Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000111.1 Kokia drynarioides strain JFW-HI SEQ_110749, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4729
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.27


Found at i:67 original size:29 final size:30

Alignment explanation


    Indices: 1--84  Score: 116
    Period size: 30  Copynumber: 2.8  Consensus size: 30

                           *       *      
          1 CCCATTTTT-ACCCCCAAACTTCTAAAAAT
          1 CCCATTTTTAACCCCAAAACTTCCAAAAAT

                          *            *  
         30 CCCATTTTTAACCCTAAAACTTCCAAAGAT
          1 CCCATTTTTAACCCCAAAACTTCCAAAAAT

                           *         
         60 CCCATTTTTAACCCCGAAACTTCCA
          1 CCCATTTTTAACCCCAAAACTTCCA

         85 TTTCATCCCC


Statistics
Matches: 48,  Mismatches: 6, Indels: 1
        0.87            0.11        0.02

Matches are distributed among these distances:
  29    9  0.19
  30   39  0.81

ACGTcount: A:0.33, C:0.35, G:0.02, T:0.30


Consensus pattern (30 bp):   
CCCATTTTTAACCCCAAAACTTCCAAAAAT

Found at i:3584 original size:19 final size:19

Alignment explanation


    Indices: 3560--3599  Score: 80
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       3550 CAAATCTGCG

                               
       3560 GAGTAGCTGACCACGTGCA
          1 GAGTAGCTGACCACGTGCA

                               
       3579 GAGTAGCTGACCACGTGCA
          1 GAGTAGCTGACCACGTGCA

              
       3598 GA
          1 GA

       3600 CCCTGGCAGT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   21  1.00

ACGTcount: A:0.28, C:0.25, G:0.33, T:0.15


Consensus pattern (19 bp):   
GAGTAGCTGACCACGTGCA
Done.