genome.fa.s11107.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011107.1 Kokia drynarioides strain JFW-HI SEQ_126080, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112033

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
232--301	16	4.4	17	82	10	85	30	27	2	40	1.71
242--302	32	1.9	32	96	0	113	31	26	1	40	1.66
241--303	16	3.9	16	89	0	99	30	28	1	39	1.66
8829--9058	115	2.0	114	98	0	442	26	23	10	40	1.85
11908--12136	29	7.8	28	73	14	133	37	3	22	36	1.71
11938--12178	29	8.2	28	69	15	123	38	4	23	34	1.74
11903--12157	59	4.3	59	80	6	261	37	3	23	35	1.73
11909--12188	88	3.2	87	78	9	273	37	3	22	35	1.73
11916--12191	59	4.7	56	79	11	220	37	3	22	35	1.73
13244--13312	3	21.7	3	77	11	57	39	2	1	56	1.23
13231--13280	26	1.9	26	83	0	64	42	2	0	56	1.11
13245--13312	16	4.7	15	68	17	54	39	2	1	55	1.24
13567--13595	14	2.0	15	93	6	51	20	6	20	51	1.70
13608--13680	11	6.9	11	72	19	57	56	2	1	39	1.22
13606--13686	6	14.0	6	76	12	80	54	2	1	41	1.21
13607--13687	23	3.5	22	78	8	65	55	2	1	40	1.21
13606--13687	17	4.8	17	80	7	85	54	2	1	41	1.21
14016--14394	206	1.8	206	85	1	535	24	23	18	33	1.97
17264--17349	43	2.0	43	100	0	172	25	23	11	39	1.88
17264--17330	22	3.1	22	64	20	59	26	23	10	38	1.87
17628--17721	48	2.0	48	100	0	188	28	20	19	31	1.97
22449--22489	21	2.0	21	85	0	55	14	24	4	56	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26430--26531	29	3.6	27	75	13	89	37	3	22	36	1.73
26440--26679	58	4.1	58	79	11	190	37	4	21	36	1.73
26481--27007	29	18.0	29	70	12	195	36	3	24	35	1.74
26481--26621	60	2.4	60	86	2	196	39	4	19	37	1.71
26589--27031	29	15.2	29	76	8	384	35	4	25	35	1.75
26607--27038	116	3.7	116	88	5	529	35	3	25	34	1.75
28050--28151	16	6.9	15	73	13	86	44	0	1	52	1.18
28866--28894	14	2.0	15	93	6	51	20	6	20	51	1.70
28905--28986	17	4.8	17	84	1	74	56	2	1	40	1.20
28919--28974	23	2.4	23	87	0	85	55	3	0	41	1.17
28908--28985	40	1.9	41	92	2	131	57	2	1	38	1.20
28905--28985	6	14.0	6	73	12	71	55	2	1	40	1.21
28925--28986	11	6.0	11	68	21	53	58	3	0	38	1.15
30576--30613	16	2.4	16	86	8	51	73	2	0	23	0.95
31695--31729	18	1.9	18	88	0	52	37	2	2	57	1.29
31970--32077	56	2.0	55	80	8	123	45	8	8	37	1.65
36513--36547	16	2.2	16	89	0	52	40	5	20	34	1.76
37176--37210	18	1.9	18	88	0	52	42	0	2	54	1.15
46960--47068	43	2.5	43	87	0	146	27	27	15	29	1.96
46960--47089	43	3.0	43	82	2	136	27	26	16	28	1.97
52207--52360	42	3.7	41	72	14	127	18	25	16	39	1.91
55613--55953	52	6.6	52	82	2	343	27	15	22	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55614--55953	103	3.3	102	82	1	376	27	15	22	34	1.94
62240--62281	21	2.0	22	95	4	77	30	14	21	33	1.93
65205--65244	17	2.4	17	95	0	71	12	22	32	32	1.91
69354--69402	21	2.3	22	75	10	57	34	14	22	28	1.93
72545--72637	24	3.8	24	89	1	123	30	25	21	22	1.99
77252--77340	24	3.7	24	87	1	106	31	25	19	23	1.98
80627--80668	9	4.6	9	84	3	57	71	2	0	26	0.98
81299--81323	7	3.6	7	100	0	50	48	0	0	52	1.00
81891--81929	20	2.0	20	100	0	78	23	5	30	41	1.76
85063--85101	16	2.5	15	84	12	51	58	7	0	33	1.26
85654--85684	9	3.3	9	95	4	53	83	3	0	12	0.75
85858--85883	11	2.4	11	100	0	52	0	7	0	92	0.39
86236--86272	20	1.9	20	88	5	58	37	0	0	62	0.96
92705--92774	29	2.3	32	79	18	96	47	21	5	25	1.73
92528--92853	172	1.9	173	83	1	420	38	19	13	27	1.89
94521--94553	14	2.4	14	90	5	50	48	6	0	45	1.27
102694--102759	31	2.1	31	83	5	80	33	10	16	39	1.83
103585--103636	27	1.9	27	88	0	77	57	1	3	36	1.28
104379--104454	27	2.9	26	70	12	66	32	1	5	60	1.27
104672--104716	21	2.1	22	83	4	56	55	4	0	40	1.20
112003--112033	2	15.5	2	100	0	62	48	0	0	51	1.00

Tables:   1

The End!