original size:15 final size:15

Alignment explanation


    Indices: 5700--5730  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       5690 TCTTCATCAT

                           
       5700 CTTTGGGCATAATGC
          1 CTTTGGGCATAATGC

                           
       5715 CTTTGGGCATAATGC
          1 CTTTGGGCATAATGC

             
       5730 C
          1 C

       5731 CTTGTGTTGA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.19, C:0.23, G:0.26, T:0.32


Consensus pattern (15 bp):   
CTTTGGGCATAATGC

Found at i:10006 original size:22 final size:22

Alignment explanation


    Indices: 9981--10028  Score: 96
    Period size: 22  Copynumber: 2.2  Consensus size: 22

       9971 ATCATCACCA

                                  
       9981 GAAAATGTTGAACTCCTTGCAT
          1 GAAAATGTTGAACTCCTTGCAT

                                  
      10003 GAAAATGTTGAACTCCTTGCAT
          1 GAAAATGTTGAACTCCTTGCAT

                
      10025 GAAA
          1 GAAA

      10029 TTCTTCAAAA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   26  1.00

ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29


Consensus pattern (22 bp):   
GAAAATGTTGAACTCCTTGCAT
Done.