genome.fa.s11117.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011117.1 Kokia drynarioides strain JFW-HI SEQ_126090, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  482593

Tables:   1   

This is table  1  of  1  ( 117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2224--2333	30	3.6	31	82	7	127	37	20	2	39	1.67
9692--9903	80	2.7	79	86	4	291	32	21	7	39	1.80
10671--10789	41	2.9	40	85	3	150	34	21	29	15	1.93
10664--10819	41	3.8	41	79	4	120	33	21	26	18	1.96
15219--15275	29	1.9	29	85	3	78	38	10	12	38	1.77
15346--15401	29	1.9	29	85	0	76	46	1	1	50	1.22
15450--15506	29	1.9	30	85	3	80	54	8	1	35	1.42
15447--15527	31	2.7	29	80	5	90	50	9	2	37	1.49
27095--27147	23	2.2	24	93	3	90	43	13	18	24	1.86
28557--28601	23	1.9	24	81	4	56	57	2	2	37	1.23
30498--30565	31	2.2	31	86	0	91	50	20	7	22	1.73
35850--35888	15	2.4	16	87	8	53	35	0	0	64	0.94
35837--35903	24	2.8	23	73	10	64	46	0	1	52	1.09
35868--35924	30	1.9	30	85	0	78	45	0	0	54	0.99
35858--35931	39	1.9	38	81	8	87	44	0	2	52	1.15
40231--40298	34	2.0	35	85	8	95	42	7	8	41	1.64
42109--42164	6	9.7	6	76	7	62	41	0	3	55	1.17
42099--42164	23	2.9	23	84	2	89	39	0	3	57	1.14
42098--42158	17	3.6	17	81	0	68	37	0	3	59	1.14
44033--44231	29	6.8	29	71	12	122	38	25	3	32	1.71
44068--44287	58	3.8	58	78	10	191	36	26	2	33	1.71
56002--56430	206	2.1	207	92	0	707	35	19	21	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56245--56604	168	2.1	168	88	1	524	36	20	21	21	1.95
57013--57085	6	12.7	6	77	8	80	42	1	2	53	1.23
57002--57096	17	5.2	17	73	15	82	38	2	2	56	1.23
57003--57085	23	3.7	23	83	4	98	40	1	2	55	1.21
57814--57901	15	5.7	15	75	14	72	53	2	2	42	1.26
57828--57902	3	24.0	3	80	8	60	54	1	2	41	1.23
57814--57855	18	2.3	18	88	8	59	52	2	0	45	1.13
57830--57893	29	2.3	26	84	12	83	53	1	3	42	1.26
57814--57902	19	4.4	20	75	13	85	53	2	2	41	1.25
58970--59307	29	11.5	29	80	9	364	35	27	2	34	1.71
58970--59307	59	5.8	58	84	4	392	35	27	2	34	1.71
58970--59299	88	3.8	84	83	9	385	36	27	2	33	1.71
59401--59465	28	2.3	29	86	5	96	40	27	6	26	1.80
59413--59475	28	2.2	28	85	2	81	33	26	7	31	1.85
67929--67961	16	2.1	16	94	5	59	36	12	6	45	1.66
70389--70617	70	3.8	58	78	14	207	44	25	6	24	1.77
70490--70698	70	3.0	70	94	1	366	41	25	11	21	1.86
89240--89312	29	2.5	28	80	8	83	35	5	12	46	1.65
89240--89316	30	2.6	29	82	10	84	35	6	11	46	1.66
89604--89631	2	14.0	2	100	0	56	50	0	0	50	1.00
109277--109330	23	2.3	23	87	0	72	31	24	24	20	1.98
114314--114371	23	2.5	23	88	0	80	29	24	22	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119589--119622	6	5.7	6	100	0	68	32	32	17	17	1.94
121178--121214	2	18.5	2	94	0	56	51	5	0	43	1.24
130160--130195	3	12.0	3	100	0	72	33	0	0	66	0.92
131566--131886	59	5.5	59	82	7	332	32	3	29	34	1.74
131571--131890	29	10.9	29	80	8	310	32	3	30	34	1.73
132988--133123	3	42.7	3	69	13	67	34	5	1	58	1.29
132996--133068	13	5.8	13	83	4	87	34	4	1	60	1.24
132996--133123	13	10.5	13	73	13	74	35	4	1	58	1.28
132997--133123	16	8.3	15	69	18	68	35	4	1	58	1.29
133853--133906	17	3.1	17	81	2	54	46	3	1	48	1.30
135396--135437	21	2.0	22	85	4	59	61	0	7	30	1.22
145617--145674	30	1.9	31	86	10	84	41	15	5	37	1.70
165679--165719	4	10.2	4	94	0	73	24	2	26	46	1.65
167050--167198	73	2.0	73	94	0	262	40	18	14	26	1.89
168650--168713	32	2.0	31	82	8	76	56	3	4	35	1.36
172503--172556	16	3.4	16	78	16	51	25	9	20	44	1.81
177985--178087	52	2.0	50	83	3	125	65	4	7	22	1.38
180089--180189	48	2.1	50	81	7	118	18	31	14	34	1.92
180195--180643	98	4.6	98	84	3	539	19	23	17	39	1.92
180089--180643	49	11.4	49	70	6	306	19	25	16	38	1.93
180135--180643	195	2.6	196	84	3	571	20	24	16	38	1.92
183547--183582	17	2.1	18	89	5	56	44	0	11	44	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
188703--188762	29	2.2	27	88	8	86	46	0	6	46	1.29
190300--190411	56	2.0	56	96	0	206	41	15	13	29	1.85
192718--192868	75	2.0	75	88	5	225	33	16	19	30	1.94
192911--193010	48	2.1	48	90	0	155	38	18	24	20	1.93
201147--201176	2	15.0	2	92	0	51	53	0	0	46	1.00
204226--204309	38	2.2	38	93	0	141	22	22	21	33	1.97
211972--212025	25	2.2	25	83	6	65	53	9	1	35	1.44
212892--213801	455	2.0	455	97	0	1705	32	13	13	40	1.83
220802--220826	3	8.3	3	100	0	50	68	0	0	32	0.90
222144--222190	3	15.7	3	90	0	76	34	4	0	61	1.15
229907--230052	67	2.2	64	89	7	213	39	0	2	56	1.18
229910--230052	63	2.3	62	84	12	193	39	0	2	56	1.19
234998--235052	18	3.0	18	91	2	92	58	16	18	7	1.60
235046--235102	8	7.9	7	78	18	55	78	0	21	0	0.74
235057--235103	6	8.0	6	79	11	53	78	0	21	0	0.75
235048--235102	22	2.5	22	85	5	76	80	0	20	0	0.72
235042--235101	28	2.1	29	90	9	97	78	0	21	0	0.75
235949--236158	49	4.3	50	71	7	162	35	16	28	19	1.93
236484--236524	20	2.0	20	86	9	57	29	21	9	39	1.86
236504--236628	40	3.1	40	76	6	128	32	24	16	27	1.96
236648--236694	24	2.0	24	91	4	78	14	21	25	38	1.92
243771--243843	35	2.1	35	100	0	146	46	16	12	24	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
243929--243957	11	2.5	12	88	11	51	34	13	0	51	1.42
256699--256728	3	10.0	3	100	0	60	0	66	0	33	0.92
282612--282720	55	2.0	55	88	0	164	37	15	20	26	1.92
282791--282820	16	1.9	15	93	6	51	53	10	6	30	1.60
287124--287155	10	3.0	11	90	9	57	75	6	18	0	1.01
294214--294675	244	1.9	242	82	4	581	41	17	11	28	1.84
302610--302660	27	1.9	26	84	4	66	21	1	3	72	1.11
323520--323546	2	13.5	2	100	0	54	48	0	0	51	1.00
328776--328800	2	12.5	2	100	0	50	48	0	0	52	1.00
332452--332480	6	5.0	6	95	4	51	82	0	0	17	0.66
334859--334883	4	6.2	4	100	0	50	24	76	0	0	0.80
352255--352286	2	16.0	2	100	0	64	50	0	0	50	1.00
353998--354023	3	8.7	3	100	0	52	30	0	0	69	0.89
370653--370695	2	21.5	2	100	0	86	0	48	0	51	1.00
374588--374619	2	16.0	2	100	0	64	50	0	0	50	1.00
384135--384213	27	2.9	27	86	0	104	22	37	22	16	1.93
388110--388160	25	2.0	25	100	0	102	39	19	21	19	1.93
389537--389641	51	2.1	51	85	3	140	37	13	11	38	1.81
397826--397864	18	2.3	17	86	8	53	7	12	5	74	1.20
413778--413836	30	1.9	32	86	6	86	44	10	0	45	1.37
413862--413900	2	19.5	2	100	0	78	48	0	0	51	1.00
416783--416841	21	2.7	21	80	15	57	62	3	3	30	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
446426--446455	13	2.3	13	100	0	60	46	13	23	16	1.82
450157--450208	24	2.2	23	80	12	61	40	1	9	48	1.47
459990--460019	1	30.0	1	100	0	60	100	0	0	0	0.00
469857--469922	23	2.8	24	84	9	100	37	22	27	12	1.90
474839--474864	5	5.2	5	100	0	52	80	0	0	19	0.71
480750--480801	24	2.2	24	82	0	59	17	38	5	38	1.74
480862--480913	26	2.0	26	96	0	95	32	23	7	36	1.83

Tables:   1

The End!