Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011097.1 Kokia drynarioides strain JFW-HI SEQ_126070, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 263116
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:2714 original size:29 final size:30
Alignment explanation
Indices: 2676--2739 Score: 96
Period size: 31 Copynumber: 2.2 Consensus size: 30
2666 TATTTTTTTA
*
2676 ATATAATTT-AATCA-AATTAAAATTTCAT
1 ATATAATTTAAATCATAATAAAAATTTCAT
2704 ATATACATTTAAATCATAATAAAAATTTCAT
1 ATATA-ATTTAAATCATAATAAAAATTTCAT
2735 ATATA
1 ATATA
2740 TATATATAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
28 5 0.16
29 4 0.12
30 5 0.16
31 18 0.56
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.41
Consensus pattern (30 bp):
ATATAATTTAAATCATAATAAAAATTTCAT
Found at i:7720 original size:38 final size:38
Alignment explanation
Indices: 7675--7753 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
7665 AAGTCTTTTT
7675 GCTGATAACTTTGCGTGCAATCTGTGCTTCAATCTTTA
1 GCTGATAACTTTGCGTGCAATCTGTGCTTCAATCTTTA
7713 GCTGATAACTTTGCGTGCAATCTGTGCTTCAATCTTTA
1 GCTGATAACTTTGCGTGCAATCTGTGCTTCAATCTTTA
7751 GCT
1 GCT
7754 ATTTTAATTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.20, C:0.22, G:0.19, T:0.39
Consensus pattern (38 bp):
GCTGATAACTTTGCGTGCAATCTGTGCTTCAATCTTTA
Found at i:9726 original size:23 final size:23
Alignment explanation
Indices: 9687--9735 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
9677 TAAAGTGCAA
* *
9687 TTTTACTTTTACTAATTTAAATT
1 TTTTACTTTTACGAATTTAAAAT
9710 TTTTA-TTTATACGAATTTAAAAT
1 TTTTACTTT-TACGAATTTAAAAT
9733 TTT
1 TTT
9736 AAAAATTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 3 0.13
23 20 0.87
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.59
Consensus pattern (23 bp):
TTTTACTTTTACGAATTTAAAAT
Found at i:10640 original size:22 final size:23
Alignment explanation
Indices: 10613--10656 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
10603 TGGTTTATAG
*
10613 ATTTTAAAATATT-TTAATTAAA
1 ATTTTAAAATATTAATAATTAAA
*
10635 ATTTTAAAGTATTAATAATTAA
1 ATTTTAAAATATTAATAATTAA
10657 GTCATTCAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (23 bp):
ATTTTAAAATATTAATAATTAAA
Found at i:23901 original size:29 final size:30
Alignment explanation
Indices: 23837--23901 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 30
23827 CAAAAAAAAA
* *
23837 AAGTTCAAGCCCCAATGTGGGAATAATTGCC
1 AAGTTCAAGCCCCAA-GTGGGAACAATTACC
* *
23868 TAGTTCAAGCCTCAA-TGGGAACAATTACC
1 AAGTTCAAGCCCCAAGTGGGAACAATTACC
23897 AAGTT
1 AAGTT
23902 TAGGGACTAA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
29 16 0.55
31 13 0.45
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.25
Consensus pattern (30 bp):
AAGTTCAAGCCCCAAGTGGGAACAATTACC
Found at i:29143 original size:29 final size:29
Alignment explanation
Indices: 29110--29180 Score: 81
Period size: 31 Copynumber: 2.4 Consensus size: 29
29100 AAATTAATGC
*
29110 TTCATGTATAAAATCGCATAA-AATCAAAG
1 TTCATGTATAAAATCACA-AATAATCAAAG
* *
29139 TTCATGTATAATATCACAAATTTGATCAAAG
1 TTCATGTATAAAATCACAAA--TAATCAAAG
29170 TTCATGTATAA
1 TTCATGTATAA
29181 TTTTGATATT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 2 0.06
29 16 0.44
31 18 0.50
ACGTcount: A:0.44, C:0.13, G:0.10, T:0.34
Consensus pattern (29 bp):
TTCATGTATAAAATCACAAATAATCAAAG
Found at i:29903 original size:20 final size:21
Alignment explanation
Indices: 29866--29905 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
29856 AAAATGTTGT
*
29866 AAATTTTTTTATTAATTTAAG
1 AAATATTTTTATTAATTTAAG
*
29887 AAATATTTTT-TTGATTTAA
1 AAATATTTTTATTAATTTAA
29906 TTAATACCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (21 bp):
AAATATTTTTATTAATTTAAG
Found at i:34919 original size:24 final size:24
Alignment explanation
Indices: 34885--34932 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
34875 CTTTAGGCCA
34885 ATTTTTGGCATTGTATTCTTTACT
1 ATTTTTGGCATTGTATTCTTTACT
*
34909 ATTTTTTGCATTGTATTCTTTACT
1 ATTTTTGGCATTGTATTCTTTACT
34933 TTGGTCCATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.17, C:0.12, G:0.10, T:0.60
Consensus pattern (24 bp):
ATTTTTGGCATTGTATTCTTTACT
Found at i:41609 original size:117 final size:117
Alignment explanation
Indices: 41403--41634 Score: 455
Period size: 117 Copynumber: 2.0 Consensus size: 117
41393 GTAGTAGAGG
41403 GCAGCTTTTAATTTATTATAATGCATTTTTTCGCTTTATGAAATAGTACATAAATTATGTTGCTA
1 GCAGCTTTTAATTTATTATAATGCATTTTTTCGCTTTATGAAATAGTACATAAATTATGTTGCTA
41468 TTAATAAGTTTAGCTGCTCCAGGGTTTTTAGATTGAACCTCTGGTAACATGT
66 TTAATAAGTTTAGCTGCTCCAGGGTTTTTAGATTGAACCTCTGGTAACATGT
*
41520 GCAGCTTTTAATTTATTATAATGCATTTTTTCGCTTTATGAAATAGTACATAAATTGTGTTGCTA
1 GCAGCTTTTAATTTATTATAATGCATTTTTTCGCTTTATGAAATAGTACATAAATTATGTTGCTA
41585 TTAATAAGTTTAGCTGCTCCAGGGTTTTTAGATTGAACCTCTGGTAACAT
66 TTAATAAGTTTAGCTGCTCCAGGGTTTTTAGATTGAACCTCTGGTAACAT
41635 CAATCTTGTT
Statistics
Matches: 114, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
117 114 1.00
ACGTcount: A:0.28, C:0.13, G:0.16, T:0.43
Consensus pattern (117 bp):
GCAGCTTTTAATTTATTATAATGCATTTTTTCGCTTTATGAAATAGTACATAAATTATGTTGCTA
TTAATAAGTTTAGCTGCTCCAGGGTTTTTAGATTGAACCTCTGGTAACATGT
Found at i:48695 original size:16 final size:16
Alignment explanation
Indices: 48656--48697 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
48646 CAGATTGACA
*
48656 TTTTAAAAAATTTAAT
1 TTTTAAAAATTTTAAT
* *
48672 ATTT-AAAATTTTATT
1 TTTTAAAAATTTTAAT
48687 TTTTAAAAATT
1 TTTTAAAAATT
48698 GAGGCTAAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
TTTTAAAAATTTTAAT
Found at i:53628 original size:31 final size:32
Alignment explanation
Indices: 53562--53636 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 32
53552 ACTTAAATAT
*
53562 AAATTTTTTAAAAAATTTAAGGAGTTCAGATA
1 AAATTTTTTAAAAAATTTAAAGAGTTCAGATA
* *
53594 AAATTTTTTAAAAATTTTAAAG-GTTTA-ATGA
1 AAATTTTTTAAAAAATTTAAAGAGTTCAGAT-A
*
53625 AAATTTTCTAAA
1 AAATTTTTTAAA
53637 GTTTGAGAGG
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
30 2 0.05
31 16 0.42
32 20 0.53
ACGTcount: A:0.47, C:0.03, G:0.09, T:0.41
Consensus pattern (32 bp):
AAATTTTTTAAAAAATTTAAAGAGTTCAGATA
Found at i:55126 original size:24 final size:25
Alignment explanation
Indices: 55090--55145 Score: 82
Period size: 24 Copynumber: 2.4 Consensus size: 25
55080 ATAAATATTA
55090 AATATTTTT--AAAAAATTTATTTT
1 AATATTTTTGGAAAAAATTTATTTT
*
55113 AAT-TTTTTGGAAAACATTTATTTT
1 AATATTTTTGGAAAAAATTTATTTT
55137 AATATTTTT
1 AATATTTTT
55146 AGTGTATTTG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
22 5 0.17
23 3 0.10
24 16 0.55
25 5 0.17
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.57
Consensus pattern (25 bp):
AATATTTTTGGAAAAAATTTATTTT
Found at i:68324 original size:5 final size:5
Alignment explanation
Indices: 68314--68340 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
68304 TCGAGTTCAA
68314 TTCCC TTCCC TTCCC TTCCC TTCCC TT
1 TTCCC TTCCC TTCCC TTCCC TTCCC TT
68341 GTATAATGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (5 bp):
TTCCC
Found at i:80954 original size:47 final size:47
Alignment explanation
Indices: 80901--81000 Score: 191
Period size: 47 Copynumber: 2.1 Consensus size: 47
80891 AGATTTTATT
80901 TCAAAATTCAAAATATATCGAATTATCCGATATAAATGAAAGGAACA
1 TCAAAATTCAAAATATATCGAATTATCCGATATAAATGAAAGGAACA
*
80948 TCAAAATTCAAAATATATCGAATTATCCGATATAAATGAAAGGAACC
1 TCAAAATTCAAAATATATCGAATTATCCGATATAAATGAAAGGAACA
80995 TCAAAA
1 TCAAAA
81001 ATTTGGCCTC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 52 1.00
ACGTcount: A:0.51, C:0.14, G:0.10, T:0.25
Consensus pattern (47 bp):
TCAAAATTCAAAATATATCGAATTATCCGATATAAATGAAAGGAACA
Found at i:94479 original size:25 final size:23
Alignment explanation
Indices: 94450--94495 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 23
94440 ATTTATTTTA
94450 ATGTTTTGAGTATTTTTTATATATT
1 ATGTTTT--GTATTTTTTATATATT
*
94475 ATGTTTTTTATTTTTTATATA
1 ATGTTTTGTATTTTTTATATA
94496 AAAAATTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 13 0.65
25 7 0.35
ACGTcount: A:0.24, C:0.00, G:0.09, T:0.67
Consensus pattern (23 bp):
ATGTTTTGTATTTTTTATATATT
Found at i:94504 original size:23 final size:23
Alignment explanation
Indices: 94460--94504 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
94450 ATGTTTTGAG
** **
94460 TATTTTTTATATATTATGTTTTT
1 TATTTTTTATATAAAAAATTTTT
94483 TATTTTTTATATAAAAAATTTT
1 TATTTTTTATATAAAAAATTTT
94505 AATAAGGACA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (23 bp):
TATTTTTTATATAAAAAATTTTT
Found at i:95586 original size:24 final size:24
Alignment explanation
Indices: 95559--95609 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
95549 AATTTGACTC
* *
95559 AAACAACTAAACAAAGTTTAATTG
1 AAACAAATAAACAAAGTTTAACTG
95583 AAACAAATAAACAAAGTTTAACTG
1 AAACAAATAAACAAAGTTTAACTG
95607 AAA
1 AAA
95610 GATTATTTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.59, C:0.12, G:0.08, T:0.22
Consensus pattern (24 bp):
AAACAAATAAACAAAGTTTAACTG
Found at i:97588 original size:24 final size:24
Alignment explanation
Indices: 97554--97604 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
97544 AATTTGACTC
* * *
97554 AAACAACTAAACAGAGTTTAATTG
1 AAACAAATAAACAAAGTTTAACTG
97578 AAACAAATAAACAAAGTTTAACTG
1 AAACAAATAAACAAAGTTTAACTG
97602 AAA
1 AAA
97605 GATTATTTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.57, C:0.12, G:0.10, T:0.22
Consensus pattern (24 bp):
AAACAAATAAACAAAGTTTAACTG
Found at i:110371 original size:23 final size:24
Alignment explanation
Indices: 110332--110376 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 24
110322 GGAGGAGGAG
110332 AAGAAAAAAAAGAAAGG-GAAATA
1 AAGAAAAAAAAGAAAGGAGAAATA
*
110355 AAGAAAAAGACAG-AAGGAGAAA
1 AAGAAAAA-AAAGAAAGGAGAAA
110377 GATTAGTCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 12 0.63
24 7 0.37
ACGTcount: A:0.71, C:0.02, G:0.24, T:0.02
Consensus pattern (24 bp):
AAGAAAAAAAAGAAAGGAGAAATA
Found at i:118011 original size:20 final size:20
Alignment explanation
Indices: 117982--118065 Score: 55
Period size: 20 Copynumber: 4.1 Consensus size: 20
117972 ATTATTAGAT
*
117982 ATTGTTAAAAATATTTTAAA
1 ATTGTAAAAAATATTTTAAA
118002 ATTGTAAAAAA-AGTTATTAAAA
1 ATTGTAAAAAATA-TT-TT-AAA
*** *
118024 ACAATAAAACAT-TATTTAAA
1 ATTGTAAAAAATAT-TTTAAA
* *
118044 ATTTTAAAAAATATATTAAA
1 ATTGTAAAAAATATTTTAAA
118064 AT
1 AT
118066 AGTGTAAATA
Statistics
Matches: 48, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
19 1 0.02
20 30 0.62
21 6 0.12
22 11 0.23
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.37
Consensus pattern (20 bp):
ATTGTAAAAAATATTTTAAA
Found at i:118399 original size:20 final size:19
Alignment explanation
Indices: 118346--118464 Score: 103
Period size: 20 Copynumber: 5.8 Consensus size: 19
118336 TTTTTTGCTG
* *
118346 ATTTTAAATAATGTTTTATA
1 ATTTTAAAT-ATTTTTTACA
*
118366 ATTTTAATAAATTTTTTACA
1 ATTTTAA-ATATTTTTTACA
*
118386 ATTTTAAAATATTTTTAACA
1 ATTTT-AAATATTTTTTACA
118406 ATATTTAATCATTATTTTCTTACA
1 AT-TTTAA--A-TATTTT-TTACA
*
118430 ATTTTAAGTATTTTTTACA
1 ATTTTAAATATTTTTTACA
*
118449 ATTATTATATATTTTT
1 ATT-TTAAATATTTTT
118465 AATATGCAAA
Statistics
Matches: 82, Mismatches: 9, Indels: 16
0.77 0.08 0.15
Matches are distributed among these distances:
19 8 0.10
20 50 0.61
21 6 0.07
22 1 0.01
23 11 0.13
24 6 0.07
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.56
Consensus pattern (19 bp):
ATTTTAAATATTTTTTACA
Found at i:128215 original size:21 final size:21
Alignment explanation
Indices: 128191--128236 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
128181 AAAAATATTT
*
128191 AAAATTCAAAAAATTATATAA
1 AAAATTCAAAAAATTAAATAA
* *
128212 AAAATTCATAAAATTAAATGA
1 AAAATTCAAAAAATTAAATAA
128233 AAAA
1 AAAA
128237 CATGAAGTAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.26
Consensus pattern (21 bp):
AAAATTCAAAAAATTAAATAA
Found at i:135081 original size:69 final size:69
Alignment explanation
Indices: 134950--135082 Score: 185
Period size: 69 Copynumber: 1.9 Consensus size: 69
134940 TTGAGCGAGG
** * * *
134950 TTAGATTTTTAAACACAGATATGTTTTCAAAAAAATTATTGGACGAGAGATCTAAATACTCGAGT
1 TTAGATTTTTAAACACAGATATACTTTCAAAAAAATTATTGGAAGAAAGATCTAAAGACTCGAGT
135015 GATA
66 GATA
* ** *
135019 TTAGATTTTTAAATACAGATATACTTTCAAAAATGTTATTGGAAGAAAGATCTAAAGCCTCGAG
1 TTAGATTTTTAAACACAGATATACTTTCAAAAAAATTATTGGAAGAAAGATCTAAAGACTCGAG
135083 AGATGTGAGT
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
69 55 1.00
ACGTcount: A:0.41, C:0.11, G:0.16, T:0.33
Consensus pattern (69 bp):
TTAGATTTTTAAACACAGATATACTTTCAAAAAAATTATTGGAAGAAAGATCTAAAGACTCGAGT
GATA
Found at i:142817 original size:15 final size:15
Alignment explanation
Indices: 142787--142834 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
142777 AAGAGAGGAG
*
142787 GAGAATAAAAAGAAAA
1 GAGAA-AAAAATAAAA
142803 GAGAAAAAAATAAAA
1 GAGAAAAAAATAAAA
** *
142818 CTGAAAAGAATAAAA
1 GAGAAAAAAATAAAA
142833 GA
1 GA
142835 AAAGGGAAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
15 21 0.81
16 5 0.19
ACGTcount: A:0.73, C:0.02, G:0.17, T:0.08
Consensus pattern (15 bp):
GAGAAAAAAATAAAA
Found at i:143810 original size:6 final size:6
Alignment explanation
Indices: 143789--143876 Score: 51
Period size: 6 Copynumber: 15.0 Consensus size: 6
143779 CCCAACTCAT
** **
143789 TTTAAA TTTATT TTTAAA TTT--A TTCTAGAA TTTAAA TTT-AA TTTAGG
1 TTTAAA TTTAAA TTTAAA TTTAAA TT-TA-AA TTTAAA TTTAAA TTTAAA
* * *
143836 TTTAAG TTTATA TTTAAA TTTAAA ATT--A TTATAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TT-TAAA TTTAAA
143877 AATGAATAAA
Statistics
Matches: 62, Mismatches: 12, Indels: 16
0.69 0.13 0.18
Matches are distributed among these distances:
4 5 0.08
5 7 0.11
6 42 0.68
7 5 0.08
8 3 0.05
ACGTcount: A:0.41, C:0.01, G:0.05, T:0.53
Consensus pattern (6 bp):
TTTAAA
Found at i:143822 original size:18 final size:16
Alignment explanation
Indices: 143801--143876 Score: 62
Period size: 18 Copynumber: 4.4 Consensus size: 16
143791 TAAATTTATT
143801 TTTAAATTTATTCTAGAA
1 TTTAAATTTATT-TA-AA
**
143819 TTTAAATTTAATTTAGG
1 TTTAAATTT-ATTTAAA
*
143836 TTTAAGTTTATATTTAAA
1 TTTAA-ATT-TATTTAAA
*
143854 TTTAAAATTATTATAAA
1 TTTAAATTTATT-TAAA
143871 TTTAAA
1 TTTAAA
143877 AATGAATAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
16 4 0.09
17 16 0.34
18 23 0.49
19 4 0.09
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.51
Consensus pattern (16 bp):
TTTAAATTTATTTAAA
Found at i:143872 original size:17 final size:16
Alignment explanation
Indices: 143846--143877 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
143836 TTTAAGTTTA
143846 TATTTAAATTTAAAAT
1 TATTTAAATTTAAAAT
143862 TATTATAAATTTAAAA
1 TATT-TAAATTTAAAA
143878 ATGAATAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
TATTTAAATTTAAAAT
Found at i:145678 original size:30 final size:29
Alignment explanation
Indices: 145640--145870 Score: 161
Period size: 29 Copynumber: 7.9 Consensus size: 29
145630 TCCCGAAAGT
* *
145640 CCCT-AAACTATTCAGAAATTATATTTTGA
1 CCCTCAAACT-TTCAAAAATTACATTTTGA
* *
145669 CCCTCAAACTTCTCAAAAATTATATTTTTA
1 CCCTCAAACTT-TCAAAAATTACATTTTGA
** * * *
145699 TGCT-GAACTTTTTAAAAATTACAGTTT-A
1 CCCTCAAAC-TTTCAAAAATTACATTTTGA
* * *
145727 CCCCCTAAACTTTCCAAAATTCCATTTTGA
1 CCCTC-AAACTTTCAAAAATTACATTTTGA
*
145757 CCC-CAAACTTTTCAAAAATTACATTTTTA
1 CCCTCAAAC-TTTCAAAAATTACATTTTGA
*
145786 CCCTCAAACTTTCCAAAATTACATTTTGA
1 CCCTCAAACTTTCAAAAATTACATTTTGA
* * *
145815 CCC-C-GATTTGTCTGAAAATTACCATTTT-A
1 CCCTCAAACTT-TC-AAAAATTA-CATTTTGA
* * *
145844 CCCTCGAACTTCCAAAAATTCCATTTT
1 CCCTCAAACTTTCAAAAATTACATTTT
145871 TAACCTCGTT
Statistics
Matches: 160, Mismatches: 29, Indels: 27
0.74 0.13 0.12
Matches are distributed among these distances:
27 3 0.02
28 15 0.09
29 94 0.59
30 45 0.28
31 3 0.02
ACGTcount: A:0.34, C:0.24, G:0.05, T:0.37
Consensus pattern (29 bp):
CCCTCAAACTTTCAAAAATTACATTTTGA
Found at i:145804 original size:87 final size:85
Alignment explanation
Indices: 145662--145959 Score: 239
Period size: 87 Copynumber: 3.4 Consensus size: 85
145652 CAGAAATTAT
* * ** * **
145662 ATTTTGACCCTCAAACTTCTCAAAAATTATATTTTTATGCTGAACTTTTTAAAAATTACAGTTTA
1 ATTTTGACCCTCAAACTTTTCAAAAATTACATTTTTAACCTCAAC-TTTCCAAAATTACA-TTTA
145727 CCCCCTAAACTTTCCAAAATTCC
64 CCCCC-AAACTTTCCAAAATTCC
*
145750 ATTTTGACCC-CAAACTTTTCAAAAATTACATTTTTACCCTCAAACTTTCCAAAATTACATTTTG
1 ATTTTGACCCTCAAACTTTTCAAAAATTACATTTTTAACCTC-AACTTTCCAAAATTACA-TTT-
* * *
145814 A-CCCC-GATTTGTCTGAAAATTACC
63 ACCCCCAAACTT-TC-CAAAATT-CC
* * * ***
145838 ATTTT-ACCCTCGAAC-TTCCAAAAATTCCATTTTTAACCTCGTTTTCTCCAAAAATTACCATTT
1 ATTTTGACCCTCAAACTTTTCAAAAATTACATTTTTAACCTCAACTT-TCC-AAAATTA-CATTT
145901 ACCCCCAAACTTTCCAAAATTCC
63 ACCCCCAAACTTTCCAAAATTCC
* * * *
145924 ATTTTCAACCTC-GATTTTTCCAAAAATTATCATTTT
1 ATTTTGACCCTCAAACTTTT-CAAAAATTA-CATTTT
145960 ACCCCCAGAT
Statistics
Matches: 169, Mismatches: 26, Indels: 29
0.75 0.12 0.13
Matches are distributed among these distances:
85 3 0.02
86 12 0.07
87 94 0.56
88 49 0.29
89 11 0.07
ACGTcount: A:0.33, C:0.26, G:0.04, T:0.38
Consensus pattern (85 bp):
ATTTTGACCCTCAAACTTTTCAAAAATTACATTTTTAACCTCAACTTTCCAAAATTACATTTACC
CCCAAACTTTCCAAAATTCC
Found at i:145861 original size:29 final size:30
Alignment explanation
Indices: 145712--145963 Score: 165
Period size: 29 Copynumber: 8.6 Consensus size: 30
145702 TGAACTTTTT
* *
145712 AAAAATTA-CAGTTTACCCCCTAAACTTTCC
1 AAAAATTACCATTTTACCCTC-AAACTTTCC
*
145742 -AAAATT-CCATTTTGACCC-CAAACTTTTC
1 AAAAATTACCATTTT-ACCCTCAAACTTTCC
145770 AAAAATTA-CATTTTTACCCTCAAACTTTCC
1 AAAAATTACCA-TTTTACCCTCAAACTTTCC
* * *
145800 -AAAATTA-CATTTTGACCC-C-GATTTGTCT
1 AAAAATTACCATTTT-ACCCTCAAACTT-TCC
* *
145828 GAAAATTACCATTTTACCCTCGAAC-TTCC
1 AAAAATTACCATTTTACCCTCAAACTTTCC
* ***
145857 AAAAATT-CCATTTTTAACCTC-GTTTTCTCC
1 AAAAATTACCA-TTTTACCCTCAAACTT-TCC
*
145887 AAAAATTACCA-TTTACCCCCAAACTTTCC
1 AAAAATTACCATTTTACCCTCAAACTTTCC
* * **
145916 -AAAATT-CCATTTTCAACCTCGATTTTTCC
1 AAAAATTACCATTTT-ACCCTCAAACTTTCC
*
145945 AAAAATTATCATTTTACCC
1 AAAAATTACCATTTTACCC
145964 CCAGATGTCT
Statistics
Matches: 175, Mismatches: 26, Indels: 42
0.72 0.11 0.17
Matches are distributed among these distances:
27 6 0.03
28 27 0.15
29 86 0.49
30 46 0.26
31 10 0.06
ACGTcount: A:0.33, C:0.28, G:0.04, T:0.36
Consensus pattern (30 bp):
AAAAATTACCATTTTACCCTCAAACTTTCC
Found at i:145900 original size:59 final size:58
Alignment explanation
Indices: 145712--145963 Score: 239
Period size: 58 Copynumber: 4.3 Consensus size: 58
145702 TGAACTTTTT
* * * * **
145712 AAAAATTA-CAGTTTACCCCCTAAACTTTCCAAAATTCCA-TTTTGACCCCAAACTTTT-C
1 AAAAATTACCATTTTACCCTC-AAACTTTCCAAAATTCCATTTTTAACCTC--GTTTTTCC
* * * * *
145770 AAAAATTA-CATTTTTACCCTCAAACTTTCCAAAATTACA-TTTTGACCCCGATTTGTCT
1 AAAAATTACCA-TTTTACCCTCAAACTTTCCAAAATTCCATTTTTAACCTCG-TTTTTCC
* *
145828 GAAAATTACCATTTTACCCTCGAAC-TTCCAAAAATTCCATTTTTAACCTCGTTTTCTCC
1 AAAAATTACCATTTTACCCTCAAACTTTCC-AAAATTCCATTTTTAACCTCGTTTT-TCC
* *
145887 AAAAATTACCA-TTTACCCCCAAACTTTCCAAAATTCCATTTTCAACCTCGATTTTTCC
1 AAAAATTACCATTTTACCCTCAAACTTTCCAAAATTCCATTTTTAACCTCG-TTTTTCC
*
145945 AAAAATTATCATTTTACCC
1 AAAAATTACCATTTTACCC
145964 CCAGATGTCT
Statistics
Matches: 165, Mismatches: 19, Indels: 19
0.81 0.09 0.09
Matches are distributed among these distances:
57 7 0.04
58 112 0.68
59 46 0.28
ACGTcount: A:0.33, C:0.28, G:0.04, T:0.36
Consensus pattern (58 bp):
AAAAATTACCATTTTACCCTCAAACTTTCCAAAATTCCATTTTTAACCTCGTTTTTCC
Found at i:146009 original size:117 final size:116
Alignment explanation
Indices: 145769--146017 Score: 256
Period size: 117 Copynumber: 2.1 Consensus size: 116
145759 CCAAACTTTT
* * **
145769 CAAAAATTA-CATTTTTACCCTCAAACTTTCCAAAATTACATTTTGACCCCGATTTGTCTGAAAA
1 CAAAAATTACCA--TTTACCCCCAAACTTTCCAAAATTACATTTTAACCCCGATTTGTCCAAAAA
* * **
145833 TTACCATTTTACCCTCGAACTTCCAAAAATTCCATTTTTAACCTCGTTTTCTC
64 TTACCATTTTACCCCCGAACTTCCAAAAATTCCATTTTTAAACTCGACTTCTC
* * *
145886 CAAAAATTACCATTTACCCCCAAACTTTCCAAAATTCCATTTTCAACCTCGATTTTTCCAAAAAT
1 CAAAAATTACCATTTACCCCCAAACTTTCCAAAATTACATTTT-AACCCCGATTTGTCCAAAAAT
* * *
145951 TATCATTTTACCCCC-AGA-TGT-CTAAAATTTCATTTTTTAAACTCGAACTT-TC
65 TACCATTTTACCCCCGA-ACT-TCCAAAAATTCCA-TTTTTAAACTCG-ACTTCTC
* *
146003 CTAAAATTACTATTT
1 CAAAAATTACCATTT
146018 TTCCCTTGGG
Statistics
Matches: 110, Mismatches: 16, Indels: 12
0.80 0.12 0.09
Matches are distributed among these distances:
116 40 0.36
117 66 0.60
118 4 0.04
ACGTcount: A:0.33, C:0.26, G:0.04, T:0.38
Consensus pattern (116 bp):
CAAAAATTACCATTTACCCCCAAACTTTCCAAAATTACATTTTAACCCCGATTTGTCCAAAAATT
ACCATTTTACCCCCGAACTTCCAAAAATTCCATTTTTAAACTCGACTTCTC
Found at i:146018 original size:59 final size:59
Alignment explanation
Indices: 145703--146018 Score: 184
Period size: 58 Copynumber: 5.4 Consensus size: 59
145693 TTTTTATGCT
** * * * * *
145703 GAACTTTTTAAAAATTAC-AGTTTACCCCCTAAACTTTCCAAAATTCCATTTT-GACCCC
1 GAACTTTCCAAAAATTACTATTTTACCCCC-AAACTGTCCAAAATTCCATTTTCAAACTC
* * * * * * * *
145761 AAACTTTTCAAAAATTAC-ATTTTTACCCTCAAACTTTCCAAAATTACATTTT-GACCCC
1 GAACTTTCCAAAAATTACTA-TTTTACCCCCAAACTGTCCAAAATTCCATTTTCAAACTC
* ** * * * * *
145819 G-ATTTGTCTGAAAATTACCATTTTACCCTCGAACT-TCCAAAAATTCCATTTTTAACCTC
1 GAACTT-TCCAAAAATTACTATTTTACCCCCAAACTGTCC-AAAATTCCATTTTCAAACTC
** * * *
145878 G-TTTTCTCCAAAAATTACCA-TTTACCCCCAAACTTTCCAAAATTCCATTTTCAACCTC
1 GAACTT-TCCAAAAATTACTATTTTACCCCCAAACTGTCCAAAATTCCATTTTCAAACTC
** * * * *
145936 GATTTTTCCAAAAATTA-TCATTTTACCCCCAGA-TGTCTAAAATTTCATTTTTTAAACTC
1 GAACTTTCCAAAAATTACT-ATTTTACCCCCAAACTGTCCAAAATTCCA-TTTTCAAACTC
*
145995 GAACTTTCCTAAAATTACTATTTT
1 GAACTTTCCAAAAATTACTATTTT
146019 TCCCTTGGGT
Statistics
Matches: 216, Mismatches: 31, Indels: 21
0.81 0.12 0.08
Matches are distributed among these distances:
57 6 0.03
58 134 0.62
59 75 0.35
60 1 0.00
ACGTcount: A:0.33, C:0.26, G:0.04, T:0.38
Consensus pattern (59 bp):
GAACTTTCCAAAAATTACTATTTTACCCCCAAACTGTCCAAAATTCCATTTTCAAACTC
Found at i:154521 original size:62 final size:62
Alignment explanation
Indices: 154424--154544 Score: 242
Period size: 62 Copynumber: 2.0 Consensus size: 62
154414 AAGTTGTTAA
154424 GTTTTGTGGTCAGCTAAAAGGGGATTGATATCGACCTAGACAAGGTTAAAGCCATACAATAG
1 GTTTTGTGGTCAGCTAAAAGGGGATTGATATCGACCTAGACAAGGTTAAAGCCATACAATAG
154486 GTTTTGTGGTCAGCTAAAAGGGGATTGATATCGACCTAGACAAGGTTAAAGCCATACAA
1 GTTTTGTGGTCAGCTAAAAGGGGATTGATATCGACCTAGACAAGGTTAAAGCCATACAA
154545 GAATTACCTC
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.34, C:0.15, G:0.26, T:0.26
Consensus pattern (62 bp):
GTTTTGTGGTCAGCTAAAAGGGGATTGATATCGACCTAGACAAGGTTAAAGCCATACAATAG
Found at i:157862 original size:50 final size:50
Alignment explanation
Indices: 157613--157849 Score: 271
Period size: 50 Copynumber: 4.7 Consensus size: 50
157603 TCAGTACCAT
* * * * *
157613 GAAGACATGAAGGGAAAGATTTAAGATCGCAACGGCGGATCC-AGAATCACA
1 GAAGACAAGAAGGGAAAGGTTTAAG-TCGCAACGGCGGA-CCGTGTACCACA
* *
157664 -AAGACACAAAAGGGAAAGGTTTAAGTCGCAACGGCGGACCGTGTACCTCA
1 GAAGACA-AGAAGGGAAAGGTTTAAGTCGCAACGGCGGACCGTGTACCACA
* * ** *
157714 GAAGACAAGAAGGGAAAGGTTTAAGTTGTAACGATGGACCGTGTACCTCA
1 GAAGACAAGAAGGGAAAGGTTTAAGTCGCAACGGCGGACCGTGTACCACA
* * *
157764 GAAGACAAGAAGAGAAAGGTTTAAATCGCAACGACGGACCGTGTACCACA
1 GAAGACAAGAAGGGAAAGGTTTAAGTCGCAACGGCGGACCGTGTACCACA
* * *
157814 GAAGACAATAAGGGAAAGATTTAAGCCGCAACGGCG
1 GAAGACAAGAAGGGAAAGGTTTAAGTCGCAACGGCG
157850 ATTCTAGTAC
Statistics
Matches: 159, Mismatches: 24, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
49 2 0.01
50 136 0.86
51 21 0.13
ACGTcount: A:0.39, C:0.18, G:0.28, T:0.14
Consensus pattern (50 bp):
GAAGACAAGAAGGGAAAGGTTTAAGTCGCAACGGCGGACCGTGTACCACA
Found at i:158687 original size:206 final size:206
Alignment explanation
Indices: 158330--159147 Score: 1170
Period size: 206 Copynumber: 4.0 Consensus size: 206
158320 CCAACTCAGG
* * *
158330 GCTCGATGTGAGCAAATCTTCAAATCCCAGCTTCCTGATGAGATACTGAGAAGTAGGTCGAAGCA
1 GCTCGATGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCA
158395 ATAAAATAGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATA
66 ATAAAATAGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATA
* * * *
158460 CAGAGAAGGGGATTAAAACAAGCGATGCAGTCATCTTCCTGATGAGATACTGAGAATAAGACCAA
131 CAGAGAAGCGGATTGAAACAAGCGATGCAGTCATCTTCCTGATGAGATACTAAGAAGAAGACCAA
* *
158525 ATCAAACCCAA
196 ATCAAACTCAC
* * *
158536 GCTCGATGTGAGCAAATCTTCGAACCCTAGCTTCCTGATGAGATATTGAGAAGCAAGTCGAAGCA
1 GCTCGATGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCA
* ** *
158601 ATAAAATGGTTAGCTTCCTGATGAGATACAAAGAAGTGGACCAAATTCGTCTTCTTGATGAGATA
66 ATAAAATAGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATA
* * *
158666 TAGAAAAGCGGATTGAAACAAGCGATGCGGTCATCTTCCTGATGAGATACTAAGAAGAAGACCAA
131 CAGAGAAGCGGATTGAAACAAGCGATGCAGTCATCTTCCTGATGAGATACTAAGAAGAAGACCAA
158731 ATCAAACTCAC
196 ATCAAACTCAC
* * * * * *
158742 GCTTGATATGAGCAAATCTTCGAACCCCAACTTCCTGATGAGATACTGATAAGTAGGTCGAAGTA
1 GCTCGATGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCA
* * * * * *
158807 ATAAAATGGTTAGCTTCCTGATAAGATACTGAGAAGGGGATCAAATTCGTGTTCTTGATGAGATA
66 ATAAAATAGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATA
* * *
158872 CAGAGAAGCGGATTGAAACAAACGATGCAGTCATCTTCCTGACGAGATACTGAGAAGAAGACCAA
131 CAGAGAAGCGGATTGAAACAAGCGATGCAGTCATCTTCCTGATGAGATACTAAGAAGAAGACCAA
158937 ATCAAACTCAC
196 ATCAAACTCAC
* * *
158948 GCTCGATGTGAGCAAATCTTCGAACCCCAGATTCCTGATGAAATACTGAGAAGCATGTCGAAGCA
1 GCTCGATGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCA
* * * * * *
159013 ATAAAATAGTTAGCTTCCTAATGAGATACGGAGAAGTGAACCAAATCCGTCTTCCTGATGAAACA
66 ATAAAATAGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATA
* * * * * * *
159078 CAGGGAAGTGGATT-AAGACAAGTGATCCGGTCATCTTCCTGATGAAATACTAAGAAGTAGACCA
131 CAGAGAAGCGGATTGAA-ACAAGCGATGCAGTCATCTTCCTGATGAGATACTAAGAAGAAGACCA
159142 AATCAA
195 AATCAA
159148 CGACCCCAAA
Statistics
Matches: 540, Mismatches: 71, Indels: 2
0.88 0.12 0.00
Matches are distributed among these distances:
205 2 0.00
206 538 1.00
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.23
Consensus pattern (206 bp):
GCTCGATGTGAGCAAATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCA
ATAAAATAGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATA
CAGAGAAGCGGATTGAAACAAGCGATGCAGTCATCTTCCTGATGAGATACTAAGAAGAAGACCAA
ATCAAACTCAC
Found at i:159470 original size:6 final size:6
Alignment explanation
Indices: 159450--159542 Score: 72
Period size: 6 Copynumber: 16.0 Consensus size: 6
159440 CCCAACTCAT
*
159450 TTTAAA TTT-AT TTTAAA TTTAAA TTT--A TTCTAGAA TTTAAA TTT-AA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TT-TA-AA TTTAAA TTTAAA
* * * *
159496 TTTAAG TTTAAG TTTATA TTTAAA TTTAAA ATT--A TTATAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TT-TAAA TTTAAA
159543 AATGAATAAA
Statistics
Matches: 70, Mismatches: 8, Indels: 18
0.73 0.08 0.19
Matches are distributed among these distances:
4 5 0.07
5 11 0.16
6 46 0.66
7 5 0.07
8 3 0.04
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (6 bp):
TTTAAA
Found at i:159489 original size:35 final size:35
Alignment explanation
Indices: 159450--159542 Score: 116
Period size: 35 Copynumber: 2.7 Consensus size: 35
159440 CCCAACTCAT
159450 TTTAAATTTATTTTAAATTTAAATTTAT-TCTAGAA
1 TTTAAATTTATTTTAAATTTAAATTTATATCTA-AA
* * * *
159485 TTTAAATTTAATTTAAGTTTAAGTTTATATTTAAA
1 TTTAAATTTATTTTAAATTTAAATTTATATCTAAA
* *
159520 TTTAAAATTATTATAAATTTAAA
1 TTTAAATTTATTTTAAATTTAAA
159543 AATGAATAAA
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
35 45 0.94
36 3 0.06
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (35 bp):
TTTAAATTTATTTTAAATTTAAATTTATATCTAAA
Found at i:159543 original size:17 final size:17
Alignment explanation
Indices: 159450--159542 Score: 114
Period size: 17 Copynumber: 5.4 Consensus size: 17
159440 CCCAACTCAT
159450 TTTAAATTTATTTTAAA
1 TTTAAATTTATTTTAAA
*
159467 TTTAAATTTATTCTAGAA
1 TTTAAATTTATTTTA-AA
* *
159485 TTTAAATTTAATTTAAG
1 TTTAAATTTATTTTAAA
*
159502 TTTAAGTTTATATTTAAA
1 TTTAAATTTAT-TTTAAA
* *
159520 TTTAAAATTATTATAAA
1 TTTAAATTTATTTTAAA
159537 TTTAAA
1 TTTAAA
159543 AATGAATAAA
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
17 35 0.55
18 29 0.45
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (17 bp):
TTTAAATTTATTTTAAA
Found at i:160196 original size:3 final size:3
Alignment explanation
Indices: 160160--160184 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
160150 AATGTGCTAT
160160 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
160185 TTTTAATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:161277 original size:28 final size:28
Alignment explanation
Indices: 161245--161303 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
161235 AACTATCCAA
*
161245 AAATTATA-TTTTAACACTCAAACTTCTC
1 AAATTATATTTTTAAC-CCCAAACTTCTC
*
161273 AAATTATATTTTTAACCCCAAACTTTTC
1 AAATTATATTTTTAACCCCAAACTTCTC
161301 AAA
1 AAA
161304 AATTACATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 21 0.75
29 7 0.25
ACGTcount: A:0.41, C:0.20, G:0.00, T:0.39
Consensus pattern (28 bp):
AAATTATATTTTTAACCCCAAACTTCTC
Found at i:161314 original size:29 final size:29
Alignment explanation
Indices: 161242--161555 Score: 148
Period size: 29 Copynumber: 10.7 Consensus size: 29
161232 CTAAACTATC
* * * *
161242 CAAAAATTATATTTTAACACTCAAACTTCT
1 CAAAAATTACATTTTAAC-CCCGAACTTTT
* *
161272 C--AAATTATATTTTTAACCCCAAACTTTT
1 CAAAAATTACA-TTTTAACCCCGAACTTTT
* *
161300 CAAAAATTACATTTTTACCCTTGAAC-TTT
1 CAAAAATTACATTTTAACCC-CGAACTTTT
* * * *
161329 CTAAAATTCCATTTTGACCCCGAATTTTT
1 CAAAAATTACATTTTAACCCCGAACTTTT
* * *
161358 CGAAAATTACATTTTTACCTTCGAAC-TTT
1 CAAAAATTACATTTTAACC-CCGAACTTTT
* * * *
161387 CCAAAATTCCATTTTGACCCCCAA-TTTGT
1 CAAAAATTACATTTTAACCCCGAACTTT-T
*
161416 CTAAAAATTACCATTTT-ACCCTCGAAC-TTC
1 C-AAAAATTA-CATTTTAACCC-CGAACTTTT
* *
161446 CAAAAATTCCATTTTTAATCCC-AA-TTTAT
1 CAAAAATTACA-TTTTAACCCCGAACTTT-T
* * *
161475 CCAAAAAATACCATTTTAACCCCAAACTTCT
1 -CAAAAATTA-CATTTTAACCCCGAACTTTT
* * * *
161506 -GAAAATTCCATTTTCAACCTCG-ATTTTT
1 CAAAAATTACATTTT-AACCCCGAACTTTT
161534 CCAAAAATTATCATTTT-ACCCC
1 -CAAAAATTA-CATTTTAACCCC
161556 TGGATGTCTA
Statistics
Matches: 218, Mismatches: 42, Indels: 49
0.71 0.14 0.16
Matches are distributed among these distances:
28 42 0.19
29 101 0.46
30 51 0.23
31 22 0.10
32 2 0.01
ACGTcount: A:0.34, C:0.25, G:0.03, T:0.38
Consensus pattern (29 bp):
CAAAAATTACATTTTAACCCCGAACTTTT
Found at i:161452 original size:59 final size:57
Alignment explanation
Indices: 161240--161554 Score: 262
Period size: 59 Copynumber: 5.4 Consensus size: 57
161230 CCCTAAACTA
* * * ** * *
161240 TCCAAAAATTATATTTTAACACTCAAACTTCTC-AAATTATATTTTTAACCCCAAACTTT
1 TCCAAAAATTACATTTT-ACCCTCGAACTTC-CAAAATTCCATTTTGAACCCC-AATTTT
* *
161299 T-CAAAAATTACATTTTTACCCTTGAACTTTCTAAAATTCCATTTTG-ACCCCGAATTTT
1 TCCAAAAATTACA-TTTTACCCTCGAAC-TTCCAAAATTCCATTTTGAACCCC-AATTTT
* * * *
161357 T-CGAAAATTACATTTTTACCTTCGAACTTTCCAAAATTCCATTTTGACCCCCAATTTG
1 TCCAAAAATTACA-TTTTACCCTCGAAC-TTCCAAAATTCCATTTTGAACCCCAATTTT
* * * *
161415 TCTAAAAATTACCATTTTACCCTCGAACTTCCAAAAATTCCATTTTTAATCCCAATTTA
1 TCCAAAAATTA-CATTTTACCCTCGAACTTCC-AAAATTCCATTTTGAACCCCAATTTT
* * * * * *
161474 TCCAAAAAATACCATTTTAACCC-CAAACTTCTGAAAATTCCATTTTCAACCTCGATTTT
1 TCCAAAAATTA-CATTTT-ACCCTCGAACTTC-CAAAATTCCATTTTGAACCCCAATTTT
161533 TCCAAAAATTATCATTTTACCC
1 TCCAAAAATTA-CATTTTACCC
161555 CTGGATGTCT
Statistics
Matches: 213, Mismatches: 34, Indels: 19
0.80 0.13 0.07
Matches are distributed among these distances:
58 83 0.39
59 124 0.58
60 6 0.03
ACGTcount: A:0.34, C:0.25, G:0.03, T:0.38
Consensus pattern (57 bp):
TCCAAAAATTACATTTTACCCTCGAACTTCCAAAATTCCATTTTGAACCCCAATTTT
Found at i:163523 original size:59 final size:59
Alignment explanation
Indices: 163460--163583 Score: 223
Period size: 59 Copynumber: 2.1 Consensus size: 59
163450 TAGCTATATG
* *
163460 ATGATTTCAAAAATTCCAATTTTATAATTTTAACTAAAATCTCGTTTATTTTTTACATA
1 ATGATTTCAAAAATTCCAATTTTATAATTTTAACCAAAATCTCATTTATTTTTTACATA
163519 ATGATTTCAAAAATTCCAATTTTATAATTTTAACCAAAATCTCATTTATTTTTTACATA
1 ATGATTTCAAAAATTCCAATTTTATAATTTTAACCAAAATCTCATTTATTTTTTACATA
163578 AT-ATTT
1 ATGATTT
163584 TATATCATCG
Statistics
Matches: 63, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
58 4 0.06
59 59 0.94
ACGTcount: A:0.38, C:0.12, G:0.02, T:0.48
Consensus pattern (59 bp):
ATGATTTCAAAAATTCCAATTTTATAATTTTAACCAAAATCTCATTTATTTTTTACATA
Found at i:173864 original size:18 final size:18
Alignment explanation
Indices: 173843--173890 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
173833 ATTAAATACT
173843 TTTTTAATTTTAATAAAA
1 TTTTTAATTTTAATAAAA
* * *
173861 TTTTCAATTTTTATACAA
1 TTTTTAATTTTAATAAAA
*
173879 TATTTTGATTTT
1 T-TTTTAATTTT
173891 TTTAATTTAT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
18 16 0.67
19 8 0.33
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.60
Consensus pattern (18 bp):
TTTTTAATTTTAATAAAA
Found at i:181014 original size:35 final size:34
Alignment explanation
Indices: 180963--181034 Score: 126
Period size: 35 Copynumber: 2.1 Consensus size: 34
180953 ATTGTTAAAT
180963 ATAAGAAAAAAATCGAACTAACTAATTGAATTGA
1 ATAAGAAAAAAATCGAACTAACTAATTGAATTGA
*
180997 ATAAGAAAAAAAATCGAACTAACTAGTTGAATTGA
1 ATAAG-AAAAAAATCGAACTAACTAATTGAATTGA
181032 ATA
1 ATA
181035 TTGGTGCCTA
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
34 5 0.14
35 31 0.86
ACGTcount: A:0.56, C:0.08, G:0.12, T:0.24
Consensus pattern (34 bp):
ATAAGAAAAAAATCGAACTAACTAATTGAATTGA
Found at i:185949 original size:35 final size:34
Alignment explanation
Indices: 185901--185995 Score: 104
Period size: 35 Copynumber: 2.7 Consensus size: 34
185891 CTTCATTTAG
*
185901 TTAT-TTTTATATTATAAATACTTTTTTTTTCTATT
1 TTATCTTTT-TATTATAAATA-TTTTTTTTTCCATT
* *
185936 TTCA-CTTTTTATTATAAATATCTTATTTTCCATT
1 TT-ATCTTTTTATTATAAATATTTTTTTTTCCATT
*
185970 TTATTCTTTTTATTATGAATATTTTT
1 TTA-TCTTTTTATTATAAATATTTTT
185996 CATTTTGTAT
Statistics
Matches: 50, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
33 1 0.02
34 13 0.26
35 31 0.62
36 5 0.10
ACGTcount: A:0.25, C:0.08, G:0.01, T:0.65
Consensus pattern (34 bp):
TTATCTTTTTATTATAAATATTTTTTTTTCCATT
Found at i:187609 original size:23 final size:22
Alignment explanation
Indices: 187583--187631 Score: 53
Period size: 23 Copynumber: 2.2 Consensus size: 22
187573 TTTAAAATAT
187583 TAATCATGTTAAACAATAAATG
1 TAATCATGTTAAACAATAAATG
** * *
187605 ATAATTTTTTTAAACACTAAATG
1 -TAATCATGTTAAACAATAAATG
187628 TAAT
1 TAAT
187632 TTTATTAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
22 4 0.18
23 18 0.82
ACGTcount: A:0.47, C:0.08, G:0.06, T:0.39
Consensus pattern (22 bp):
TAATCATGTTAAACAATAAATG
Found at i:187634 original size:22 final size:23
Alignment explanation
Indices: 187591--187640 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
187581 ATTAATCATG
*
187591 TTAAACAATAAATGATAATTTTT
1 TTAAACAATAAATGATAATTTTA
*
187614 TTAAACACTAAATG-TAATTTTA
1 TTAAACAATAAATGATAATTTTA
187636 TTAAA
1 TTAAA
187641 ACTTGATATT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 12 0.48
23 13 0.52
ACGTcount: A:0.48, C:0.06, G:0.04, T:0.42
Consensus pattern (23 bp):
TTAAACAATAAATGATAATTTTA
Found at i:190425 original size:21 final size:22
Alignment explanation
Indices: 190386--190426 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
190376 ACATAAAAAA
**
190386 TTAAAAATATTTATTTTTAAAT
1 TTAAAAATATTTAAGTTTAAAT
190408 TTAAAAAT-TTTAAGTTTAA
1 TTAAAAATATTTAAGTTTAA
190427 TCATTGAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (22 bp):
TTAAAAATATTTAAGTTTAAAT
Found at i:196319 original size:15 final size:16
Alignment explanation
Indices: 196299--196330 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
196289 ACATGTGTTT
196299 TTTTAATATTT-ATTA
1 TTTTAATATTTAATTA
196314 TTTTAATATTTAATTA
1 TTTTAATATTTAATTA
196330 T
1 T
196331 ATTTTTATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (16 bp):
TTTTAATATTTAATTA
Found at i:197687 original size:16 final size:18
Alignment explanation
Indices: 197655--197687 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
197645 AACAAGTGCA
197655 CATATTATTACTTTTATG
1 CATATTATTACTTTTATG
197673 CATATT-TTA-TTTTAT
1 CATATTATTACTTTTAT
197688 ACTATTTGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 3 0.20
18 6 0.40
ACGTcount: A:0.27, C:0.09, G:0.03, T:0.61
Consensus pattern (18 bp):
CATATTATTACTTTTATG
Found at i:199406 original size:6 final size:6
Alignment explanation
Indices: 199395--199477 Score: 57
Period size: 6 Copynumber: 14.5 Consensus size: 6
199385 TGCCCAACAG
* * * *
199395 AATTTA AATTT- ATTTTA AAATTA AATTT- ATTTTA AGTTTA AATTT-
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA
* * * * *
199440 ACTTAA AATTTA AATTT- ACTATA AATTTA AGTTTA AAT
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AAT
199478 CTATTTAAAT
Statistics
Matches: 56, Mismatches: 17, Indels: 8
0.69 0.21 0.10
Matches are distributed among these distances:
5 14 0.25
6 42 0.75
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (6 bp):
AATTTA
Found at i:199458 original size:17 final size:17
Alignment explanation
Indices: 199395--199474 Score: 83
Period size: 17 Copynumber: 4.7 Consensus size: 17
199385 TGCCCAACAG
*
199395 AATTTAAATTTATTTTAA
1 AATTTAAATTTA-CTTAA
* *
199413 AA-TTAAATTTATTTTA
1 AATTTAAATTTACTTAA
*
199429 AGTTTAAATTTACTTAA
1 AATTTAAATTTACTTAA
199446 AATTTAAATTTAC-TATA
1 AATTTAAATTTACTTA-A
*
199463 AATTTAAGTTTA
1 AATTTAAATTTA
199475 AATCTATTTA
Statistics
Matches: 54, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
16 7 0.13
17 45 0.83
18 2 0.04
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.51
Consensus pattern (17 bp):
AATTTAAATTTACTTAA
Found at i:199469 original size:34 final size:34
Alignment explanation
Indices: 199395--199474 Score: 99
Period size: 34 Copynumber: 2.4 Consensus size: 34
199385 TGCCCAACAG
* * *
199395 AATTTAAATTTATTTTAAAATTAAATTTATTTTA
1 AATTTAAATTTATCTTAAAATTAAATTTACTATA
*
199429 AGTTTAAATTTA-CTTAAAATTTAAATTTACTATA
1 AATTTAAATTTATCTTAAAA-TTAAATTTACTATA
*
199463 AATTTAAGTTTA
1 AATTTAAATTTA
199475 AATCTATTTA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
33 6 0.15
34 33 0.85
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.51
Consensus pattern (34 bp):
AATTTAAATTTATCTTAAAATTAAATTTACTATA
Found at i:201380 original size:30 final size:29
Alignment explanation
Indices: 201310--201539 Score: 223
Period size: 30 Copynumber: 7.8 Consensus size: 29
201300 GAAGGTCCCT
* * *
201310 AAACTATCTAAAAATTACATTTTTACCCC-
1 AAACT-TCCAAAAATTCCATTTTGACCCCA
201339 AAACTTCCAAAAATTCCATTTTCGACCCCA
1 AAACTTCCAAAAATTCCATTTT-GACCCCA
* * *
201369 AAACTTTCAAAAATTCCATTTTCACCTTC-
1 AAACTTCCAAAAATTCCATTTTGACC-CCA
*
201398 AAACTTCCAAAAATTCCATTTTTGACCCTA
1 AAACTTCCAAAAATTCCA-TTTTGACCCCA
* *
201428 AAACTTCCAAAACTTCCATTTT-ACCCCC
1 AAACTTCCAAAAATTCCATTTTGACCCCA
* * *
201456 GAACTCCCAAAAATTCCATTTTTGACACCA
1 AAACTTCCAAAAATTCCA-TTTTGACCCCA
* * *
201486 AAACTTTCAAAAATTCCAATTTTGACCTCG
1 AAACTTCCAAAAATTCC-ATTTTGACCCCA
* *
201516 AAACTTTCAAAAATTATCATTTTG
1 AAACTTCCAAAAATT-CCATTTTG
201540 CCCTCGGATG
Statistics
Matches: 167, Mismatches: 25, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
28 34 0.20
29 38 0.23
30 93 0.56
31 2 0.01
ACGTcount: A:0.37, C:0.27, G:0.03, T:0.33
Consensus pattern (29 bp):
AAACTTCCAAAAATTCCATTTTGACCCCA
Found at i:201404 original size:59 final size:57
Alignment explanation
Indices: 201310--201530 Score: 262
Period size: 59 Copynumber: 3.7 Consensus size: 57
201300 GAAGGTCCCT
* * *
201310 AAACTATCTAAAAATTACATTTTTACCCCAAACTTCCAAAAATTCCATTTTCGACCCCA
1 AAACTTTC-AAAAATTCCA-TTTTACCCCAAACTTCCAAAAATTCCATTTTTGACCCCA
* *
201369 AAACTTTCAAAAATTCCATTTTCACCTTCAAACTTCCAAAAATTCCATTTTTGACCCTA
1 AAACTTTCAAAAATTCCATTTT-ACC-CCAAACTTCCAAAAATTCCATTTTTGACCCCA
* * * * *
201428 AAACTTCCAAAACTTCCATTTTACCCCCGAACTCCCAAAAATTCCATTTTTGACACCA
1 AAACTTTCAAAAATTCCATTTTA-CCCCAAACTTCCAAAAATTCCATTTTTGACCCCA
* *
201486 AAACTTTCAAAAATTCCAATTTTGACCTCGAAACTTTCAAAAATT
1 AAACTTTCAAAAATTCC-ATTTT-ACC-CCAAACTTCCAAAAATT
201531 ATCATTTTGC
Statistics
Matches: 138, Mismatches: 18, Indels: 11
0.83 0.11 0.07
Matches are distributed among these distances:
57 4 0.03
58 55 0.40
59 65 0.47
60 14 0.10
ACGTcount: A:0.38, C:0.28, G:0.03, T:0.32
Consensus pattern (57 bp):
AAACTTTCAAAAATTCCATTTTACCCCAAACTTCCAAAAATTCCATTTTTGACCCCA
Found at i:203452 original size:29 final size:30
Alignment explanation
Indices: 203395--203475 Score: 85
Period size: 31 Copynumber: 2.7 Consensus size: 30
203385 AAACTGAATC
*
203395 AAATCAAAATTTCATATATAAAATCACACA
1 AAATCAAAACTTCATATATAAAATCACACA
* * *
203425 AAATCAAAACTT-ATATATCACATTACACA
1 AAATCAAAACTTCATATATAAAATCACACA
*
203454 TCAAATTAAAA-TTCATATATAA
1 --AAATCAAAACTTCATATATAA
203476 TTTTAATATT
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
29 14 0.33
30 13 0.31
31 15 0.36
ACGTcount: A:0.54, C:0.16, G:0.00, T:0.30
Consensus pattern (30 bp):
AAATCAAAACTTCATATATAAAATCACACA
Found at i:236910 original size:2 final size:2
Alignment explanation
Indices: 236903--236929 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
236893 CCCTTTTTCT
236903 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
236930 TTGAGATATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:244915 original size:72 final size:72
Alignment explanation
Indices: 244816--244964 Score: 291
Period size: 72 Copynumber: 2.1 Consensus size: 72
244806 AATTCACATT
244816 AAAAA-ACATAAAATGTTATGAATCTCTTTCTCACTTCTTCCATTGGGGCAACCTTTGAACAACA
1 AAAAATACATAAAATGTTATGAATCTCTTTCTCACTTCTTCCATTGGGGCAACCTTTGAACAACA
244880 ACCTTAA
66 ACCTTAA
244887 AAAAATACATAAAATGTTATGAATCTCTTTCTCACTTCTTCCATTGGGGCAACCTTTGAACAACA
1 AAAAATACATAAAATGTTATGAATCTCTTTCTCACTTCTTCCATTGGGGCAACCTTTGAACAACA
244952 ACCTTAA
66 ACCTTAA
244959 AAAAAT
1 AAAAAT
244965 CAACACATCA
Statistics
Matches: 77, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
71 5 0.06
72 72 0.94
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.31
Consensus pattern (72 bp):
AAAAATACATAAAATGTTATGAATCTCTTTCTCACTTCTTCCATTGGGGCAACCTTTGAACAACA
ACCTTAA
Found at i:245612 original size:13 final size:13
Alignment explanation
Indices: 245594--245642 Score: 53
Period size: 13 Copynumber: 3.5 Consensus size: 13
245584 ACGATATTAA
245594 TAAAAAATTTATG
1 TAAAAAATTTATG
* *
245607 TAAAAAATATATT
1 TAAAAAATTTATG
245620 TATAAATAATTTATG
1 TA-AAA-AATTTATG
245635 TAACAAAA
1 TAA-AAAA
245643 GAAATTTTCG
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
13 13 0.45
14 6 0.21
15 10 0.34
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.37
Consensus pattern (13 bp):
TAAAAAATTTATG
Found at i:245625 original size:28 final size:29
Alignment explanation
Indices: 245587--245642 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 29
245577 CATATTCACG
245587 ATATTAATAAAAAATTTATGTAA-AAAAT
1 ATATTAATAAAAAATTTATGTAACAAAAT
* *
245615 ATATTTATAAATAATTTATGTAACAAAA
1 ATATTAATAAAAAATTTATGTAACAAAA
245643 GAAATTTTCG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 21 0.84
29 4 0.16
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.38
Consensus pattern (29 bp):
ATATTAATAAAAAATTTATGTAACAAAAT
Found at i:252174 original size:20 final size:20
Alignment explanation
Indices: 252149--252190 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
252139 ATATTTGAAA
252149 TGAAATGAAAAGCTTCATAC
1 TGAAATGAAAAGCTTCATAC
252169 TGAAATGAAAAGCTTCATAC
1 TGAAATGAAAAGCTTCATAC
252189 TG
1 TG
252191 CTATTTGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.43, C:0.14, G:0.17, T:0.26
Consensus pattern (20 bp):
TGAAATGAAAAGCTTCATAC
Found at i:260528 original size:4 final size:4
Alignment explanation
Indices: 260521--260555 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
260511 TTGGATGATT
260521 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGT
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGT
260556 TAACAAAGGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.23, C:0.00, G:0.26, T:0.51
Consensus pattern (4 bp):
TGTA
Done.