Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011131.1 Kokia drynarioides strain JFW-HI SEQ_126104, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 545426
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Warning! 70 characters in sequence are not A, C, G, or T
File 2 of 2
Found at i:441562 original size:16 final size:16
Alignment explanation
Indices: 441543--441573 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
441533 ATATTAATTT
*
441543 TATTTAATTTTAAAAA
1 TATTTAATATTAAAAA
441559 TATTTAATATTAAAA
1 TATTTAATATTAAAA
441574 TAATAAAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TATTTAATATTAAAAA
Found at i:444727 original size:29 final size:28
Alignment explanation
Indices: 444695--444774 Score: 88
Period size: 30 Copynumber: 2.7 Consensus size: 28
444685 ATTAGAAATT
444695 AAAATTATTTAATAATTTTATTATTTCAA
1 AAAATTATTTAATAATTTTA-TATTTCAA
* **
444724 AAAATTAATTTCAATAATTTGATATTTTTA
1 AAAATT-ATTT-AATAATTTTATATTTCAA
*
444754 AAAATAATTTTAATAATTTTA
1 AAAATTA-TTTAATAATTTTA
444775 AAATAATTTA
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
29 16 0.37
30 18 0.42
31 9 0.21
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.50
Consensus pattern (28 bp):
AAAATTATTTAATAATTTTATATTTCAA
Found at i:444757 original size:30 final size:30
Alignment explanation
Indices: 444695--444772 Score: 90
Period size: 29 Copynumber: 2.6 Consensus size: 30
444685 ATTAGAAATT
*
444695 AAAATT-ATTTAATAATTTTATTATTTCAA
1 AAAATTAATTTAATAATTTGATTATTTCAA
**
444724 AAAATTAATTTCAATAATTTGA-TATTTTTA
1 AAAATTAATTT-AATAATTTGATTATTTCAA
444754 AAAA-TAATTTTAATAATTT
1 AAAATTAA-TTTAATAATTT
444773 TAAAATAATT
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
29 17 0.40
30 17 0.40
31 9 0.21
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.50
Consensus pattern (30 bp):
AAAATTAATTTAATAATTTGATTATTTCAA
Found at i:444775 original size:21 final size:20
Alignment explanation
Indices: 444736--444783 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
444726 AATTAATTTC
* *
444736 AATAA-TTTGATATTTTTAAA
1 AATAATTTTAATAATTTT-AA
444756 AATAATTTTAATAATTTTAA
1 AATAATTTTAATAATTTTAA
444776 AATAATTT
1 AATAATTT
444784 ATTGATGTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 15 0.60
21 10 0.40
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (20 bp):
AATAATTTTAATAATTTTAA
Found at i:445836 original size:16 final size:14
Alignment explanation
Indices: 445785--445830 Score: 67
Period size: 14 Copynumber: 3.3 Consensus size: 14
445775 CATACATACA
445785 GGTTCACACATCTG
1 GGTTCACACATCTG
*
445799 GGTTCACACATAC-A
1 GGTTCACACAT-CTG
445813 GGTTCACACATCTG
1 GGTTCACACATCTG
445827 GGTT
1 GGTT
445831 TGCACATACA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 1 0.04
14 26 0.93
15 1 0.04
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (14 bp):
GGTTCACACATCTG
Found at i:445865 original size:28 final size:28
Alignment explanation
Indices: 445778--445851 Score: 121
Period size: 28 Copynumber: 2.6 Consensus size: 28
445768 GCTAACACAT
445778 ACATACAGGTTCACACATCTGGGTTCAC
1 ACATACAGGTTCACACATCTGGGTTCAC
**
445806 ACATACAGGTTCACACATCTGGGTTTGC
1 ACATACAGGTTCACACATCTGGGTTCAC
*
445834 ACATACAGGTTCATACAT
1 ACATACAGGTTCACACAT
445852 ACAAGTTCAC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (28 bp):
ACATACAGGTTCACACATCTGGGTTCAC
Found at i:445887 original size:42 final size:42
Alignment explanation
Indices: 445785--445893 Score: 105
Period size: 42 Copynumber: 2.6 Consensus size: 42
445775 CATACATACA
* * *
445785 GGTTCACACAT-CTGGGTTCACACATACAGGTTCACACATCTG
1 GGTTCGCACATAC-GGGTTCATACATACAAGTTCACACATCTG
* * *
445827 GGTTTGCACATACAGGTTCATACATACAAGTTCACACATTTG
1 GGTTCGCACATACGGGTTCATACATACAAGTTCACACATCTG
** *
445869 GAGTTCGCTTATA-GGGTTCGTACAT
1 G-GTTCGCACATACGGGTTCATACAT
445894 TTGGGTTCTC
Statistics
Matches: 54, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
42 45 0.83
43 9 0.17
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (42 bp):
GGTTCGCACATACGGGTTCATACATACAAGTTCACACATCTG
Found at i:446000 original size:29 final size:29
Alignment explanation
Indices: 445967--446038 Score: 83
Period size: 28 Copynumber: 2.5 Consensus size: 29
445957 TCGCATTAGG
* * *
445967 GGGTTCACCTATAGGAGTTTGCATACAAT
1 GGGTTCGCCTATAGGAATTTGCATACAAA
* * *
445996 GGGTTTGCCTTTA-AAATTTGCATACAAA
1 GGGTTCGCCTATAGGAATTTGCATACAAA
446024 GGGTTCGCCTATAGG
1 GGGTTCGCCTATAGG
446039 GTCCATGTAA
Statistics
Matches: 33, Mismatches: 9, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
28 23 0.70
29 10 0.30
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (29 bp):
GGGTTCGCCTATAGGAATTTGCATACAAA
Found at i:450150 original size:21 final size:21
Alignment explanation
Indices: 450115--450165 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
450105 TGATTATGTA
450115 ATTTGGATTTATAAACATTAT
1 ATTTGGATTTATAAACATTAT
* * * *
450136 GTTTTGATTTCTAAACTTTAT
1 ATTTGGATTTATAAACATTAT
450157 ATTTGGATT
1 ATTTGGATT
450166 ATGCTATTAT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.06, G:0.12, T:0.53
Consensus pattern (21 bp):
ATTTGGATTTATAAACATTAT
Found at i:451005 original size:21 final size:21
Alignment explanation
Indices: 450979--451026 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
450969 TTATGTAATC
* **
450979 TGGATTTATAAATTTTATGTT
1 TGGATTTATAAACTTTATACT
*
451000 TGGATTTCTAAACTTTATACT
1 TGGATTTATAAACTTTATACT
451021 TGGATT
1 TGGATT
451027 ACACTATTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.27, C:0.06, G:0.15, T:0.52
Consensus pattern (21 bp):
TGGATTTATAAACTTTATACT
Found at i:451802 original size:21 final size:21
Alignment explanation
Indices: 451775--451825 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
451765 GGATTAAGTA
451775 ATTTGGATTTATAAACTTTAT
1 ATTTGGATTTATAAACTTTAT
* *
451796 GTTTGGATTTCTAAACTTTAT
1 ATTTGGATTTATAAACTTTAT
*
451817 ACTTGGATT
1 ATTTGGATT
451826 ATGCTATTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.27, C:0.08, G:0.14, T:0.51
Consensus pattern (21 bp):
ATTTGGATTTATAAACTTTAT
Found at i:452250 original size:24 final size:24
Alignment explanation
Indices: 452223--452278 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
452213 CACATTTTGA
452223 GTTCGCATAGTACTTACATGTAGG
1 GTTCGCATAGTACTTACATGTAGG
* *
452247 GTTCGCACAGTACTTATATGTAGG
1 GTTCGCATAGTACTTACATGTAGG
*
452271 GTTTGCAT
1 GTTCGCAT
452279 GATAACACTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.36
Consensus pattern (24 bp):
GTTCGCATAGTACTTACATGTAGG
Found at i:452395 original size:30 final size:30
Alignment explanation
Indices: 452315--452428 Score: 88
Period size: 30 Copynumber: 3.8 Consensus size: 30
452305 TATTACATGT
*
452315 AAGGTTTGCA-AC-TAAGGGTTCATACATAC
1 AAGGTTTACACACATAA-GGTTCATACATAC
* ** * ** *
452344 GAGGTTCGCACACCTGGGGTTCGTACATAC
1 AAGGTTTACACACATAAGGTTCATACATAC
* * *
452374 AAGTTTTACACACTTAAGGTTCATACCTAC
1 AAGGTTTACACACATAAGGTTCATACATAC
* *
452404 AAGGTTTGCACACATAGGGTTCATA
1 AAGGTTTACACACATAAGGTTCATA
452429 TATCTAGGTC
Statistics
Matches: 65, Mismatches: 18, Indels: 3
0.76 0.21 0.03
Matches are distributed among these distances:
29 8 0.12
30 56 0.86
31 1 0.02
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (30 bp):
AAGGTTTACACACATAAGGTTCATACATAC
Found at i:452531 original size:43 final size:44
Alignment explanation
Indices: 452451--452542 Score: 105
Period size: 43 Copynumber: 2.1 Consensus size: 44
452441 CATATACAGT
* * **
452451 GTTCGCACACCTACGGTTCACATATACGGGTTCGCACATATAG-
1 GTTCACACACCTACGGTTCACACATACAAGTTCGCACATATAGA
* * * *
452494 GTTCACACACCTAGGGTTCATACATACAAGTTTGCACATCTAGA
1 GTTCACACACCTACGGTTCACACATACAAGTTCGCACATATAGA
452538 GTTCA
1 GTTCA
452543 TCTAAAGGGT
Statistics
Matches: 40, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
43 35 0.88
44 5 0.12
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.27
Consensus pattern (44 bp):
GTTCACACACCTACGGTTCACACATACAAGTTCGCACATATAGA
Found at i:452582 original size:13 final size:14
Alignment explanation
Indices: 452549--452584 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
452539 TTCATCTAAA
452549 GGGTTCGCACATAC
1 GGGTTCGCACATAC
452563 GGGTTCGCACAT-C
1 GGGTTCGCACATAC
*
452576 TGGTTCGCA
1 GGGTTCGCA
452585 TCAATATTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 9 0.43
14 12 0.57
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.25
Consensus pattern (14 bp):
GGGTTCGCACATAC
Found at i:452660 original size:28 final size:29
Alignment explanation
Indices: 452628--452688 Score: 81
Period size: 28 Copynumber: 2.1 Consensus size: 29
452618 TAAGGTTTTA
*
452628 TATATGGGCTCGCAT-TAGA-GGGTTTGCC
1 TATATGGGCTCGCATATA-ATGAGTTTGCC
*
452656 TATATGGGTTCGCATATAATGAGTTTGCC
1 TATATGGGCTCGCATATAATGAGTTTGCC
452685 TATA
1 TATA
452689 GAGTTTGCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 15 0.52
29 14 0.48
ACGTcount: A:0.23, C:0.15, G:0.26, T:0.36
Consensus pattern (29 bp):
TATATGGGCTCGCATATAATGAGTTTGCC
Found at i:455105 original size:23 final size:23
Alignment explanation
Indices: 455074--455186 Score: 79
Period size: 23 Copynumber: 4.9 Consensus size: 23
455064 TTATAATTTG
* *
455074 CCATGAAAGCTATTCTTTGTTTT
1 CCATAAAAGCTATTCATTGTTTT
* * *
455097 CCATAAAAGCCATTCATTATTTG
1 CCATAAAAGCTATTCATTGTTTT
*
455120 CCACAAAAG-TCATTCATTGTTTT
1 CCATAAAAGCT-ATTCATTGTTTT
* * *
455143 CCA-CAAAGACCATTCATTATTTT
1 CCATAAAAG-CTATTCATTGTTTT
* *
455166 CCA-CAAAGGTCATTCATTGTT
1 CCATAAAAGCT-ATTCATTGTT
455187 GTCATGTTTA
Statistics
Matches: 71, Mismatches: 15, Indels: 8
0.76 0.16 0.09
Matches are distributed among these distances:
22 4 0.06
23 67 0.94
ACGTcount: A:0.30, C:0.22, G:0.10, T:0.38
Consensus pattern (23 bp):
CCATAAAAGCTATTCATTGTTTT
Found at i:455140 original size:46 final size:46
Alignment explanation
Indices: 455085--455186 Score: 152
Period size: 46 Copynumber: 2.2 Consensus size: 46
455075 CATGAAAGCT
*
455085 ATTCTTTGTTTTCCATAAAAG-CCATTCATTATTTGCCACAAAAGTC
1 ATTCATTGTTTTCCA-AAAAGACCATTCATTATTTGCCACAAAAGTC
* * *
455131 ATTCATTGTTTTCCACAAAGACCATTCATTATTTTCCACAAAGGTC
1 ATTCATTGTTTTCCAAAAAGACCATTCATTATTTGCCACAAAAGTC
455177 ATTCATTGTT
1 ATTCATTGTT
455187 GTCATGTTTA
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
45 4 0.08
46 47 0.92
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (46 bp):
ATTCATTGTTTTCCAAAAAGACCATTCATTATTTGCCACAAAAGTC
Found at i:456464 original size:38 final size:38
Alignment explanation
Indices: 456412--456499 Score: 101
Period size: 38 Copynumber: 2.3 Consensus size: 38
456402 GTCCCTTTAC
* *
456412 ATTTATTTATTTATTTAGTTTCCATGATCT-TAATTACTT
1 ATTTA-TTATTTATTTAATTTCCATAAT-TATAATTACTT
* *
456451 ATTTATTATTTATTTAATTTGCATAATTATAATTATTT
1 ATTTATTATTTATTTAATTTCCATAATTATAATTACTT
456489 A-TT-TTATTTAT
1 ATTTATTATTTAT
456500 ATTTTATTTA
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
36 8 0.18
37 3 0.07
38 28 0.64
39 5 0.11
ACGTcount: A:0.30, C:0.06, G:0.03, T:0.61
Consensus pattern (38 bp):
ATTTATTATTTATTTAATTTCCATAATTATAATTACTT
Found at i:456502 original size:15 final size:16
Alignment explanation
Indices: 456484--456531 Score: 55
Period size: 15 Copynumber: 3.0 Consensus size: 16
456474 TAATTATAAT
456484 TATTTATT-TTATTTA
1 TATTTATTATTATTTA
*
456499 TATTTTATTTATTACTTA
1 TA-TTTA-TTATTATTTA
456517 TATTT-TTATTATTTA
1 TATTTATTATTATTTA
456532 CATATTTACT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
15 11 0.39
16 4 0.14
17 5 0.18
18 8 0.29
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (16 bp):
TATTTATTATTATTTA
Found at i:456512 original size:27 final size:27
Alignment explanation
Indices: 456449--456530 Score: 71
Period size: 27 Copynumber: 3.0 Consensus size: 27
456439 TCTTAATTAC
* *
456449 TTATTTATTATTTATTTAATTTGCATA-A
1 TTATTTATTATTTATTTTATTT--ATATT
*
456477 TTA-TAATTATTTATTTTATTTATATT
1 TTATTTATTATTTATTTTATTTATATT
* *
456503 TTATTTATTACTTATATT-TTTATTATT
1 TTATTTATTATTTATTTTATTTA-TATT
456530 T
1 T
456531 ACATATTTAC
Statistics
Matches: 45, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
25 3 0.07
26 7 0.16
27 32 0.71
28 3 0.07
ACGTcount: A:0.29, C:0.02, G:0.01, T:0.67
Consensus pattern (27 bp):
TTATTTATTATTTATTTTATTTATATT
Found at i:456528 original size:18 final size:17
Alignment explanation
Indices: 456486--456529 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
456476 ATTATAATTA
*
456486 TTTATT-TTATTTATAT
1 TTTATTATTACTTATAT
456502 TTTATTTATTACTTATATT
1 TTTA-TTATTACTTATA-T
456521 TTTATTATT
1 TTTATTATT
456530 TACATATTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 4 0.17
17 2 0.08
18 13 0.54
19 5 0.21
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTATTATTACTTATAT
Found at i:459379 original size:20 final size:19
Alignment explanation
Indices: 459338--459380 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
459328 GATTTTTAAA
* *
459338 AATACATAATTATTCATCT
1 AATACATAACTATTCAACT
*
459357 AATACTATAACTATTCAAGT
1 AATAC-ATAACTATTCAACT
459377 AATA
1 AATA
459381 TTACTTGAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.47, C:0.14, G:0.02, T:0.37
Consensus pattern (19 bp):
AATACATAACTATTCAACT
Found at i:459917 original size:14 final size:14
Alignment explanation
Indices: 459898--459925 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
459888 AGAATACATC
459898 TTTAATTAATTAAA
1 TTTAATTAATTAAA
459912 TTTAATTAATTAAA
1 TTTAATTAATTAAA
459926 ATTTTTAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
TTTAATTAATTAAA
Found at i:469212 original size:24 final size:22
Alignment explanation
Indices: 469185--469265 Score: 74
Period size: 22 Copynumber: 3.5 Consensus size: 22
469175 GACAACCAAG
469185 ATTTTATATTGTTTATAATTCTTA
1 ATTTTAT-TT-TTTATAATTCTTA
* *
469209 ATTTCATTTTTTTAATAATT-TTT
1 ATTTTA-TTTTTT-ATAATTCTTA
* *
469232 ATATTGTTTTTTATAATTCTTA
1 ATTTTATTTTTTATAATTCTTA
*
469254 ATTTAATTTTTT
1 ATTTTATTTTTT
469266 GTGATTTTAA
Statistics
Matches: 45, Mismatches: 9, Indels: 8
0.73 0.15 0.13
Matches are distributed among these distances:
21 6 0.13
22 17 0.38
23 8 0.18
24 13 0.29
25 1 0.02
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (22 bp):
ATTTTATTTTTTATAATTCTTA
Found at i:469274 original size:42 final size:41
Alignment explanation
Indices: 469184--469274 Score: 105
Period size: 45 Copynumber: 2.2 Consensus size: 41
469174 TGACAACCAA
*
469184 GATTTTATATTGTTTATAATTCTTAATTTCATTTTTTTAAT
1 GATTTTATATTGTTTATAATTCTTAATTTCAATTTTTTAAT
* *
469225 AATTTTTATATTGTTTTTTATAATTCTTAATTT-AATTTTTT-GT
1 GA-TTTTATATTG---TTTATAATTCTTAATTTCAATTTTTTAAT
469268 GATTTTA
1 GATTTTA
469275 AAAAAAAATT
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
41 1 0.02
42 15 0.36
43 2 0.05
44 7 0.17
45 17 0.40
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.65
Consensus pattern (41 bp):
GATTTTATATTGTTTATAATTCTTAATTTCAATTTTTTAAT
Found at i:469729 original size:34 final size:34
Alignment explanation
Indices: 469690--469761 Score: 117
Period size: 34 Copynumber: 2.1 Consensus size: 34
469680 CGATCAACAA
*
469690 TGATTTATTCTATCTTTAATTATATACTATCAGT
1 TGATTTATTCTATCTTTAATTATATACTATCAAT
* *
469724 TGATTTATTTTATTTTTAATTATATACTATCAAT
1 TGATTTATTCTATCTTTAATTATATACTATCAAT
469758 TGAT
1 TGAT
469762 CAAACTATCG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.31, C:0.08, G:0.06, T:0.56
Consensus pattern (34 bp):
TGATTTATTCTATCTTTAATTATATACTATCAAT
Found at i:470181 original size:12 final size:12
Alignment explanation
Indices: 470164--470200 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
470154 GAATGATAAT
*
470164 TTATTATTATTA
1 TTATTATTTTTA
470176 TTATTATTTTTA
1 TTATTATTTTTA
*
470188 TTTTTATTTTTA
1 TTATTATTTTTA
470200 T
1 T
470201 GTGATAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (12 bp):
TTATTATTTTTA
Found at i:472714 original size:57 final size:58
Alignment explanation
Indices: 472634--472749 Score: 216
Period size: 57 Copynumber: 2.0 Consensus size: 58
472624 TTTAAAAAAA
*
472634 TAATTTTAATTTTTTTCTAAAGGGAAAACAACCTAAGTTCTATAAAGAAAAACTTGGG
1 TAATTTTAAGTTTTTTCTAAAGGGAAAACAACCTAAGTTCTATAAAGAAAAACTTGGG
472692 TAATTTT-AGTTTTTTCTAAAGGGAAAACAACCTAAGTTCTATAAAGAAAAACTTGGG
1 TAATTTTAAGTTTTTTCTAAAGGGAAAACAACCTAAGTTCTATAAAGAAAAACTTGGG
472749 T
1 T
472750 TTTTATAGGA
Statistics
Matches: 57, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
57 50 0.88
58 7 0.12
ACGTcount: A:0.41, C:0.10, G:0.15, T:0.34
Consensus pattern (58 bp):
TAATTTTAAGTTTTTTCTAAAGGGAAAACAACCTAAGTTCTATAAAGAAAAACTTGGG
Found at i:472787 original size:22 final size:22
Alignment explanation
Indices: 472738--472787 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
472728 TTCTATAAAG
* * *
472738 AAAAACTTGGGTTTTTATAGGA
1 AAAAATTTGGATTTTTACAGGA
*
472760 AAAAATTTGGATTTTTACATGA
1 AAAAATTTGGATTTTTACAGGA
472782 AAAAAT
1 AAAAAT
472788 CATTTTATCT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (22 bp):
AAAAATTTGGATTTTTACAGGA
Found at i:480714 original size:31 final size:32
Alignment explanation
Indices: 480679--480748 Score: 83
Period size: 31 Copynumber: 2.2 Consensus size: 32
480669 TCAACCAAGA
480679 AATTCAATCAC-AT-AACCATAAAGTTTATTTC
1 AATTCAATCACTATAAACCA-AAAGTTTATTTC
* *
480710 AATTC-ATCCCTCTAAACCAAAAGTTTATTTC
1 AATTCAATCACTATAAACCAAAAGTTTATTTC
*
480741 ATTTCAAT
1 AATTCAAT
480749 TGTATAATCA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
30 4 0.12
31 22 0.67
32 7 0.21
ACGTcount: A:0.39, C:0.21, G:0.03, T:0.37
Consensus pattern (32 bp):
AATTCAATCACTATAAACCAAAAGTTTATTTC
Found at i:490154 original size:24 final size:24
Alignment explanation
Indices: 490126--490186 Score: 95
Period size: 24 Copynumber: 2.5 Consensus size: 24
490116 TTAATTCGTG
* *
490126 AGCATAAACGTATAGTGGTTGACA
1 AGCATAAACGTATAGTGGCTAACA
*
490150 AGCATAAACGTATAGTGGCTAACG
1 AGCATAAACGTATAGTGGCTAACA
490174 AGCATAAACGTAT
1 AGCATAAACGTAT
490187 GTTCTCTGAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.39, C:0.15, G:0.23, T:0.23
Consensus pattern (24 bp):
AGCATAAACGTATAGTGGCTAACA
Found at i:496985 original size:52 final size:52
Alignment explanation
Indices: 496920--497024 Score: 210
Period size: 52 Copynumber: 2.0 Consensus size: 52
496910 CTTAATTTTT
496920 TTGTATCATATATTTTTAATCTTATAAATAATAGAGCAAACTTATATACTAA
1 TTGTATCATATATTTTTAATCTTATAAATAATAGAGCAAACTTATATACTAA
496972 TTGTATCATATATTTTTAATCTTATAAATAATAGAGCAAACTTATATACTAA
1 TTGTATCATATATTTTTAATCTTATAAATAATAGAGCAAACTTATATACTAA
497024 T
1 T
497025 GAAGTAACAA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.42, C:0.10, G:0.06, T:0.43
Consensus pattern (52 bp):
TTGTATCATATATTTTTAATCTTATAAATAATAGAGCAAACTTATATACTAA
Found at i:497140 original size:24 final size:24
Alignment explanation
Indices: 497087--497144 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 24
497077 TGTTAATTTG
*
497087 TGAGCATAAACGTATAGTGACTGG
1 TGAGCATAAACGTATAGTGACTGA
** *
497111 CAAGCATAAACGTATAGTGGCTGA
1 TGAGCATAAACGTATAGTGACTGA
497135 TGAGCATAAA
1 TGAGCATAAA
497145 TGTACGTTCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.38, C:0.14, G:0.26, T:0.22
Consensus pattern (24 bp):
TGAGCATAAACGTATAGTGACTGA
Found at i:503630 original size:104 final size:104
Alignment explanation
Indices: 503445--503651 Score: 240
Period size: 104 Copynumber: 2.0 Consensus size: 104
503435 AATTGGTTCC
* * *
503445 GAATAGGATATTCAATTATTTAGCTTCAAAGAAAAATCATACCTAACACGTTAAGGCACAATTCC
1 GAATAGAATATTCAATTACTTAGCTTCAAAGAAAAATCATACCCAACACGTTAAGGCACAATTCC
*
503510 TCGACTTTCCTAAAATAAA-AGAACATTACCTCGATTTTT
66 TCGACTTCCCTAAAATAAAGA-AACATTACCTCGATTTTT
* * * ** *
503549 GAATAGAATATTCAATTACTTAGGTTCGAAGAAAAAATCGTACCCAGTACGTT-TGAGCACAATT
1 GAATAGAATATTCAATTACTTAGCTTCAAAG-AAAAATCATACCCAACACGTTAAG-GCACAATT
** * *
503613 TTTCGAGTTCCCT-AAATAAAGAAACATTGCCTCGATTTT
64 CCTCGACTTCCCTAAAATAAAGAAACATTACCTCGATTTT
503652 GAAAATATTT
Statistics
Matches: 86, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
104 51 0.59
105 35 0.41
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.31
Consensus pattern (104 bp):
GAATAGAATATTCAATTACTTAGCTTCAAAGAAAAATCATACCCAACACGTTAAGGCACAATTCC
TCGACTTCCCTAAAATAAAGAAACATTACCTCGATTTTT
Found at i:504110 original size:60 final size:58
Alignment explanation
Indices: 503989--504153 Score: 143
Period size: 60 Copynumber: 2.8 Consensus size: 58
503979 AACAACGTAA
* * * ** * * * *
503989 AAAATGAAATTTTGGAAAGTTTGGGCACCAAATTCAATTTTTTGGAAATCTGAGGGATC
1 AAAATAAAATTTTGAAAAGTTCGGG-GTCAAATTCAAATTTTTGAAAAACTCAGGGATC
* * * *
504048 AAATTTAAATTTTCGAAAAGGTTGGGGGTTAAATTCAAATTTTTGAAAAACTCA-GGAGTC
1 AAAATAAAATTTT-GAAAA-GTTCGGGGTCAAATTCAAATTTTTGAAAAACTCAGGGA-TC
* * *
504108 AAAATAAAATTTTGGAAAGTTCGGGGTCAAATTTAACTTTTTGAAA
1 AAAATAAAATTTTGAAAAGTTCGGGGTCAAATTCAAATTTTTGAAA
504154 CGTTTGAGGT
Statistics
Matches: 85, Mismatches: 18, Indels: 7
0.77 0.16 0.06
Matches are distributed among these distances:
58 24 0.28
59 18 0.21
60 37 0.44
61 6 0.07
ACGTcount: A:0.38, C:0.08, G:0.20, T:0.33
Consensus pattern (58 bp):
AAAATAAAATTTTGAAAAGTTCGGGGTCAAATTCAAATTTTTGAAAAACTCAGGGATC
Found at i:506064 original size:40 final size:38
Alignment explanation
Indices: 506020--506403 Score: 180
Period size: 40 Copynumber: 9.8 Consensus size: 38
506010 CCCGTGATCG
*
506020 GGGTAAAAGATCGATGTGTCTTCAACCTGTCCTCTAATTA
1 GGGTAAAAGATCG-TGTGTCTTCAATCTG-CCTCTAATTA
* * * **
506060 GGGTAAAAGATTG-GATG-CTTTAATCTGCCTCATGATCG
1 GGGTAAAAGATCGTG-TGTCTTCAATCTGCCTC-TAATTA
* *
506098 GGGTAAGAGATCGGTGTGTCTTCAATTTGCCCTCTAATTA
1 GGGTAAAAGATC-GTGTGTCTTCAATCTG-CCTCTAATTA
* *
506138 GGGGTAAAAGAT-TTGATG-CTTCAATCTGCCTCATGA-TA
1 -GGGTAAAAGATCGTG-TGTCTTCAATCTGCCTC-TAATTA
* * * * * *
506176 GGGGTAAGAGATTGGTGTGTCTTCAATATGCTTTTTGATTA
1 -GGGTAAAAGA-TCGTGTGTCTTCAATCTGC-CTCTAATTA
* * **
506217 AGGTAAAAGA-C-TG-GATGCTTCAATCTGCCTCATGATCG
1 GGGTAAAAGATCGTGTG-T-CTTCAATCTGCCTC-TAATTA
* * * * *
506255 GGGTAAGAGATTGGTGTGTCTTCATTCTGCCCTTTGATTA
1 GGGTAAAAGA-TCGTGTGTCTTCAATCTG-CCTCTAATTA
* * **
506295 GGGTAAAAGATTG-GATG-CTTCAATCTGCCTCATGATCG
1 GGGTAAAAGATCGTG-TGTCTTCAATCTGCCTC-TAATTA
* * * *
506333 GGGTAAGAGATTGGTGTGTCTTCAATCTGCCCTTTGATTA
1 GGGTAAAAGA-TCGTGTGTCTTCAATCTG-CCTCTAATTA
*
506373 GGGTAAAAGATTG-GATG-CTTCAATCTGCCTC
1 GGGTAAAAGATCGTG-TGTCTTCAATCTGCCTC
506404 ATGATCGGGG
Statistics
Matches: 264, Mismatches: 51, Indels: 61
0.70 0.14 0.16
Matches are distributed among these distances:
36 1 0.00
37 14 0.05
38 94 0.36
39 33 0.12
40 95 0.36
41 26 0.10
42 1 0.00
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (38 bp):
GGGTAAAAGATCGTGTGTCTTCAATCTGCCTCTAATTA
Found at i:506109 original size:78 final size:78
Alignment explanation
Indices: 505919--506424 Score: 667
Period size: 78 Copynumber: 6.4 Consensus size: 78
505909 GAATAAGGTT
* * * * **
505919 TTCAATCTGCCACATGATCGGGGTAAGAGATTGGATGATATCTTCAATTTACCCCATGATT-GGG
1 TTCAATCTGCCTCATGATCGGGGTAAGAGATTGG-TG-TGTCTTCAATCTGCCCTTTGATTAGGG
*
505983 ATAAGAGATTGGATGGC
64 -TAAAAGATTGGAT-GC
* * * * * * * *
506000 TTC-ATCCTGTCC-CGTGATCGGGGTAAAAGATCGATGTGTCTTCAACCTGTCCTCTAATTAGGG
1 TTCAAT-CTG-CCTCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATCTGCCCTTTGATTAGGG
506063 TAAAAGATTGGATGC
64 TAAAAGATTGGATGC
* * * * *
506078 TTTAATCTGCCTCATGATCGGGGTAAGAGATCGGTGTGTCTTCAATTTGCCCTCTAATTAGGGGT
1 TTCAATCTGCCTCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATCTGCCCTTTGATTA-GGGT
*
506143 AAAAGATTTGATGC
65 AAAAGATTGGATGC
* * ** *
506157 TTCAATCTGCCTCATGATAGGGGTAAGAGATTGGTGTGTCTTCAATATGCTTTTTGATTAAGGTA
1 TTCAATCTGCCTCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATCTGCCCTTTGATTAGGGTA
*
506222 AAAGACTGGATGC
66 AAAGATTGGATGC
*
506235 TTCAATCTGCCTCATGATCGGGGTAAGAGATTGGTGTGTCTTCATTCTGCCCTTTGATTAGGGTA
1 TTCAATCTGCCTCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATCTGCCCTTTGATTAGGGTA
506300 AAAGATTGGATGC
66 AAAGATTGGATGC
506313 TTCAATCTGCCTCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATCTGCCCTTTGATTAGGGTA
1 TTCAATCTGCCTCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATCTGCCCTTTGATTAGGGTA
506378 AAAGATTGGATGC
66 AAAGATTGGATGC
*
506391 TTCAATCTGCCTCATGATCGGGGTATGAGATTGG
1 TTCAATCTGCCTCATGATCGGGGTAAGAGATTGG
506425 ATGGTAGCTT
Statistics
Matches: 378, Mismatches: 41, Indels: 15
0.87 0.09 0.03
Matches are distributed among these distances:
77 2 0.01
78 245 0.65
79 98 0.26
80 7 0.02
81 24 0.06
82 2 0.01
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.33
Consensus pattern (78 bp):
TTCAATCTGCCTCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATCTGCCCTTTGATTAGGGTA
AAAGATTGGATGC
Found at i:506378 original size:156 final size:156
Alignment explanation
Indices: 505919--506424 Score: 678
Period size: 157 Copynumber: 3.2 Consensus size: 156
505909 GAATAAGGTT
* * * *
505919 TTCAATCTGCCACATGATCGGGGTAAGAGATTGGATGATATCTTCAATTTACCCCATGATT-GGG
1 TTCAATCTGCCTCATGATCGGGGTAAGAGATTGG-TG-TGTCTTCAATTTGCCCTATGATTAGGG
* * * * * *
505983 ATAAGAGATTGGATGGCTTC-ATCCTGTCC-CGTGATCGGGGTAAAAGATCGATGTGTCTTCAAC
64 -TAAAAGATTGGAT-GCTTCAAT-CTG-CCTCATGATCGGGGTAAGAGATTGGTGTGTCTTCAAT
* * *
506046 CTGTCCTCTAATTAGGGTAAAAGATTGGATGC
125 CTGCCCTTTGATTAGGGTAAAAGATTGGATGC
* * * *
506078 TTTAATCTGCCTCATGATCGGGGTAAGAGATCGGTGTGTCTTCAATTTGCCCTCTAATTAGGGGT
1 TTCAATCTGCCTCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATTTGCCCTATGATTA-GGGT
* * * *
506143 AAAAGATTTGATGCTTCAATCTGCCTCATGATAGGGGTAAGAGATTGGTGTGTCTTCAATATGCT
65 AAAAGATTGGATGCTTCAATCTGCCTCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATCTGCC
* * *
506208 TTTTGATTAAGGTAAAAGACTGGATGC
130 CTTTGATTAGGGTAAAAGATTGGATGC
*
506235 TTCAATCTGCCTCATGATCGGGGTAAGAGATTGGTGTGTCTTC-ATTCTGCCCTTTGATTAGGGT
1 TTCAATCTGCCTCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATT-TGCCCTATGATTAGGGT
506299 AAAAGATTGGATGCTTCAATCTGCCTCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATCTGCC
65 AAAAGATTGGATGCTTCAATCTGCCTCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATCTGCC
506364 CTTTGATTAGGGTAAAAGATTGGATGC
130 CTTTGATTAGGGTAAAAGATTGGATGC
*
506391 TTCAATCTGCCTCATGATCGGGGTATGAGATTGG
1 TTCAATCTGCCTCATGATCGGGGTAAGAGATTGG
506425 ATGGTAGCTT
Statistics
Matches: 306, Mismatches: 36, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
156 127 0.42
157 130 0.42
158 15 0.05
159 34 0.11
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.33
Consensus pattern (156 bp):
TTCAATCTGCCTCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATTTGCCCTATGATTAGGGTA
AAAGATTGGATGCTTCAATCTGCCTCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATCTGCCC
TTTGATTAGGGTAAAAGATTGGATGC
Found at i:506601 original size:21 final size:19
Alignment explanation
Indices: 506572--506628 Score: 51
Period size: 21 Copynumber: 2.8 Consensus size: 19
506562 TAAGACTCAT
*
506572 CTTTGCAGCTTCAATCTAGCC
1 CTTTACAGCTTCAAT-TAG-C
* *
506593 CTTTACAGCTTTGAGATTCGC
1 CTTTACAGC-TTCA-ATTAGC
506614 CTTTACAGCTTCAAT
1 CTTTACAGCTTCAAT
506629 ATGCTTTTCT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
19 2 0.07
20 3 0.10
21 18 0.60
22 5 0.17
23 2 0.07
ACGTcount: A:0.21, C:0.28, G:0.14, T:0.37
Consensus pattern (19 bp):
CTTTACAGCTTCAATTAGC
Found at i:506848 original size:97 final size:98
Alignment explanation
Indices: 506716--506895 Score: 281
Period size: 97 Copynumber: 1.8 Consensus size: 98
506706 TTGTAGCCTC
* * * ** *
506716 AATCTTTCCCTTCACATCTCTAAGGTATAAGGTTCGCTGTTGTGACTTCAACCTTTCCCTCCATA
1 AATCATTCCCATCACATCTCTAAGGTACAAGGTTCGCCATTGCGACTTCAACCTTTCCCTCCATA
506781 TCTCCATGGTACAAGATTTTTCGTTATGGTTTT
66 TCTCCATGGTACAAGATTTTTCGTTATGGTTTT
* *
506814 AATCATTCCCATCACCTC-CTAAGGTACAAGGTTCGCCATTGCGACTTCAACTTTTCCCTCCATA
1 AATCATTCCCATCACATCTCTAAGGTACAAGGTTCGCCATTGCGACTTCAACCTTTCCCTCCATA
506878 TCTCCATGGTACAAGATT
66 TCTCCATGGTACAAGATT
506896 CACCATTGTG
Statistics
Matches: 74, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
97 59 0.80
98 15 0.20
ACGTcount: A:0.23, C:0.28, G:0.13, T:0.36
Consensus pattern (98 bp):
AATCATTCCCATCACATCTCTAAGGTACAAGGTTCGCCATTGCGACTTCAACCTTTCCCTCCATA
TCTCCATGGTACAAGATTTTTCGTTATGGTTTT
Found at i:506919 original size:49 final size:49
Alignment explanation
Indices: 506696--506939 Score: 156
Period size: 49 Copynumber: 5.0 Consensus size: 49
506686 TCAGGGTATG
* * * * * *
506696 AGATTCGCCATTGTAGCCTCAATCTTTCCCTTCACATCTCTAAGGTATA
1 AGATTCGCCATTGTGGCTTCAATCTTTCCCTCCATATCTCCAAGGTACA
* ** * * *
506745 AGGTTCGCTGTTGTGACTTCAACCTTTCCCTCCATATCTCCATGGTACA
1 AGATTCGCCATTGTGGCTTCAATCTTTCCCTCCATATCTCCAAGGTACA
*** * * * * * *
506794 AGATTTTTCGTTATGGTTTTAATCATT--C-CCATCACCTCCTAAGGTACA
1 AGATTCGCCATTGTGGCTTCAATCTTTCCCTCCAT-ATCTCC-AAGGTACA
* * * *
506842 AGGTTCGCCATTGCGACTTCAA-CTTTTCCCTCCATATCTCCATGGTACA
1 AGATTCGCCATTGTGGCTTCAATC-TTTCCCTCCATATCTCCAAGGTACA
* * * *
506891 AGATTCACCATTGTGGCCTCAATCTTTCCCAT-CATGTCTCTAAGGTACA
1 AGATTCGCCATTGTGGCTTCAATCTTTCCC-TCCATATCTCCAAGGTACA
506940 TGGTTCATCG
Statistics
Matches: 141, Mismatches: 46, Indels: 16
0.69 0.23 0.08
Matches are distributed among these distances:
46 4 0.03
47 7 0.05
48 21 0.15
49 97 0.69
50 8 0.06
51 4 0.03
ACGTcount: A:0.23, C:0.29, G:0.14, T:0.35
Consensus pattern (49 bp):
AGATTCGCCATTGTGGCTTCAATCTTTCCCTCCATATCTCCAAGGTACA
Found at i:506975 original size:16 final size:16
Alignment explanation
Indices: 506954--506985 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
506944 TCATCGTTGC
506954 GGCTTCAACCTTTTCT
1 GGCTTCAACCTTTTCT
506970 GGCTTCAACCTTTTCT
1 GGCTTCAACCTTTTCT
506986 TCCATATCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.31, G:0.12, T:0.44
Consensus pattern (16 bp):
GGCTTCAACCTTTTCT
Found at i:507068 original size:114 final size:114
Alignment explanation
Indices: 506858--507075 Score: 296
Period size: 114 Copynumber: 1.9 Consensus size: 114
506848 GCCATTGCGA
* *
506858 CTTCAACTTTTCCCTCCATATCTCCATGGTACAAGATTCACCATTGTGGCCTCAATCTTTCCCAT
1 CTTCAACTTTTCCCTCCATATCTCCATGGTACAAGATTCACCATTATGGCCTCAACCTTTCCCAT
* * * * *
506923 CATGTCTCTAAGGTACATGGTTCATCGTTGCGGCTTCAACCTTTTCTGG
66 CACGTCTCTAAGGTACAAGGTTCACCATTGCGACTTCAACCTTTTCTGG
* * * *
506972 CTTCAACCTTTT-CTTCCATATCTCCATGGTACAAGATTCACCGTTATGGCTTCAACCCTTT-TC
1 CTTCAA-CTTTTCCCTCCATATCTCCATGGTACAAGATTCACCATTATGGCCTCAA-CCTTTCCC
*
507035 ATCACGTCTCTAAGGTACAAGGTTCGCCATTGCGACTTCAA
64 ATCACGTCTCTAAGGTACAAGGTTCACCATTGCGACTTCAA
507076 TCTCCATATC
Statistics
Matches: 90, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
114 81 0.90
115 9 0.10
ACGTcount: A:0.21, C:0.30, G:0.14, T:0.35
Consensus pattern (114 bp):
CTTCAACTTTTCCCTCCATATCTCCATGGTACAAGATTCACCATTATGGCCTCAACCTTTCCCAT
CACGTCTCTAAGGTACAAGGTTCACCATTGCGACTTCAACCTTTTCTGG
Found at i:507074 original size:49 final size:46
Alignment explanation
Indices: 507029--507146 Score: 134
Period size: 43 Copynumber: 2.5 Consensus size: 46
507019 GGCTTCAACC
* *
507029 CTTTTCATCACGTCTCTAAGGTACAAGGTTCGCCATTGCGACTTCAA
1 CTTTCCATCA-GTCTCTAAGGTACAAGATTCGCCATTGCGACTTCAA
* * *
507076 -TCTCCAT-A-TCTCTATGGTACAAGATTCGCCATTGCGTCTTCAA
1 CTTTCCATCAGTCTCTAAGGTACAAGATTCGCCATTGCGACTTCAA
507119 TCTTTCCCATCATGTCTCTAAGGTACAA
1 -CTTT-CCATCA-GTCTCTAAGGTACAA
507147 AGTTTTTCGT
Statistics
Matches: 58, Mismatches: 7, Indels: 10
0.77 0.09 0.13
Matches are distributed among these distances:
43 32 0.55
45 3 0.05
46 9 0.16
47 1 0.02
49 13 0.22
ACGTcount: A:0.24, C:0.28, G:0.14, T:0.34
Consensus pattern (46 bp):
CTTTCCATCAGTCTCTAAGGTACAAGATTCGCCATTGCGACTTCAA
Found at i:507132 original size:206 final size:207
Alignment explanation
Indices: 506761--507172 Score: 576
Period size: 206 Copynumber: 2.0 Consensus size: 207
506751 GCTGTTGTGA
*** * * *
506761 CTTCAACCTTTCCCTCCATATCTCCATGGTACAAGATTTTTCGTTATGGTTTTAATCATTCCCAT
1 CTTCAACCTTTCCCTCCATATCTCCATGGTACAAGATTCACCGTTATGGCTTCAACCATTCCCAT
506826 CACCTCCTAAGGTACAAGGTTCGCCATTGCGACTTCAACTTTTCCCTCCATATCTCCATGGTACA
66 CACCTCCTAAGGTACAAGGTTCGCCATTGCGACTTCAA---TT-CCTCCATATCTCCATGGTACA
* **
506891 AGATTCACCATTGTGGCCTCAATCTTTCCCATCATGTCTCTAAGGTACATGGTTCATCGTTGCGG
127 AGATTCACCATTGCGGCCTCAATCTTTCCCATCATGTCTCTAAGGTACAAAGTTCATCGTTGCGG
506956 CTTCAACCTTTTCTGG
192 CTTCAACCTTTTCTGG
* * * **
506972 CTTCAACCTTTTCTTCCATATCTCCATGGTACAAGATTCACCGTTATGGCTTCAACCCTTTTCAT
1 CTTCAACCTTTCCCTCCATATCTCCATGGTACAAGATTCACCGTTATGGCTTCAACCATTCCCAT
* *
507037 CACGTCTCTAAGGTACAAGGTTCGCCATTGCGACTTCAA-T-CTCCATATCTCTATGGTACAAGA
66 CACCTC-CTAAGGTACAAGGTTCGCCATTGCGACTTCAATTCCTCCATATCTCCATGGTACAAGA
* * * **
507100 TTCGCCATTGCGTCTTCAATCTTTCCCATCATGTCTCTAAGGTACAAAGTTTTTCGTTGCGGCTT
130 TTCACCATTGCGGCCTCAATCTTTCCCATCATGTCTCTAAGGTACAAAGTTCATCGTTGCGGCTT
507165 CAACCTTT
195 CAACCTTT
507173 CCCTCCATAT
Statistics
Matches: 179, Mismatches: 21, Indels: 7
0.86 0.10 0.03
Matches are distributed among these distances:
206 87 0.49
208 1 0.01
211 59 0.33
212 32 0.18
ACGTcount: A:0.21, C:0.29, G:0.14, T:0.36
Consensus pattern (207 bp):
CTTCAACCTTTCCCTCCATATCTCCATGGTACAAGATTCACCGTTATGGCTTCAACCATTCCCAT
CACCTCCTAAGGTACAAGGTTCGCCATTGCGACTTCAATTCCTCCATATCTCCATGGTACAAGAT
TCACCATTGCGGCCTCAATCTTTCCCATCATGTCTCTAAGGTACAAAGTTCATCGTTGCGGCTTC
AACCTTTTCTGG
Found at i:507160 original size:49 final size:48
Alignment explanation
Indices: 507113--507273 Score: 153
Period size: 49 Copynumber: 3.3 Consensus size: 48
507103 GCCATTGCGT
* * *
507113 CTTCAATCTTTCCCATCATGTCTCTAAGGTACAAAGTTTTTCGTTGCGG
1 CTTCAACCTTTCCC-TCATGTCTCTAAGGTACAAAGTTTATCGTTACGG
* * * ** *
507162 CTTCAACCTTTCCCTCCATATCTATAGGGTA-TTAGATTTACCGTTACGG
1 CTTCAACCTTTCCCT-CATGTCTCTAAGGTACAAAG-TTTATCGTTACGG
* * * *
507211 CTTCAATCTTTCCCTTCAAGTCTCTAAGGTACAAGGTTTGTCGTTACGG
1 CTTCAACCTTTCCC-TCATGTCTCTAAGGTACAAAGTTTATCGTTACGG
*
507260 CTTTAACCTTTCCC
1 CTTCAACCTTTCCC
507274 GCCATATCTT
Statistics
Matches: 87, Mismatches: 21, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
48 3 0.03
49 82 0.94
50 2 0.02
ACGTcount: A:0.20, C:0.27, G:0.15, T:0.38
Consensus pattern (48 bp):
CTTCAACCTTTCCCTCATGTCTCTAAGGTACAAAGTTTATCGTTACGG
Found at i:507160 original size:92 final size:94
Alignment explanation
Indices: 506986--507255 Score: 276
Period size: 92 Copynumber: 2.9 Consensus size: 94
506976 AACCTTTTCT
* * * * *
506986 TCCATATCTCCATGGTACAAGATTCACCGTTATGGCTTCAACCCTTT-TCATCACGTCTCTAAGG
1 TCCATATCTCTATGGTACAAGATTCACCGTTACGGCTTCAA-TCTTTCCCATCAAGTCTCTAAGG
* * *
507050 TACAAGGTTCGCCATTGCGACTTCAA-T-C
65 TACAAGGTTTGTCGTTGCGACTTCAACTCC
* * * * *
507078 TCCATATCTCTATGGTACAAGATTCGCCATTGCGTCTTCAATCTTTCCCATCATGTCTCTAAGGT
1 TCCATATCTCTATGGTACAAGATTCACCGTTACGGCTTCAATCTTTCCCATCAAGTCTCTAAGGT
* * *
507143 ACAAAGTTTTTCGTTGCGGCTTCAACCTTTCCC
66 ACAAGGTTTGTCGTTGCGACTTCAA-C--T-CC
* * ** * *
507176 TCCATATCTATAGGGTATTAGATTTACCGTTACGGCTTCAATCTTTCCCTTCAAGTCTCTAAGGT
1 TCCATATCTCTATGGTACAAGATTCACCGTTACGGCTTCAATCTTTCCCATCAAGTCTCTAAGGT
507241 ACAAGGTTTGTCGTT
66 ACAAGGTTTGTCGTT
507256 ACGGCTTTAA
Statistics
Matches: 143, Mismatches: 28, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
91 4 0.03
92 70 0.49
96 1 0.01
98 68 0.48
ACGTcount: A:0.22, C:0.27, G:0.16, T:0.36
Consensus pattern (94 bp):
TCCATATCTCTATGGTACAAGATTCACCGTTACGGCTTCAATCTTTCCCATCAAGTCTCTAAGGT
ACAAGGTTTGTCGTTGCGACTTCAACTCC
Found at i:507222 original size:98 final size:98
Alignment explanation
Indices: 507113--507327 Score: 322
Period size: 98 Copynumber: 2.2 Consensus size: 98
507103 GCCATTGCGT
* * * *
507113 CTTCAATCTTTCCCATCATGTCTCTAAGGTACAAAGTTTTTCGTTGCGGCTTCAACCTTTCCCTC
1 CTTCAATCTTTCCCATCAAGTCTCTAAGGTACAAAGTTTGTCGTTACGGCTTCAACCTTTCCCGC
*
507178 CATATCTATAGGGTATTAGATTTACCGTTACGG
66 CATATCTATAGGGTATTAGATTTACCGTTACGA
* * *
507211 CTTCAATCTTTCCCTTCAAGTCTCTAAGGTACAAGGTTTGTCGTTACGGCTTTAACCTTTCCCGC
1 CTTCAATCTTTCCCATCAAGTCTCTAAGGTACAAAGTTTGTCGTTACGGCTTCAACCTTTCCCGC
* **
507276 CATATCTTTAGGGTATTAGATTTGTCGTTACGA
66 CATATCTATAGGGTATTAGATTTACCGTTACGA
*
507309 CTTCAATCTTTCCCTTCAA
1 CTTCAATCTTTCCCATCAA
507328 ACCTATAGAA
Statistics
Matches: 106, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
98 106 1.00
ACGTcount: A:0.21, C:0.26, G:0.15, T:0.39
Consensus pattern (98 bp):
CTTCAATCTTTCCCATCAAGTCTCTAAGGTACAAAGTTTGTCGTTACGGCTTCAACCTTTCCCGC
CATATCTATAGGGTATTAGATTTACCGTTACGA
Found at i:507300 original size:49 final size:49
Alignment explanation
Indices: 507153--507323 Score: 191
Period size: 49 Copynumber: 3.5 Consensus size: 49
507143 ACAAAGTTTT
* *
507153 TCGTTGCGGCTTCAACCTTTCCCTCCATATCTATAGGGTATTAGATTTA
1 TCGTTACGGCTTCAACCTTTCCCTCCATATCTATAGGGTATTAGATTTG
* * * * * ** *
507202 CCGTTACGGCTTCAATCTTTCCCTTCA-AGTCTCTAAGGTACAAGGTTTG
1 TCGTTACGGCTTCAACCTTTCCCTCCATA-TCTATAGGGTATTAGATTTG
* * *
507251 TCGTTACGGCTTTAACCTTTCCCGCCATATCTTTAGGGTATTAGATTTG
1 TCGTTACGGCTTCAACCTTTCCCTCCATATCTATAGGGTATTAGATTTG
* *
507300 TCGTTACGACTTCAATCTTTCCCT
1 TCGTTACGGCTTCAACCTTTCCCT
507324 TCAAACCTAT
Statistics
Matches: 96, Mismatches: 24, Indels: 4
0.77 0.19 0.03
Matches are distributed among these distances:
48 1 0.01
49 94 0.98
50 1 0.01
ACGTcount: A:0.19, C:0.26, G:0.16, T:0.39
Consensus pattern (49 bp):
TCGTTACGGCTTCAACCTTTCCCTCCATATCTATAGGGTATTAGATTTG
Found at i:513619 original size:19 final size:20
Alignment explanation
Indices: 513581--513620 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
513571 AAAATTTTGG
513581 AAAATTTGAGGGTCAAAAAT
1 AAAATTTGAGGGTCAAAAAT
513601 AAAATTTTG-GGGT-AAAAAT
1 AAAA-TTTGAGGGTCAAAAAT
513620 A
1 A
513621 TGAATATAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.37
20 8 0.42
21 4 0.21
ACGTcount: A:0.50, C:0.03, G:0.20, T:0.28
Consensus pattern (20 bp):
AAAATTTGAGGGTCAAAAAT
Found at i:513668 original size:78 final size:79
Alignment explanation
Indices: 513513--513687 Score: 273
Period size: 78 Copynumber: 2.2 Consensus size: 79
513503 TAATTTAAAA
*
513513 CAAAAATGAAAATTTTGGGGTAAAAATATGAAAATAAGGAAAAAAATGGGTCAAAAACAAAATTT
1 CAAAAAT-AAAATTTTGGGGTAAAAATATGAAAATAAGG-AAAAAAGGGGTCAAAAACAAAATTT
513578 TGGAAAATTTGAGGGT
64 TGGAAAATTTGAGGGT
*
513594 CAAAAATAAAATTTTGGGGTAAAAATATGAATATAAGG-AAAAAGGGGTCAAAAACAAAATTTTG
1 CAAAAATAAAATTTTGGGGTAAAAATATGAAAATAAGGAAAAAAGGGGTCAAAAACAAAATTTTG
*
513658 GAAAGTTTGAGGGT
66 GAAAATTTGAGGGT
* *
513672 -TAAAATGAAATTTTGG
1 CAAAAATAAAATTTTGG
513688 AAAGTTTGGG
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
77 14 0.16
78 38 0.43
80 30 0.34
81 7 0.08
ACGTcount: A:0.50, C:0.03, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAAAATAAAATTTTGGGGTAAAAATATGAAAATAAGGAAAAAAGGGGTCAAAAACAAAATTTTG
GAAAATTTGAGGGT
Found at i:513717 original size:59 final size:60
Alignment explanation
Indices: 513648--513856 Score: 171
Period size: 59 Copynumber: 3.5 Consensus size: 60
513638 GGGTCAAAAA
* * *
513648 CAAAATTTTGGAAAGTTTGAGGGT-TAAAATGAAATTTTGGAAAGTTTGGGGGCTAAATT
1 CAAATTTTTGGAAAGTTTGAGGATATAAAATAAAATTTTGGAAAGTTTGGGGGCTAAATT
* * * * * * * *
513707 CTAATTTTTGGAAAG-CTCA-GATATCAAATTTAAATTTTTGAAAAGTTTAGGGGTTAAATT
1 CAAATTTTTGGAAAGTTTGAGGATAT-AAA-ATAAAATTTTGGAAAGTTTGGGGGCTAAATT
* * * * *
513767 CAAATTTTTAG-AAGTTTTG-GGATCA-AAAACAAAATTTTGGAAACTTCGAGGGCTAAATT
1 CAAATTTTTGGAAAG-TTTGAGGAT-ATAAAATAAAATTTTGGAAAGTTTGGGGGCTAAATT
* *
513826 CAAATTTTTGGAAAGTTCGAGGGT-TAAAATA
1 CAAATTTTTGGAAAGTTTGAGGATATAAAATA
513857 TCATTTTTAA
Statistics
Matches: 112, Mismatches: 28, Indels: 20
0.70 0.17 0.12
Matches are distributed among these distances:
57 2 0.02
58 3 0.03
59 59 0.53
60 43 0.38
61 4 0.04
62 1 0.01
ACGTcount: A:0.37, C:0.07, G:0.21, T:0.35
Consensus pattern (60 bp):
CAAATTTTTGGAAAGTTTGAGGATATAAAATAAAATTTTGGAAAGTTTGGGGGCTAAATT
Found at i:513845 original size:30 final size:30
Alignment explanation
Indices: 513648--513853 Score: 136
Period size: 30 Copynumber: 6.9 Consensus size: 30
513638 GGGTCAAAAA
* * *
513648 CAAAATTTTGGAAAGTTTGAGGGTTAAAAT
1 CAAATTTTTGGAAAGTTCGAGGGTTAAATT
* * * *
513678 GAAA-TTTTGGAAAGTTTGGGGGCTAAATT
1 CAAATTTTTGGAAAGTTCGAGGGTTAAATT
* * *
513707 CTAATTTTTGGAAAGCTC-A-GATATCAAATT
1 CAAATTTTTGGAAAGTTCGAGGGT-T-AAATT
* * *
513737 TAAATTTTTGAAAAGTT-TAGGGGTTAAATT
1 CAAATTTTTGGAAAGTTCGA-GGGTTAAATT
* * * * **
513767 CAAATTTTTAG-AAGTTTTG-GGATCAAAAA
1 CAAATTTTTGGAAAG-TTCGAGGGTTAAATT
* * *
513796 CAAAATTTTGGAAACTTCGAGGGCTAAATT
1 CAAATTTTTGGAAAGTTCGAGGGTTAAATT
513826 CAAATTTTTGGAAAGTTCGAGGGTTAAA
1 CAAATTTTTGGAAAGTTCGAGGGTTAAA
513854 ATATCATTTT
Statistics
Matches: 130, Mismatches: 36, Indels: 20
0.70 0.19 0.11
Matches are distributed among these distances:
28 1 0.01
29 46 0.35
30 80 0.62
31 1 0.01
32 2 0.02
ACGTcount: A:0.37, C:0.07, G:0.21, T:0.35
Consensus pattern (30 bp):
CAAATTTTTGGAAAGTTCGAGGGTTAAATT
Found at i:515079 original size:12 final size:11
Alignment explanation
Indices: 515062--515095 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
515052 TTTAAATTAA
515062 ATTTATTTATTT
1 ATTTATTT-TTT
515074 ATTTATTTTTT
1 ATTTATTTTTT
515085 AGTTTATTTTT
1 A-TTTATTTTT
515096 GGGTTTGGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 4 0.19
12 17 0.81
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (11 bp):
ATTTATTTTTT
Found at i:517618 original size:29 final size:29
Alignment explanation
Indices: 517554--517622 Score: 122
Period size: 28 Copynumber: 2.4 Consensus size: 29
517544 ACAATAATTT
517554 TAAATAGGGTATCTCTGTTTTTGTACATAA
1 TAAA-AGGGTATCTCTGTTTTTGTACATAA
517584 T-AAAGGGTATCTCTGTTTTTGTACATAA
1 TAAAAGGGTATCTCTGTTTTTGTACATAA
517612 TAAAAGGGTAT
1 TAAAAGGGTAT
517623 ATGGATTACG
Statistics
Matches: 38, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
28 26 0.68
29 11 0.29
30 1 0.03
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.41
Consensus pattern (29 bp):
TAAAAGGGTATCTCTGTTTTTGTACATAA
Found at i:520185 original size:14 final size:14
Alignment explanation
Indices: 520168--520197 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
520158 AGAGTTTAAA
520168 AAATTTAATTAATT
1 AAATTTAATTAATT
*
520182 AAATTTATTTAATT
1 AAATTTAATTAATT
520196 AA
1 AA
520198 TTATTTAGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
AAATTTAATTAATT
Found at i:520210 original size:18 final size:17
Alignment explanation
Indices: 520170--520204 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
520160 AGTTTAAAAA
520170 ATTTAATTAATTAAATTT
1 ATTTAATTAATT-AATTT
520188 ATTTAATTAATT-ATTT
1 ATTTAATTAATTAATTT
520204 A
1 A
520205 GTTTTATTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
18 12 0.71
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
ATTTAATTAATTAATTT
Found at i:520722 original size:30 final size:30
Alignment explanation
Indices: 520683--520836 Score: 204
Period size: 30 Copynumber: 5.1 Consensus size: 30
520673 TATTAAAATC
520683 GGGTCAAATTTGAATTTTTAGAAAGTTTAA
1 GGGTCAAATTTGAATTTTTAGAAAGTTTAA
* *
520713 GGGTTAAATTTGAATTTTTAGAAAGTTTAG
1 GGGTCAAATTTGAATTTTTAGAAAGTTTAA
* *
520743 GGGTTAAATTGGAATTTTTAGAAAGTTT-A
1 GGGTCAAATTTGAATTTTTAGAAAGTTTAA
*
520772 GGGTCAAATTTGAATTTTT-GAAAAGTTTTA
1 GGGTCAAATTTGAATTTTTAG-AAAGTTTAA
* * *
520802 TGGTCAAATTTGAATTTTTGGACAGTTTTAA
1 GGGTCAAATTTGAATTTTTAGAAAG-TTTAA
520833 GGGT
1 GGGT
520837 AAAAATATAA
Statistics
Matches: 110, Mismatches: 10, Indels: 7
0.87 0.08 0.06
Matches are distributed among these distances:
28 1 0.01
29 24 0.22
30 77 0.70
31 8 0.07
ACGTcount: A:0.32, C:0.03, G:0.23, T:0.42
Consensus pattern (30 bp):
GGGTCAAATTTGAATTTTTAGAAAGTTTAA
Found at i:520797 original size:59 final size:60
Alignment explanation
Indices: 520683--520836 Score: 197
Period size: 59 Copynumber: 2.6 Consensus size: 60
520673 TATTAAAATC
* *
520683 GGGTCAAATTTGAATTTTTAGAAAGTTTAAGGGTTAAATTTGAATTTTTAGAAAGTTTAG
1 GGGTCAAATTGGAATTTTTAGAAAGTTTAAGGGTCAAATTTGAATTTTTAGAAAGTTTAG
*
520743 GGGTTAAATTGGAATTTTTAGAAAGTTT-AGGGTCAAATTTGAATTTTT-GAAAAGTTTTA-
1 GGGTCAAATTGGAATTTTTAGAAAGTTTAAGGGTCAAATTTGAATTTTTAG-AAAG-TTTAG
* * * *
520802 TGGTCAAATTTGAATTTTTGGACAGTTTTAAGGGT
1 GGGTCAAATTGGAATTTTTAGAAAG-TTTAAGGGT
520837 AAAAATATAA
Statistics
Matches: 82, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
58 1 0.01
59 43 0.52
60 33 0.40
61 5 0.06
ACGTcount: A:0.32, C:0.03, G:0.23, T:0.42
Consensus pattern (60 bp):
GGGTCAAATTGGAATTTTTAGAAAGTTTAAGGGTCAAATTTGAATTTTTAGAAAGTTTAG
Found at i:520851 original size:89 final size:89
Alignment explanation
Indices: 520683--520850 Score: 221
Period size: 89 Copynumber: 1.9 Consensus size: 89
520673 TATTAAAATC
* * *
520683 GGGTCAAATTTGAATTTTTAGAAAGTTTAAGGGTTAAATTTGAATTTTTAGAAAGTTTAGGGGTT
1 GGGTCAAATTTGAATTTTTAGAAAGTTTAAGGGTCAAATTTGAATTTTTAGAAAGTTTAAGGGTA
* *
520748 AAATTGGAATTTTTAGAAAGTTTA
66 AAAATAGAATTTTTAGAAAGTTTA
* * * *
520772 GGGTCAAATTTGAATTTTT-GAAAAGTTTTATGGTCAAATTTGAATTTTTGGACAGTTTTAAGGG
1 GGGTCAAATTTGAATTTTTAG-AAAGTTTAAGGGTCAAATTTGAATTTTTAGAAAG-TTTAAGGG
*
520836 TAAAAATATAATTTT
64 TAAAAATAGAATTTT
520851 AAAATAAAGC
Statistics
Matches: 67, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
88 1 0.01
89 48 0.72
90 18 0.27
ACGTcount: A:0.35, C:0.02, G:0.21, T:0.42
Consensus pattern (89 bp):
GGGTCAAATTTGAATTTTTAGAAAGTTTAAGGGTCAAATTTGAATTTTTAGAAAGTTTAAGGGTA
AAAATAGAATTTTTAGAAAGTTTA
Found at i:522008 original size:20 final size:19
Alignment explanation
Indices: 521983--522023 Score: 64
Period size: 20 Copynumber: 2.1 Consensus size: 19
521973 TTTATTATTT
521983 ATAAATAAATACAAATGAAA
1 ATAAATAAATA-AAATGAAA
*
522003 ATAAATAAATAAAATTAAA
1 ATAAATAAATAAAATGAAA
522022 AT
1 AT
522024 GGAATTGGGC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (19 bp):
ATAAATAAATAAAATGAAA
Found at i:522142 original size:22 final size:22
Alignment explanation
Indices: 522109--522151 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
522099 TTACATTTAT
*
522109 AAAATGATAAATACATAAAATA
1 AAAATGATAAATAAATAAAATA
522131 AAAAT-ATAAAATAAATAAAAT
1 AAAATGAT-AAATAAATAAAAT
522152 TGAGTTTTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.23
Consensus pattern (22 bp):
AAAATGATAAATAAATAAAATA
Found at i:522262 original size:77 final size:77
Alignment explanation
Indices: 522135--522381 Score: 476
Period size: 77 Copynumber: 3.2 Consensus size: 77
522125 AAAATAAAAA
*
522135 TATAAAATAAATAAAATTGAGTTTTGTAAAGGGGCTTGTTAATTTTGGTTTAGTTTTCATTTTTA
1 TATAAAATAAATAAAATTGAGTTTTGTAAAGGGGCTTGTTAATTTTGGTTTAGTATTCATTTTTA
522200 TTTAATTATATT
66 TTTAATTATATT
522212 TATAAAATAAATAAAATTGAGTTTTGTAAAGGGGCTTGTTAATTTTGGTTTAGTATTCATTTTTA
1 TATAAAATAAATAAAATTGAGTTTTGTAAAGGGGCTTGTTAATTTTGGTTTAGTATTCATTTTTA
522277 TTTAATTATATT
66 TTTAATTATATT
522289 TATAAAATAAATAAAATTGAGTTTTGTAAAGGGGCTTGTTAATTTTGGTTTAGTATTCATTTTTA
1 TATAAAATAAATAAAATTGAGTTTTGTAAAGGGGCTTGTTAATTTTGGTTTAGTATTCATTTTTA
*
522354 TTTATTTATATT
66 TTTAATTATATT
522366 TATAAAATAAATAAAA
1 TATAAAATAAATAAAA
522382 ATAAAAATAA
Statistics
Matches: 168, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
77 168 1.00
ACGTcount: A:0.36, C:0.02, G:0.13, T:0.49
Consensus pattern (77 bp):
TATAAAATAAATAAAATTGAGTTTTGTAAAGGGGCTTGTTAATTTTGGTTTAGTATTCATTTTTA
TTTAATTATATT
Found at i:523186 original size:50 final size:49
Alignment explanation
Indices: 523091--523232 Score: 133
Period size: 50 Copynumber: 2.9 Consensus size: 49
523081 CACCCTTACG
* * * *
523091 GCTTCAATCTGCCCCTTTA-AAGCTTTAGGCATATGAGGTTCGCCATTGC
1 GCTTCAATCTGCCCCTCTACAA-CTTTAGGCGTATAAGATTCGCCATTGC
* * *
523140 AGCTTCAATCTACCCCTCTACAACTTTAGGTGTATAAGATTTGCCATTGC
1 -GCTTCAATCTGCCCCTCTACAACTTTAGGCGTATAAGATTCGCCATTGC
* * ** * *
523190 GACTTTAATCCGTTCCTCTACAGCTTTAGGGGTATAAGATTCG
1 G-CTTCAATCTGCCCCTCTACAACTTTAGGCGTATAAGATTCG
523233 TTGTTTTGTC
Statistics
Matches: 75, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
49 1 0.01
50 72 0.96
51 2 0.03
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (49 bp):
GCTTCAATCTGCCCCTCTACAACTTTAGGCGTATAAGATTCGCCATTGC
Found at i:531760 original size:26 final size:26
Alignment explanation
Indices: 531730--531789 Score: 111
Period size: 26 Copynumber: 2.3 Consensus size: 26
531720 CTTAGCTACC
*
531730 TGGCTTTCAACTCATCTTTGTCGACT
1 TGGCTTTCAACTCAGCTTTGTCGACT
531756 TGGCTTTCAACTCAGCTTTGTCGACT
1 TGGCTTTCAACTCAGCTTTGTCGACT
531782 TGGCTTTC
1 TGGCTTTC
531790 TAGCAGCCCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.13, C:0.27, G:0.18, T:0.42
Consensus pattern (26 bp):
TGGCTTTCAACTCAGCTTTGTCGACT
Found at i:536956 original size:59 final size:58
Alignment explanation
Indices: 536883--537165 Score: 381
Period size: 59 Copynumber: 4.8 Consensus size: 58
536873 ACTCAAGGGC
* * * * *
536883 AAAATGGTAATTTTGGAAGTTCGAGGATAAAATGGTAATTTTTGGAAGATTTGGGGTTA
1 AAAATGGGATTTTTGGAA-TTCGAGGGTAAAATGGTAATTTTTGGAAGCTTCGGGGTTA
* * * * *
536942 AAAATGTGATTTTTGGAAGTTCGGGGGTAAGATGGTAA-TTTTGGAAGCTTCGAGGTCAA
1 AAAATGGGATTTTTGGAA-TTCGAGGGTAAAATGGTAATTTTTGGAAGCTTCGGGGT-TA
*
537001 AAAATGGGATTTTTGGGAATTCGAGGGTAAAACGGTAA-TTTTGGAAGCTTCGGGGTTA
1 AAAATGGGATTTTT-GGAATTCGAGGGTAAAATGGTAATTTTTGGAAGCTTCGGGGTTA
*
537059 AAAATGGGATTTTTGGAAATTCGAGGGTAAAACGGTAATTTTTGGAAGCTTCGGGGTTA
1 AAAATGGGATTTTTGG-AATTCGAGGGTAAAATGGTAATTTTTGGAAGCTTCGGGGTTA
*
537118 AAAATGGGATTTTTAGGAATTCGGGGGTAAAATGGTAATTTTTGGAAG
1 AAAATGGGATTTTT-GGAATTCGAGGGTAAAATGGTAATTTTTGGAAG
537166 GTTTAGGGAC
Statistics
Matches: 201, Mismatches: 18, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
57 2 0.01
58 51 0.25
59 142 0.71
60 6 0.03
ACGTcount: A:0.31, C:0.05, G:0.31, T:0.33
Consensus pattern (58 bp):
AAAATGGGATTTTTGGAATTCGAGGGTAAAATGGTAATTTTTGGAAGCTTCGGGGTTA
Found at i:537072 original size:117 final size:117
Alignment explanation
Indices: 536883--537165 Score: 390
Period size: 117 Copynumber: 2.4 Consensus size: 117
536873 ACTCAAGGGC
* * * *
536883 AAAATGGTAATTTTGGAAGTTCGAGGATAAAATGGTAATTTTTGGAAGATTTGGGGTTAAAAATG
1 AAAATGGGATTTTTGGAA-TTCGAGGGTAAAATGGTAATTTTTGGAAGATTCGGGGTTAAAAATG
* * * * *
536948 TGATTTTTGGAAGTTCGGGGGTAAGATGGTAA-TTTTGGAAGCTTCGAGGTCAA
65 GGATTTTTGGAAATTCGAGGGTAAAACGGTAATTTTTGGAAGCTTCGAGGT-AA
* *
537001 AAAATGGGATTTTTGGGAATTCGAGGGTAAAACGGTAA-TTTTGGAAGCTTCGGGGTTAAAAATG
1 AAAATGGGATTTTT-GGAATTCGAGGGTAAAATGGTAATTTTTGGAAGATTCGGGGTTAAAAATG
* *
537065 GGATTTTTGGAAATTCGAGGGTAAAACGGTAATTTTTGGAAGCTTCGGGGTTA
65 GGATTTTTGGAAATTCGAGGGTAAAACGGTAATTTTTGGAAGCTTCGAGGTAA
*
537118 AAAATGGGATTTTTAGGAATTCGGGGGTAAAATGGTAATTTTTGGAAG
1 AAAATGGGATTTTT-GGAATTCGAGGGTAAAATGGTAATTTTTGGAAG
537166 GTTTAGGGAC
Statistics
Matches: 146, Mismatches: 16, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
117 87 0.60
118 55 0.38
119 4 0.03
ACGTcount: A:0.31, C:0.05, G:0.31, T:0.33
Consensus pattern (117 bp):
AAAATGGGATTTTTGGAATTCGAGGGTAAAATGGTAATTTTTGGAAGATTCGGGGTTAAAAATGG
GATTTTTGGAAATTCGAGGGTAAAACGGTAATTTTTGGAAGCTTCGAGGTAA
Found at i:537140 original size:29 final size:29
Alignment explanation
Indices: 536883--537165 Score: 206
Period size: 29 Copynumber: 9.7 Consensus size: 29
536873 ACTCAAGGGC
* * * *
536883 AAAATGGTAATTTTGGAAGTTCGAGGAT-
1 AAAATGGGATTTTTGGAAGTTCGGGGTTA
* *
536911 AAAATGGTAATTTTTGGAAGATTTGGGGTTA
1 AAAATGG-GATTTTTGGAAG-TTCGGGGTTA
* *
536942 AAAATGTGATTTTTGGAAGTTCGGGGGT-
1 AAAATGGGATTTTTGGAAGTTCGGGGTTA
* * * * *
536970 AAGATGGTAATTTTGGAAGCTTCGAGGTCAA
1 AAAATGGGATTTTTGGAAG-TTCGGGGT-TA
537001 AAAATGGGATTTTTGGGAA-TTCGAGGG-T-
1 AAAATGGGATTTTT-GGAAGTTCG-GGGTTA
* * *
537029 AAAACGGTAATTTTGGAAGCTTCGGGGTTA
1 AAAATGGGATTTTTGGAAG-TTCGGGGTTA
*
537059 AAAATGGGATTTTTGGAAATTCGAGGG-T-
1 AAAATGGGATTTTTGGAAGTTCG-GGGTTA
* *
537087 AAAACGGTAATTTTTGGAAGCTTCGGGGTTA
1 AAAATGG-GATTTTTGGAAG-TTCGGGGTTA
*
537118 AAAATGGGATTTTTAGGAA-TTCGGGGGT-
1 AAAATGGGATTTTT-GGAAGTTCGGGGTTA
*
537146 AAAATGGTAATTTTTGGAAG
1 AAAATGG-GATTTTTGGAAG
537166 GTTTAGGGAC
Statistics
Matches: 200, Mismatches: 35, Indels: 39
0.73 0.13 0.14
Matches are distributed among these distances:
27 4 0.02
28 53 0.26
29 60 0.30
30 50 0.25
31 29 0.14
32 4 0.02
ACGTcount: A:0.31, C:0.05, G:0.31, T:0.33
Consensus pattern (29 bp):
AAAATGGGATTTTTGGAAGTTCGGGGTTA
Found at i:538548 original size:59 final size:58
Alignment explanation
Indices: 538475--538757 Score: 381
Period size: 59 Copynumber: 4.8 Consensus size: 58
538465 ACTCAAGGGC
* * * * *
538475 AAAATGGTAATTTTGGAAGTTCGAGGATAAAATGGTAATTTTTGGAAGATTTGGGGTTA
1 AAAATGGGATTTTTGGAA-TTCGAGGGTAAAATGGTAATTTTTGGAAGCTTCGGGGTTA
* * * * *
538534 AAAATGTGATTTTTGGAAGTTCGGGGGTAAGATGGTAA-TTTTGGAAGCTTCGAGGTCAA
1 AAAATGGGATTTTTGGAA-TTCGAGGGTAAAATGGTAATTTTTGGAAGCTTCGGGGT-TA
*
538593 AAAATGGGATTTTTGGGAATTCGAGGGTAAAACGGTAA-TTTTGGAAGCTTCGGGGTTA
1 AAAATGGGATTTTT-GGAATTCGAGGGTAAAATGGTAATTTTTGGAAGCTTCGGGGTTA
*
538651 AAAATGGGATTTTTGGAAATTCGAGGGTAAAACGGTAATTTTTGGAAGCTTCGGGGTTA
1 AAAATGGGATTTTTGG-AATTCGAGGGTAAAATGGTAATTTTTGGAAGCTTCGGGGTTA
*
538710 AAAATGGGATTTTTAGGAATTCGGGGGTAAAATGGTAATTTTTGGAAG
1 AAAATGGGATTTTT-GGAATTCGAGGGTAAAATGGTAATTTTTGGAAG
538758 GTTTAGGGAC
Statistics
Matches: 201, Mismatches: 18, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
57 2 0.01
58 51 0.25
59 142 0.71
60 6 0.03
ACGTcount: A:0.31, C:0.05, G:0.31, T:0.33
Consensus pattern (58 bp):
AAAATGGGATTTTTGGAATTCGAGGGTAAAATGGTAATTTTTGGAAGCTTCGGGGTTA
Found at i:538664 original size:117 final size:117
Alignment explanation
Indices: 538475--538757 Score: 390
Period size: 117 Copynumber: 2.4 Consensus size: 117
538465 ACTCAAGGGC
* * * *
538475 AAAATGGTAATTTTGGAAGTTCGAGGATAAAATGGTAATTTTTGGAAGATTTGGGGTTAAAAATG
1 AAAATGGGATTTTTGGAA-TTCGAGGGTAAAATGGTAATTTTTGGAAGATTCGGGGTTAAAAATG
* * * * *
538540 TGATTTTTGGAAGTTCGGGGGTAAGATGGTAA-TTTTGGAAGCTTCGAGGTCAA
65 GGATTTTTGGAAATTCGAGGGTAAAACGGTAATTTTTGGAAGCTTCGAGGT-AA
* *
538593 AAAATGGGATTTTTGGGAATTCGAGGGTAAAACGGTAA-TTTTGGAAGCTTCGGGGTTAAAAATG
1 AAAATGGGATTTTT-GGAATTCGAGGGTAAAATGGTAATTTTTGGAAGATTCGGGGTTAAAAATG
* *
538657 GGATTTTTGGAAATTCGAGGGTAAAACGGTAATTTTTGGAAGCTTCGGGGTTA
65 GGATTTTTGGAAATTCGAGGGTAAAACGGTAATTTTTGGAAGCTTCGAGGTAA
*
538710 AAAATGGGATTTTTAGGAATTCGGGGGTAAAATGGTAATTTTTGGAAG
1 AAAATGGGATTTTT-GGAATTCGAGGGTAAAATGGTAATTTTTGGAAG
538758 GTTTAGGGAC
Statistics
Matches: 146, Mismatches: 16, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
117 87 0.60
118 55 0.38
119 4 0.03
ACGTcount: A:0.31, C:0.05, G:0.31, T:0.33
Consensus pattern (117 bp):
AAAATGGGATTTTTGGAATTCGAGGGTAAAATGGTAATTTTTGGAAGATTCGGGGTTAAAAATGG
GATTTTTGGAAATTCGAGGGTAAAACGGTAATTTTTGGAAGCTTCGAGGTAA
Found at i:538732 original size:29 final size:29
Alignment explanation
Indices: 538475--538757 Score: 206
Period size: 29 Copynumber: 9.7 Consensus size: 29
538465 ACTCAAGGGC
* * * *
538475 AAAATGGTAATTTTGGAAGTTCGAGGAT-
1 AAAATGGGATTTTTGGAAGTTCGGGGTTA
* *
538503 AAAATGGTAATTTTTGGAAGATTTGGGGTTA
1 AAAATGG-GATTTTTGGAAG-TTCGGGGTTA
* *
538534 AAAATGTGATTTTTGGAAGTTCGGGGGT-
1 AAAATGGGATTTTTGGAAGTTCGGGGTTA
* * * * *
538562 AAGATGGTAATTTTGGAAGCTTCGAGGTCAA
1 AAAATGGGATTTTTGGAAG-TTCGGGGT-TA
538593 AAAATGGGATTTTTGGGAA-TTCGAGGG-T-
1 AAAATGGGATTTTT-GGAAGTTCG-GGGTTA
* * *
538621 AAAACGGTAATTTTGGAAGCTTCGGGGTTA
1 AAAATGGGATTTTTGGAAG-TTCGGGGTTA
*
538651 AAAATGGGATTTTTGGAAATTCGAGGG-T-
1 AAAATGGGATTTTTGGAAGTTCG-GGGTTA
* *
538679 AAAACGGTAATTTTTGGAAGCTTCGGGGTTA
1 AAAATGG-GATTTTTGGAAG-TTCGGGGTTA
*
538710 AAAATGGGATTTTTAGGAA-TTCGGGGGT-
1 AAAATGGGATTTTT-GGAAGTTCGGGGTTA
*
538738 AAAATGGTAATTTTTGGAAG
1 AAAATGG-GATTTTTGGAAG
538758 GTTTAGGGAC
Statistics
Matches: 200, Mismatches: 35, Indels: 39
0.73 0.13 0.14
Matches are distributed among these distances:
27 4 0.02
28 53 0.26
29 60 0.30
30 50 0.25
31 29 0.14
32 4 0.02
ACGTcount: A:0.31, C:0.05, G:0.31, T:0.33
Consensus pattern (29 bp):
AAAATGGGATTTTTGGAAGTTCGGGGTTA
Found at i:540353 original size:15 final size:15
Alignment explanation
Indices: 540335--540388 Score: 81
Period size: 15 Copynumber: 3.6 Consensus size: 15
540325 TTTCGGGCAC
540335 TTTGTAATTGGGCCA
1 TTTGTAATTGGGCCA
*
540350 TTTGTATTTGGGCCA
1 TTTGTAATTGGGCCA
* *
540365 TCTGTAACTGGGCCA
1 TTTGTAATTGGGCCA
540380 TTTGTAATT
1 TTTGTAATT
540389 TGGACTTTTG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 33 1.00
ACGTcount: A:0.19, C:0.15, G:0.24, T:0.43
Consensus pattern (15 bp):
TTTGTAATTGGGCCA
Found at i:540450 original size:17 final size:17
Alignment explanation
Indices: 540428--540490 Score: 92
Period size: 17 Copynumber: 3.7 Consensus size: 17
540418 TGGACTTTTC
540428 TAAATTT-AATTTCATAA
1 TAAATTTAAATTTCA-AA
540445 TAAATTTAAATTTCAAA
1 TAAATTTAAATTTCAAA
*
540462 TAAATTTAAATTTAAAA
1 TAAATTTAAATTTCAAA
*
540479 TAAACTTAAATT
1 TAAATTTAAATT
540491 CAATTTCCAA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
17 36 0.84
18 7 0.16
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (17 bp):
TAAATTTAAATTTCAAA
Found at i:541233 original size:139 final size:139
Alignment explanation
Indices: 540998--541266 Score: 351
Period size: 139 Copynumber: 1.9 Consensus size: 139
540988 ATTCGCTTAT
* * * *
540998 GAATTTGGTTTACTTCTCAGTACCTCATCTGGAAGATCTGCGCGTTTCAAGCCTCATTTGGGTCT
1 GAATCTGGTTCACTTCTCAGTACCTCATCAGGAAGATCTGCGCGTTTCAAGCCTCATTTGAGTCT
* *
541063 CCTTCTCAGCGTCTCAGCGGGAAGATGATCCCATCACAGTTTCGATCCATTTCTCTGTATCTCAT
66 CCTTCTCAGCGTCTCAGCAGGAAGATGATCCCATCACAGTTTCGACCCATTTCTCTGTATCTCAT
541128 TAGGAAGAC
131 TAGGAAGAC
* * * * * * *
541137 GAATCTGGTTCACTTCTCCGTATCTTATCAGGAAGATTTGCTC-TCTTCGAGCCTCATTTGAGTT
1 GAATCTGGTTCACTTCTCAGTACCTCATCAGGAAGATCTGCGCGT-TTCAAGCCTCATTTGAGTC
* * * * * *
541201 TTCTTCTCAGTGTCTCATCAGGAAGATGATCCCATCGCTGTTTCGACCCGTTTCTCTGTATCTCA
65 TCCTTCTCAGCGTCTCAGCAGGAAGATGATCCCATCACAGTTTCGACCCATTTCTCTGTATCTCA
541266 T
130 T
541267 CAGNNNNNNN
Statistics
Matches: 110, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
138 1 0.01
139 109 0.99
ACGTcount: A:0.19, C:0.26, G:0.19, T:0.36
Consensus pattern (139 bp):
GAATCTGGTTCACTTCTCAGTACCTCATCAGGAAGATCTGCGCGTTTCAAGCCTCATTTGAGTCT
CCTTCTCAGCGTCTCAGCAGGAAGATGATCCCATCACAGTTTCGACCCATTTCTCTGTATCTCAT
TAGGAAGAC
Found at i:541457 original size:139 final size:138
Alignment explanation
Indices: 541280--541899 Score: 997
Period size: 139 Copynumber: 4.5 Consensus size: 138
541270 NNNNNNNNNN
* * * *
541280 GAAGATGATCCCATCGCTGTTTCGACCCGTTTCTCTGTATCTCATCAGGAAGACGAATTTGGTTC
1 GAAGATGATCCCATCACTGTTTCGATCCGTTTCTCTGTATCTCATCAGGAAGACGAATCTGCTTC
* * *
541345 ACTTCTTCATATCTCATCAGGAAGATTTGCTCATTTCGAGCCTTGTTTGAGTTTTCTTCTCAGTG
66 ACTTCTCCGTATCTCATCAGGAAGATTTGCTCGTTTCGAGCCTTGTTTG-GTTTTCTTCTCAGTG
*
541410 TCTCATCAA
130 TCTCATCAG
* * * *
541419 GAAGATGATCCCATCGCTGTTTCGACCCGTTTCTCTGTATCTCATCAGAAAGACGAATCTGGTTC
1 GAAGATGATCCCATCACTGTTTCGATCCGTTTCTCTGTATCTCATCAGGAAGACGAATCTGCTTC
541484 ACTTCTCCGTATCTCATCAGGAAGATTTGCTCGTTTCGAGCCTTGTTTTGGTTTTCTTCTCAGTG
66 ACTTCTCCGTATCTCATCAGGAAGATTTGCTCGTTTCGAGCCTTG-TTTGGTTTTCTTCTCAGTG
541549 TCTCATCAG
130 TCTCATCAG
* * *
541558 GAAGATGATCCCATCACTATTTCGATCCGTTTCTCTATATCTCATCAGGAAGACGAATCTGCTTT
1 GAAGATGATCCCATCACTGTTTCGATCCGTTTCTCTGTATCTCATCAGGAAGACGAATCTGCTTC
541623 ACTTCTCCGTATCTCATCAGGAAGATTTGCTCGTTTCGAGCCTTGTTTGGGTTTTCTTCTCAGTG
66 ACTTCTCCGTATCTCATCAGGAAGATTTGCTCGTTTCGAGCCTTGTTT-GGTTTTCTTCTCAGTG
*
541688 TCTCATTAG
130 TCTCATCAG
* *
541697 GAAGATGATCCCATCACTGTTTCGATCCGTTTCTCTGTATCTCATCAGAAAGACGAATCTGCTTT
1 GAAGATGATCCCATCACTGTTTCGATCCGTTTCTCTGTATCTCATCAGGAAGACGAATCTGCTTC
*
541762 ACTTCTCCGTATCTCATCAGGAAGATTTGCTCGTTTCGAGCCTTGTTTGGATTTTCTTCTCGGTG
66 ACTTCTCCGTATCTCATCAGGAAGATTTGCTCGTTTCGAGCCTTGTTTGG-TTTTCTTCTCAGTG
541827 TCTCATCAG
130 TCTCATCAG
* * * *
541836 GAAGATGATCCCATCACAGTTTCGATTCATTTCTCTGTATCTCATCAGGAAGATGAATCTGCTT
1 GAAGATGATCCCATCACTGTTTCGATCCGTTTCTCTGTATCTCATCAGGAAGACGAATCTGCTT
541900 TGTGGATAAT
Statistics
Matches: 454, Mismatches: 24, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
138 5 0.01
139 445 0.98
140 4 0.01
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.37
Consensus pattern (138 bp):
GAAGATGATCCCATCACTGTTTCGATCCGTTTCTCTGTATCTCATCAGGAAGACGAATCTGCTTC
ACTTCTCCGTATCTCATCAGGAAGATTTGCTCGTTTCGAGCCTTGTTTGGTTTTCTTCTCAGTGT
CTCATCAG
Done.