genome.fa.s11126.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011126.1 Kokia drynarioides strain JFW-HI SEQ_126099, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  150859

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1246--1307	18	3.4	18	80	4	54	16	12	25	45	1.83
1282--1325	18	2.4	18	84	0	61	20	6	25	47	1.74
3821--3879	24	2.5	24	80	0	73	18	32	3	45	1.66
4158--4202	21	2.2	21	84	4	56	51	0	4	44	1.21
5149--5265	55	2.1	55	87	9	177	13	10	22	53	1.69
11914--11945	16	2.0	16	93	0	55	53	0	3	43	1.16
12072--12155	30	2.7	31	83	10	100	48	2	1	47	1.22
12306--12344	20	2.0	20	85	5	53	41	0	7	51	1.31
18896--18929	2	17.0	2	100	0	68	50	50	0	0	1.00
19959--19987	15	1.9	15	100	0	58	31	13	0	55	1.39
21511--21647	30	4.6	29	77	7	105	35	24	2	37	1.70
29003--29047	17	2.6	17	89	0	72	82	2	15	0	0.77
29859--30618	50	15.3	50	77	3	602	34	16	30	18	1.93
30118--30618	99	5.1	98	79	6	490	34	16	30	18	1.93
29859--30590	149	4.9	149	78	4	582	34	16	30	18	1.93
30548--30691	72	2.0	73	83	1	182	34	15	29	19	1.93
30620--30774	50	3.1	50	78	5	154	34	17	28	20	1.95
30504--30740	122	1.9	122	85	3	325	35	15	29	18	1.92
30803--31016	40	5.3	40	74	13	181	32	26	15	24	1.96
30794--31015	78	2.8	79	89	2	311	32	26	16	24	1.96
31630--31700	35	2.0	35	91	0	115	30	45	8	15	1.76
32041--32066	11	2.4	11	100	0	52	65	7	0	26	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33063--33198	30	4.6	29	85	5	166	38	23	2	35	1.67
33063--33198	59	2.3	59	85	3	175	38	23	2	35	1.67
33063--33229	59	2.8	60	81	8	173	36	23	2	37	1.70
43217--43253	19	2.0	18	89	5	56	51	0	0	48	1.00
48450--48492	18	2.5	17	76	3	50	34	0	2	62	1.08
48967--48991	13	1.9	13	100	0	50	44	8	0	48	1.32
65870--65966	48	2.0	48	100	0	194	39	12	18	29	1.87
67430--68265	417	2.0	417	97	0	1584	33	11	15	40	1.83
71989--72092	50	2.1	50	100	0	208	26	16	15	41	1.88
74862--74975	58	2.0	58	87	3	167	31	14	21	33	1.92
76799--76947	9	15.7	9	69	19	63	26	2	4	65	1.25
76893--76946	19	2.9	18	81	18	58	27	5	1	64	1.26
77455--77488	17	1.9	18	88	5	52	79	2	0	17	0.86
88608--88650	21	2.0	22	86	4	61	27	20	18	32	1.96
93874--98416	744	6.0	750	83	6	5046	35	15	15	32	1.90
100006--100064	24	2.5	24	88	0	91	49	11	11	27	1.74
103146--103180	17	2.1	16	89	5	52	45	2	5	45	1.41
103530--103663	53	2.6	52	90	4	216	44	0	8	47	1.38
103649--103691	15	3.1	13	86	10	50	27	0	2	69	1.00
122859--122970	56	2.0	56	96	0	206	34	16	21	26	1.95
132404--132462	30	2.0	30	82	0	73	61	3	28	6	1.38
133509--133564	11	4.9	11	73	16	51	76	0	19	3	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137593--137830	52	4.6	52	83	2	165	34	26	14	24	1.94
144240--144309	18	3.9	18	84	3	97	22	22	20	34	1.97

Tables:   1

The End!