genome.fa.s11086.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011086.1 Kokia drynarioides strain JFW-HI SEQ_126059, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108862

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
992--1026	18	1.9	18	88	0	52	25	5	20	48	1.71
3330--3440	55	2.0	55	100	0	222	16	24	19	39	1.91
4193--4231	20	2.0	20	95	5	71	48	10	5	35	1.59
7191--7268	34	2.3	33	82	8	86	32	15	29	23	1.95
10277--10304	9	3.1	9	100	0	56	53	0	25	21	1.46
18060--18093	6	5.5	6	86	6	50	64	0	2	32	1.08
18061--18106	14	3.6	14	83	13	55	58	2	4	34	1.30
19282--19353	7	10.3	7	84	0	72	34	26	19	19	1.96
19281--19350	14	5.0	14	80	0	86	34	25	21	18	1.96
19281--19353	21	3.5	21	78	0	92	34	26	20	19	1.96
20903--20995	48	1.9	48	97	0	177	25	9	12	51	1.70
20908--20986	26	3.2	26	64	20	69	25	8	13	51	1.70
23491--23539	22	2.3	22	82	3	55	46	0	2	51	1.12
23506--23561	26	2.0	28	83	16	73	48	0	0	51	1.00
23552--23591	13	2.9	14	82	17	57	55	0	0	45	0.99
23624--23680	15	3.5	15	73	17	51	52	1	0	45	1.11
52609--52650	22	1.9	22	85	9	59	40	0	14	45	1.45
53954--54060	27	3.9	27	82	6	126	22	17	23	36	1.95
54049--54155	24	4.5	24	87	0	142	22	25	25	27	2.00
58508--58584	36	2.1	36	85	0	100	36	27	10	25	1.89
60585--60642	30	1.9	30	89	6	91	20	29	25	24	1.99
60735--60776	21	2.0	22	85	4	59	45	19	2	33	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64373--64428	22	2.6	21	80	5	58	37	3	3	55	1.35
68271--68892	314	2.0	315	91	0	1005	27	12	20	39	1.89
80859--80883	12	2.1	12	100	0	50	44	0	0	56	0.99
81301--81345	23	1.9	24	90	4	74	53	0	4	42	1.21
83052--83082	15	2.1	15	93	0	53	45	6	16	32	1.72
85603--85656	21	2.5	20	80	16	56	59	7	0	33	1.25
86137--86197	22	2.8	22	97	0	113	13	21	14	50	1.76
86945--86979	17	2.1	17	89	10	54	60	0	5	34	1.21
93148--93189	22	1.9	22	100	0	84	52	14	21	11	1.73
96590--96631	22	1.9	22	100	0	84	52	14	21	11	1.73
102157--102190	17	1.9	18	88	5	52	35	23	0	41	1.55
102659--102740	42	2.0	42	83	9	105	50	3	2	43	1.33

Tables:   1

The End!