genome.fa.s11134.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011134.1 Kokia drynarioides strain JFW-HI SEQ_126107, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  426376

Tables:   1   

This is table  1  of  1  ( 105 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112--158	4	11.8	4	84	8	60	2	21	0	76	0.89
93--146	22	2.5	22	82	8	58	0	29	0	70	0.88
115--164	12	4.2	12	82	14	59	4	18	0	78	0.91
1220--1249	7	4.3	7	100	0	60	13	26	30	30	1.94
1641--1677	17	2.2	17	90	0	56	78	5	2	13	1.03
3768--3792	1	25.0	1	100	0	50	100	0	0	0	0.00
6150--6185	3	12.0	3	87	0	54	66	5	0	27	1.13
6151--6189	12	3.2	12	88	0	60	66	7	0	25	1.18
6151--6189	6	6.5	6	90	0	51	66	7	0	25	1.18
11788--11868	23	3.5	23	85	9	112	9	23	23	43	1.83
17574--17625	22	2.4	22	90	0	77	44	21	25	9	1.82
37432--37488	24	2.4	24	85	2	80	38	19	14	28	1.90
43811--43851	21	2.0	20	85	4	55	51	7	0	41	1.30
45085--45147	20	3.4	18	72	21	58	20	1	3	74	1.04
45083--45137	20	2.8	19	75	2	65	23	1	3	70	1.12
58363--58410	24	2.0	25	87	4	71	37	4	0	58	1.18
67969--68028	31	1.9	31	83	6	77	55	5	10	30	1.54
68263--68288	6	4.3	6	100	0	52	19	0	0	80	0.71
72597--72625	8	3.6	8	100	0	58	0	10	0	89	0.48
73124--73200	18	4.4	18	72	9	61	53	3	3	38	1.38
73668--73695	8	3.5	8	100	0	56	14	39	0	46	1.44
76585--76639	27	2.1	27	86	10	78	49	12	1	36	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78777--78818	21	2.0	21	85	0	57	64	4	4	26	1.33
95901--96729	117	7.0	117	87	4	1157	20	27	12	38	1.89
95851--96729	237	3.7	235	86	4	1180	20	27	13	39	1.89
114215--114250	16	2.2	16	90	9	56	69	2	2	25	1.15
114982--115029	3	16.0	3	100	0	96	66	0	0	33	0.92
115509--115548	20	2.0	20	85	0	53	22	10	12	55	1.67
128541--128583	21	2.0	21	82	8	52	13	11	9	65	1.48
128409--129056	329	2.0	328	96	0	1190	26	12	15	45	1.82
131746--131821	30	2.5	30	76	6	82	34	5	5	55	1.45
132313--132400	31	2.9	31	86	8	110	39	11	3	45	1.57
138158--138207	8	6.2	8	73	17	50	40	2	0	58	1.10
146509--146533	3	8.3	3	100	0	50	68	0	32	0	0.90
147852--147878	13	2.1	13	100	0	54	48	22	7	22	1.75
163683--163849	82	2.0	82	98	0	325	34	13	10	40	1.80
165841--165877	17	2.1	17	90	5	56	54	0	0	45	1.00
171724--171754	6	5.0	6	96	4	53	0	32	19	48	1.49
171722--171754	12	2.6	13	90	9	59	0	30	21	48	1.50
172648--172681	17	2.0	17	100	0	68	52	5	0	41	1.25
175579--175603	11	2.3	11	100	0	50	84	0	0	16	0.63
176471--176499	10	2.9	10	100	0	58	62	10	10	17	1.54
181430--181455	2	13.0	2	100	0	52	50	0	0	50	1.00
182074--182121	25	1.9	25	83	8	62	50	4	2	43	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
197833--197882	22	2.2	23	82	10	59	66	16	6	12	1.43
198575--198618	14	3.1	14	86	3	61	31	2	9	56	1.43
205464--205502	20	1.9	21	84	5	53	51	0	5	43	1.24
209906--210036	66	2.0	66	100	0	262	30	7	7	54	1.57
211940--212002	31	2.0	31	87	0	90	39	14	4	41	1.67
212154--212183	7	4.4	7	95	4	53	90	0	10	0	0.47
218582--218626	21	2.2	20	84	4	54	42	2	0	55	1.12
221459--221489	12	2.6	12	89	0	53	6	3	64	25	1.33
222103--222141	19	2.1	19	85	0	51	33	2	5	58	1.33
224846--224893	6	7.8	6	86	4	69	20	0	2	77	0.88
225112--225149	14	2.6	15	91	4	60	52	2	0	44	1.14
227472--227518	16	2.9	17	84	9	71	21	0	4	74	0.99
227463--227507	23	2.0	22	87	8	65	20	0	2	77	0.87
229287--229536	29	8.6	29	73	14	151	32	4	27	35	1.77
229276--229536	88	3.0	86	75	10	244	32	4	27	34	1.77
229284--229580	58	5.1	58	78	9	239	31	4	28	35	1.77
229382--229581	30	6.8	29	70	17	135	32	4	27	36	1.75
231164--231243	17	4.6	17	83	9	92	52	1	0	46	1.08
231151--231199	24	2.1	23	92	3	80	48	0	2	48	1.12
231164--231239	34	2.2	35	88	6	111	51	1	0	47	1.09
247259--247283	2	12.5	2	100	0	50	52	0	48	0	1.00
260420--260485	29	2.2	31	89	5	100	48	3	1	46	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
268241--268280	21	1.9	21	94	0	71	30	0	2	67	1.04
276632--276711	39	2.1	39	100	0	160	47	5	27	20	1.70
301788--301893	23	4.7	23	80	10	96	40	25	21	12	1.88
301859--301912	23	2.3	23	90	6	83	40	22	27	9	1.84
302605--302651	23	2.0	23	100	0	94	29	12	8	48	1.71
311053--311086	12	2.8	12	86	0	50	67	14	5	11	1.39
311099--311156	25	2.4	25	85	5	75	75	13	1	8	1.10
311128--311181	22	2.5	22	84	3	65	74	16	5	3	1.16
316584--316612	3	9.7	3	100	0	58	34	31	0	34	1.58
316816--316846	2	15.5	2	100	0	62	51	0	0	48	1.00
316846--316887	2	21.0	2	100	0	84	50	0	50	0	1.00
322558--322588	2	15.5	2	93	0	53	48	0	0	51	1.00
338804--338829	12	2.2	12	100	0	52	92	0	7	0	0.39
339228--339302	37	2.0	37	97	0	141	21	22	20	36	1.96
339615--339657	21	2.1	20	83	12	52	39	4	2	53	1.34
340768--340793	3	8.7	3	100	0	52	34	0	30	34	1.58
342373--342403	15	2.1	15	93	0	53	54	6	0	38	1.26
343388--343422	15	2.3	15	90	0	52	34	20	37	8	1.83
343385--343425	21	2.0	21	95	0	73	34	19	36	9	1.85
353810--353874	29	2.4	25	71	24	60	32	15	3	49	1.60
354083--354494	217	1.9	214	79	10	462	32	15	18	33	1.92
372065--372099	16	2.1	17	89	5	54	34	0	2	62	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
396809--396833	13	1.9	13	100	0	50	48	8	0	44	1.32
397111--397136	3	8.7	3	100	0	52	30	0	0	69	0.89
400803--400871	32	2.2	32	79	7	79	47	10	13	28	1.74
403055--403096	20	2.1	20	86	8	59	64	2	0	33	1.07
403454--403558	12	9.1	12	77	10	76	67	18	5	8	1.37
403583--403659	12	6.5	12	70	8	68	66	23	6	3	1.32
403572--403645	25	3.2	23	83	9	87	67	20	6	5	1.34
403471--403657	60	3.1	60	78	8	170	65	20	6	6	1.40
403582--403648	25	2.8	24	88	6	93	67	20	7	4	1.34
403926--403966	20	2.0	20	100	0	82	29	14	14	41	1.86
405848--405909	30	2.1	30	82	11	74	27	4	1	66	1.21
418173--418232	19	3.2	20	76	9	63	30	3	1	65	1.19
418171--418233	20	3.4	19	71	16	51	33	3	1	61	1.21
418382--418411	14	2.1	14	93	0	51	63	0	3	33	1.11
418401--418447	23	2.1	23	84	4	60	68	6	0	25	1.13
421214--421241	2	14.0	2	100	0	56	50	0	0	50	1.00
423492--423523	2	16.0	2	100	0	64	50	0	0	50	1.00

Tables:   1

The End!