Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011092.1 Kokia drynarioides strain JFW-HI SEQ_126065, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4110
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25


Found at i:3661 original size:208 final size:208

Alignment explanation


    Indices: 3145--3712  Score: 845
    Period size: 208  Copynumber: 2.7  Consensus size: 208

       3135 AGAAGAAGAT

                  *                                     *                    
       3145 CCAAACAAGGCTCGAAACGAGCAAAATCTTCGAACCCCAGCTTCTTGATGAGACACTGAGAAGCA
          1 CCAAACGAGGCTCGAAACGAGCAAAATCTTCGAACCCCAGCTTCCTGATGAGACACTGAGAAGCA

                                        *          *                         
       3210 GGTTGAAGCACTAAAAGGTTAGCTTCCTAATGAGATACTAAGAAGTGTACCAAATTCGTCTTCCT
         66 GGTTGAAGCACTAAAAGGTTAGCTT-CTGATGAGATACTGAGAAGTGTACCAAATTCGTCTTCCT

                                          *                                  
       3275 GATGAGATACAGAGAAGCGAATTAAAAAAATGATGCGGTCATCTTTCGAACAAGATACTGAGAAA
        130 GATGAGATACAGAGAAGCGAATT-AAAAAACGATGCGGTCATCTTTCGAACAAGATACTGAGAAA

                    *      
       3340 AAGACCAAGTCAAAC
        194 AAGACCAAATCAAAC

              *                           *                                * 
       3355 CCGAACGAGGCTCGAAACGAGCAAAATCTTTGAACCCCAGCTTCCTGATGAGACACTGAGAAGTA
          1 CCAAACGAGGCTCGAAACGAGCAAAATCTTCGAACCCCAGCTTCCTGATGAGACACTGAGAAGCA

                                      *                     *                
       3420 GGTTGAAGCACTAAAAGGTTAGCTTCCGATGAGATACTGAGAAGTGTATCAAATTCGTCTTCCTG
         66 GGTTGAAGCACTAAAAGGTTAGCTTCTGATGAGATACTGAGAAGTGTACCAAATTCGTCTTCCTG

                                                                           * 
       3485 ATGAGATACAGAGAAGCGAATT-AAAAACGATGCGGTCATCTTTC-AGACAAGATACTGAGAAGA
        131 ATGAGATACAGAGAAGCGAATTAAAAAACGATGCGGTCATCTTTCGA-ACAAGATACTGAGAAAA

                           
       3548 AGACCAAATCAAACC
        195 AGACCAAATCAAA-C

                 *     *                   *     *  *                      * 
       3563 CCAAATGAGGCCCGAAACGAGCAAAATCTTCAAACCCTAGTTTCCTGATGAGACACT-AGGAAAC
          1 CCAAACGAGGCTCGAAACGAGCAAAATCTTCGAACCCCAGCTTCCTGATGAGACACTGA-GAAGC

                       *          *                        *     *  *        
       3627 AGGTTGAAGCAATAAAAGGTTAACTTCTGATGAGATACTGAGAAGTGAACCAATTTTGTCTTCCT
         65 AGGTTGAAGCACTAAAAGGTTAGCTTCTGATGAGATACTGAGAAGTGTACCAAATTCGTCTTCCT

                  *  *           
       3692 GATGAGGTATAGAGAAGCGAA
        130 GATGAGATACAGAGAAGCGAA

       3713 CCAAAACAAG


Statistics
Matches: 325,  Mismatches: 30, Indels: 8
        0.90            0.08        0.02

Matches are distributed among these distances:
 206    1  0.00
 207   50  0.15
 208  131  0.40
 209   58  0.18
 210   85  0.26

ACGTcount: A:0.38, C:0.20, G:0.22, T:0.21


Consensus pattern (208 bp):   
CCAAACGAGGCTCGAAACGAGCAAAATCTTCGAACCCCAGCTTCCTGATGAGACACTGAGAAGCA
GGTTGAAGCACTAAAAGGTTAGCTTCTGATGAGATACTGAGAAGTGTACCAAATTCGTCTTCCTG
ATGAGATACAGAGAAGCGAATTAAAAAACGATGCGGTCATCTTTCGAACAAGATACTGAGAAAAA
GACCAAATCAAAC
Done.