Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011087.1 Kokia drynarioides strain JFW-HI SEQ_126060, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9114
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35


Found at i:6563 original size:6 final size:6

Alignment explanation


    Indices: 6544--6578  Score: 52
    Period size: 6  Copynumber: 5.8  Consensus size: 6

       6534 GGCAACCCAA

                      *                      *      
       6544 TTTTAT TTTCAT TTTTAT TTTTAT TTTTAG TTTTA
          1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTA

       6579 GTTCTAGGTT


Statistics
Matches: 26,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
   6   26  1.00

ACGTcount: A:0.17, C:0.03, G:0.03, T:0.77


Consensus pattern (6 bp):   
TTTTAT

Done.