Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011135.1 Kokia drynarioides strain JFW-HI SEQ_126108, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11605
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.32
Found at i:2041 original size:31 final size:32
Alignment explanation
Indices: 2006--2065 Score: 79
Period size: 31 Copynumber: 1.9 Consensus size: 32
1996 AATAAGCGAG
*
2006 GGAAAAA-GAAAAGAAAATTGAAAA-AAAGAAA
1 GGAAAAATG-AAAGAAAAGTGAAAAGAAAGAAA
*
2037 GGAAAAATGAGAGAAAAGTGAAAAGAAAG
1 GGAAAAATGAAAGAAAAGTGAAAAGAAAG
2066 TGAGAAGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
31 20 0.80
32 5 0.20
ACGTcount: A:0.68, C:0.00, G:0.25, T:0.07
Consensus pattern (32 bp):
GGAAAAATGAAAGAAAAGTGAAAAGAAAGAAA
Found at i:2080 original size:31 final size:28
Alignment explanation
Indices: 2029--2085 Score: 78
Period size: 31 Copynumber: 1.9 Consensus size: 28
2019 AAAATTGAAA
*
2029 AAAAGAAAGGAAAAATGAGAGAAAAGTG
1 AAAAGAAAGGAAAAAAGAGAGAAAAGTG
2057 AAAAGAAAGTGAGAAGAAAGAGAGAAAAG
1 AAAAGAAAG-GA-AA-AAAGAGAGAAAAG
2086 AAAAAGATGA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 9 0.36
29 2 0.08
30 2 0.08
31 12 0.48
ACGTcount: A:0.65, C:0.00, G:0.30, T:0.05
Consensus pattern (28 bp):
AAAAGAAAGGAAAAAAGAGAGAAAAGTG
Found at i:2088 original size:29 final size:27
Alignment explanation
Indices: 2029--2092 Score: 74
Period size: 31 Copynumber: 2.2 Consensus size: 27
2019 AAAATTGAAA
*
2029 AAAAGAAAGGAAAAATGAGAGAAAAGTG
1 AAAAGAAAGGAAAAAAGAGAGAAAAG-G
*
2057 AAAAGAAAGTGAGAAGAAAGAGAGAAAAGA
1 AAAAGAAAG-GA-AA-AAAGAGAGAAAAGG
2087 AAAAGA
1 AAAAGA
2093 TGAAAAGGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
28 9 0.29
29 2 0.06
30 8 0.26
31 12 0.39
ACGTcount: A:0.67, C:0.00, G:0.28, T:0.05
Consensus pattern (27 bp):
AAAAGAAAGGAAAAAAGAGAGAAAAGG
Found at i:5229 original size:39 final size:39
Alignment explanation
Indices: 5185--5271 Score: 156
Period size: 39 Copynumber: 2.2 Consensus size: 39
5175 TAAGTTATTA
5185 AATGTGTCTTAGTTTGATACATATTTAATAGTTGTTTTT
1 AATGTGTCTTAGTTTGATACATATTTAATAGTTGTTTTT
*
5224 AATGTGTCTTATTTTGATACATATTTAATAGTTGTTTTT
1 AATGTGTCTTAGTTTGATACATATTTAATAGTTGTTTTT
*
5263 AAGGTGTCT
1 AATGTGTCT
5272 AAATTTGAGA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.25, C:0.06, G:0.16, T:0.53
Consensus pattern (39 bp):
AATGTGTCTTAGTTTGATACATATTTAATAGTTGTTTTT
Found at i:5361 original size:32 final size:32
Alignment explanation
Indices: 5325--5387 Score: 81
Period size: 32 Copynumber: 2.0 Consensus size: 32
5315 AGCTGAAATT
* *
5325 AATTAACCGATTAATGTGTTTCAAGTACATGC
1 AATTAACCGATTAATATATTTCAAGTACATGC
* * *
5357 AATTAGCTGATTAATATATTTCATGTACATG
1 AATTAACCGATTAATATATTTCAAGTACATG
5388 TATGGATGCC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.35, C:0.13, G:0.14, T:0.38
Consensus pattern (32 bp):
AATTAACCGATTAATATATTTCAAGTACATGC
Found at i:6932 original size:216 final size:215
Alignment explanation
Indices: 6346--7041 Score: 902
Period size: 216 Copynumber: 3.2 Consensus size: 215
6336 AGATCGTATC
* * * * *
6346 AGTTTGTCATTTTCTAAA-AAGGTTTTGTTGTTTGAATTAAAAACTTATTTAAGTGAGAATT-AT
1 AGTTTGTCATTTTGTAAACAA-GTTTTGGTCTTTGAATTAAATACTTATTTACGTGAGAATTGA-
* * * * *
6409 TTCTCTCTTGGTTCTTGGATGAACTTTCGAACTAGTCAAACTTTTACAAGTTCTTTCATAACTTT
64 TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA-TTT
* * *
6474 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTT-GAGCAA-TTTTCTGAGCATTCTATTCTCG
128 AGTTCCATAAAGTATTCAAGACGATCCATT-CTTTCGAGCAATTTTTC-GAGCATTCCATTCTCG
*
6537 AGAAATAGAAGCATTTGGTCTAAAT
191 AGAAATAGAATCATTTGGTCTAAAT
* * * *
6562 AGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTGAATCAAATACTTATTTACATGAAAATTG-TT
1 AGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAATACTTATTTACGTGAGAATTGATT
* *
6626 -TCTCTTGGTTCTTGGACGAATTTCCGAACTTGTCAAACTTTTACGTGTTCTTTTATAATTTTAG
66 CTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA-TTTAG
* * * *
6690 TTCCATAAAGTATTCAAGACGATCCATTCTTTCAAGCAATTTTTCGAGCTTTCCATGCTCGGGAA
130 TTCCATAAAGTATTCAAGACGATCCATTCTTTCGAGCAATTTTTCGAGCATTCCATTCTCGAGAA
* *
6755 ATGGCATCATTTGGTCTAAAT
195 ATAGAATCATTTGGTCTAAAT
* * *
6776 AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTATATATTTATTTACGTGAGAATTGATT
1 AGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAATACTTATTTACGTGAGAATTGATT
* * * *
6841 CTCTTTTGGTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAATTTCAT
66 CTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAATTT-AG
* * *
6906 TTCCATAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTTCGAACATTCCATTCTCGAGAA
130 TTCCATAAAGTATTCAAGACGATCCATTCTTTCGAGCAATTTTTCGAGCATTCCATTCTCGAGAA
* *
6971 ATCGTATCATTTGGTCTAAAT
195 ATAGAATCATTTGGTCTAAAT
* * *
6992 AGTTTGTCATTTTGTAAA-AAGGTTTTGTTGTTTGAATTAAAAACTTATTT
1 AGTTTGTCATTTTGTAAACAA-GTTTTGGTCTTTGAATTAAATACTTATTT
7042 TACATGTGAT
Statistics
Matches: 417, Mismatches: 55, Indels: 16
0.85 0.11 0.03
Matches are distributed among these distances:
213 4 0.01
214 176 0.42
215 14 0.03
216 221 0.53
217 2 0.00
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (215 bp):
AGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAATACTTATTTACGTGAGAATTGATT
CTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAATTTAGT
TCCATAAAGTATTCAAGACGATCCATTCTTTCGAGCAATTTTTCGAGCATTCCATTCTCGAGAAA
TAGAATCATTTGGTCTAAAT
Found at i:9416 original size:213 final size:212
Alignment explanation
Indices: 8752--10656 Score: 1937
Period size: 213 Copynumber: 8.9 Consensus size: 212
8742 ACTTTGTAAT
* * * ** * * *
8752 GTATTCTAGACGACCCATTCCTTCAAAAAATTTTCTGAACATTCTATTTTCAGGAAATAGCAGT-
1 GTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATTCTC-GGGAATAGCA-TC
* *
8816 ATTTGGTCTAAATAGTTTGTCATTTTAG-ACACAAGTTTTGGTCTTTGAATCAAAAACTTATTTA
64 ATTTGGTCTAAATAGTTTGTCATTTT-GTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTA
* * *
8880 CATGAA-AATTATTTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCT
128 CGT-AAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCCGAAC-TGTCAAACTTTTACGAGTTCT
* * * *
8944 TTTATAATTTCAGTTCCATAAA
191 TTTATAACTTCGGTTCCTTACA
* * * * * *
8966 GTATTCAAGACGATCCATTCCTTCAAGCAATTTTC-CAAGCTTTCCATGGT-TAGGAAATCGCAT
1 GTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAA-CATTCCAT--TCTCGGGAATAGCAT
* *
9029 CATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AAGGTTTTGTTGTTTGAATTAAAAACTTATTT
63 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GTTTTGGTCTTTGAATTAAAAACTTATTT
* * * * *
9093 ACGTGAGAAATGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAGCTAGTCAAACTTTTACGAGTT
127 ACGTAAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTCCGAACT-GTCAAACTTTTACGAGTT
*
9158 CTTTCATAACTTCGGTTCCTTA-A
189 CTTTTATAACTTCGGTTCCTTACA
* * * * *
9181 TGTATTCAAGACGATCCATTCCTTCAAGCAATTTTCTAAACATTCTATTCTCGGGAATAGAAGCA
1 -GTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATTCTCGGGAATAGCATCA
* * * *
9246 TTTGATCTAAATAGTTTGTCATTTTGGAAACAAGTTTAGGTCTTTGAATCAAAAACTTATTTACG
65 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
* ** ** *
9311 TAAGAATTGTTTCTCTTGGTTCTTGTATAAACTTTTGAACTAGTTAAACTTTTACGAGTTCTTTT
130 TAAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCCGAACT-GTCAAACTTTTACGAGTTCTTTT
* *
9376 ATAACTTCAGTTCCTTATA
194 ATAACTTCGGTTCCTTACA
* * * * * * * * * ** *
9395 GTATTTAAGATGATACATTCCTTCCAACAACTTTCTAAACATTCTATGCTCGAAAAATGGCATCA
1 GTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATTCTCG-GGAATAGCATCA
* * * *
9460 TTT-TTCTAAATTGTTTGTCATTTTGTAAACAAATTTTGGTCTTTAAATTAAAAACTTATTTACG
65 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * * * * * * * *
9524 TGAA-AATTATTTCTCTCTCTTTGTTCTTAGACAAACTTCCTAACTTTTCCAACTTTTATGAATT
130 T-AAGAA-T-TGT-T-TCTCTTGGTTCTTGGACGAACTTCCGAAC-TGTCAAACTTTTACGAGTT
9588 CTTTTATAACTTCGGTTCCTTA-A
189 CTTTTATAACTTCGGTTCCTTACA
* * * * *
9611 GTTATTCAAGACGATCCATTCGTTTGAGCAATTTT-TGAGCATCCCATTCTCGGGAAATCGCATC
1 G-TATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATTCTCGGG-AATAGCATC
* * * * ***
9675 ATTTAGTCTAAATAGTTTTTTATTTTGTAAACAAGTTTTGGTCTTTTAAACGAAAACTTATTTAC
64 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTAC
* * * * * *
9740 GTGAA-AATTATTTCTCTTGGTTGTAGGACGAACTTCCCAACTTTTCAAACTTTTACAAGTTCTT
129 GT-AAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCCGAAC-TGTCAAACTTTTACGAGTTCTT
*
9804 TTATAACTT-GGTTCTTTACA
192 TTATAACTTCGGTTCCTTACA
* *
9824 GTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATTCTCGGGAAATCGCATCA
1 GTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATTCTCGGG-AATAGCATCA
* * * * *
9889 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTTTTTGAATTATATATTTATTTACG
65 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * *
9954 TGAGAATTGTTTCTCTTTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTT
130 TAAGAATTGTTTCTC--TTGGTTCTTGGACGAACTTCCGAAC-TGTCAAACTTTTACGAGTTCTT
* * *
10019 TTATAACTTCGATTCCTAAAA
192 TTATAACTTCGGTTCCTTACA
* *
10040 GTATTCAAGACGATCCATTCCTTTGAGCAATTTT-TGAACATTCCATTCTCGGGAAGTTGCATCA
1 GTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATTCTCGGGAA-TAGCATCA
* * * **
10104 TTTAGTCTAAATAGTTT-TCATTTTTTAAACAAGTTTTGGTCTTTAAAACAAAAACTTATTTACG
65 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * * * * *
10168 TGAGAATTGTTTCTCTTGGCTGTTGGATGAACTTCTGAACTTTTC-AACTTTTACGAGTTCTTTT
130 TAAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCCGAAC-TGTCAAACTTTTACGAGTTCTTTT
10232 ATAACTT-GGTTCCTTACA
194 ATAACTTCGGTTCCTTACA
* *
10250 GTATTCAAGATGATCCATTCCTTCGAGCAATTTT-TCGAACATTCCATGCTCGGGAAATCA-CAT
1 GTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT-GAACATTCCATTCTCGGG-AAT-AGCAT
* * * *
10313 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGATCTTTGAATTAAATACTTATTTG
63 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTA
*
10378 CG-AGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCT
128 CGTA-AGAATTGTTTCTCTTGGTTCTTGGACGAACTTCCGAAC-TGTCAAACTTTTACGAGTTCT
* * *
10442 TTTATAGCTTTGATTCCTTACA
191 TTTATAACTTCGGTTCCTTACA
* * * * * * *** * **
10464 ATATTCAAGATGATACATTCCTTCGAGCAACTTTCTAAACATTCTACGATAGAAAAATCA-CATC
1 GTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATTCTCG-GGAAT-AGCATC
* * *
10528 ATTT-TTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTAC
64 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTAC
* * * * *
10592 GTGAGAATAGTTTCTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTTCCAAACTTTTATGAGTT
129 GTAAGAAT--TGT-T-TCTCTTGGTTCTTGGACGAACTTCCGAACTGT-CAAACTTTTACGAGTT
10657 TTGATACGAA
Statistics
Matches: 1430, Mismatches: 214, Indels: 91
0.82 0.12 0.05
Matches are distributed among these distances:
210 41 0.03
211 64 0.04
212 144 0.10
213 401 0.28
214 244 0.17
215 176 0.12
216 176 0.12
217 183 0.13
218 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (212 bp):
GTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATTCTCGGGAATAGCATCAT
TTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGT
AAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCCGAACTGTCAAACTTTTACGAGTTCTTTTAT
AACTTCGGTTCCTTACA
Found at i:9662 original size:429 final size:428
Alignment explanation
Indices: 8753--10656 Score: 2038
Period size: 430 Copynumber: 4.4 Consensus size: 428
8743 CTTTGTAATG
* * ** ** * * * *
8753 TATTCTAGACGACCCATTCCTTCAAAAAATTTTCTGAACATTCTATTTTCAGGAAATAGCAGTAT
1 TATTCAAGACGATCCATTCCTTTGAGCAATTTT-TGAACATTCCATTCTC-GGGAATAGCAGCAT
* * * * *
8818 TTGGTCTAAATAGTTTGTCATTTTAGACACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACAT
64 TTAGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTGAAACAAAAACTTATTTACGT
* *
8883 GAAAATTATTTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTA
129 GAAAATTATTTCTCTTGGTTCTTGGACGAACTTCCGAAC-TGTTAAACTTTTACGAGTTCTTTTA
* * * * *
8948 TAATTTCAGTTCCATAAAGTATTCAAGACGATCCATTCCTT-CAAGCAATTTTCCAAGCTTTCCA
193 TAACTT-AGTTCCTTACAGTATTCAAGACGATCCATTCCTTCCAA-CAATTTTCCAAACATTCCA
* * * * *
9012 TGGT-TAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AAGGTTTTGTTGTT
256 TGCTCGA-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-CTTTTGGTCTT
* *
9075 TGAATTAAAAACTTATTTACGTGAGAAA-TG-TT-TCTCTCTTGGTTCTTGGATGAACTTTCGAG
319 TGAATTAAAAACTTATTTACGTGA-AAATTGTTTCTCTCTCTTGGTTCTTGGATGAACTTCCGAA
* * *
9137 CTAGTCAAACTTTTACGAGTTCTTTCATAACTTCGGTTCCTTAA-T
383 CTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAGT
** * * *
9182 GTATTCAAGACGATCCATTCCTTCAAGCAATTTTCTAAACATTCTATTCTCGGGAATAGAAGCAT
1 -TATTCAAGACGATCCATTCCTTTGAGCAATTTT-TGAACATTCCATTCTCGGGAATAGCAGCAT
* *
9247 TT-GATCTAAATAGTTTGTCATTTTGGAAACAAGTTTAGGTCTTTGAATCAAAAACTTATTTACG
64 TTAG-TCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTGAAACAAAAACTTATTTACG
* * ** **
9311 T-AAGAATTGTTTCTCTTGGTTCTTGTATAAACTTTTGAACTAGTTAAACTTTTACGAGTTCTTT
128 TGAA-AATTATTTCTCTTGGTTCTTGGACGAACTTCCGAACT-GTTAAACTTTTACGAGTTCTTT
* * * * * * *
9375 TATAACTTCAGTTCCTTATAGTATTTAAGATGATACATTCCTTCCAACAACTTTCTAAACATTCT
191 TATAACTT-AGTTCCTTACAGTATTCAAGACGATCCATTCCTTCCAACAATTTTCCAAACATTCC
* * * * *
9440 ATGCTCGAAAAATGGCATCATTT-TTCTAAATTGTTTGTCATTTTGTAAACAAATTTTGGTCTTT
255 ATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTT
* * * * ** *
9504 AAATTAAAAACTTATTTACGTGAAAATTATTTCTCTCTCTTTGTTCTTAGACAAACTTCCTAACT
320 GAATTAAAAACTTATTTACGTGAAAATTGTTTCTCTCTCTTGGTTCTTGGATGAACTTCCGAACT
* * *
9569 TTTCCAACTTTTATGAATTCTTTTATAACTTCGGTTCCTTAAGT
385 TGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAGT
* * * * *
9613 TATTCAAGACGATCCATTCGTTTGAGCAATTTTTGAGCATCCCATTCTCGGGAAATCGCATCATT
1 TATTCAAGACGATCCATTCCTTTGAGCAATTTTTGAACATTCCATTCTCGGG-AATAGCAGCATT
* * * * *
9678 TAGTCTAAATAGTTTTTTATTTTGTAAACAAGTTTTGGTCTTTTAAACGAAAACTTATTTACGTG
65 TAGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTGAAACAAAAACTTATTTACGTG
* * * * *
9743 AAAATTATTTCTCTTGGTTGTAGGACGAACTTCCCAACTTTTCAAACTTTTACAAGTTCTTTTAT
130 AAAATTATTTCTCTTGGTTCTTGGACGAACTTCCGAACTGTT-AAACTTTTACGAGTTCTTTTAT
* * * * * *
9808 AACTTGGTTCTTTACAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATTC
194 AACTTAGTTCCTTACAGTATTCAAGACGATCCATTCCTTCCAACAATTTTCCAAACATTCCATGC
* *
9873 TCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTTTTTGAAT
259 TCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * *
9938 TATATATTTATTTACGTGAGAATTGTTTCTCT-T-TTGGTTCTTGGATGAACTTCCGAACTTGTC
324 TAAAAACTTATTTACGTGAAAATTGTTTCTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTC
* *
10001 AAACTTTTATGAGTTCTTTTATAACTTCGATTCCTAAAAG-
389 AAACTTTTATGAGTTCTTTTATAACTTCGGTTCCT-TAAGT
* *
10041 TATTCAAGACGATCCATTCCTTTGAGCAATTTTTGAACATTCCATTCTCGGGAAGTTGCATCATT
1 TATTCAAGACGATCCATTCCTTTGAGCAATTTTTGAACATTCCATTCTCGGGAA-TAGCAGCATT
** *
10106 TAGTCTAAATAGTTT-TCATTTTTTAAACAAGTTTTGGTCTTTAAAACAAAAACTTATTTACGTG
65 TAGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTGAAACAAAAACTTATTTACGTG
* * * * * * * *
10170 AGAATTGTTTCTCTTGGCTGTTGGATGAACTTCTGAACTTTTCAACTTTTACGAGTTCTTTTATA
130 AAAATTATTTCTCTTGGTTCTTGGACGAACTTCCGAACTGTTAAACTTTTACGAGTTCTTTTATA
* * * * * *
10235 ACTTGGTTCCTTACAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCT
195 ACTTAGTTCCTTACAGTATTCAAGACGATCCATTCCTTCCAACAATTTTCCAAACATTCCATGCT
* * *
10300 CGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGATCTTTGAATT
260 CGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * *
10365 AAATACTTATTTGCGAGAGAATTG--T-T-TCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
325 AAAAACTTATTTACGTGAAAATTGTTTCTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCA
* * * * *
10426 AACTTTTACGAGTTCTTTTATAGCTTTGATTCCTTACA-A
390 AACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTA-AGT
* * * * * * *** * ** *
10465 TATTCAAGATGATACATTCCTTCGAGCAACTTTCTAAACATTCTACGATAGAAAAATCA-CATCA
1 TATTCAAGACGATCCATTCCTTTGAGCAA-TTTTTGAACATTCCATTCTCG-GGAAT-AGCAGCA
* * * *
10529 TTT-TTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT-AAATTAAAAACTTATTTAC
63 TTTAGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTGAAA-CAAAAACTTATTTAC
* *
10592 GTGAGAATAGTT-TCTCTCTCTTGGTTCTTGGACGAACTTCCAAACT-TTCCAAACTTTTATGAG
127 GTGA-AA-A-TTAT-T-TCTCTTGGTTCTTGGACGAACTTCCGAACTGTT--AAACTTTTACGAG
10655 TT
185 TT
10657 TTGATACGAA
Statistics
Matches: 1262, Mismatches: 179, Indels: 66
0.84 0.12 0.04
Matches are distributed among these distances:
422 1 0.00
423 3 0.00
424 102 0.08
425 67 0.05
426 167 0.13
427 87 0.07
428 194 0.15
429 300 0.24
430 337 0.27
431 4 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (428 bp):
TATTCAAGACGATCCATTCCTTTGAGCAATTTTTGAACATTCCATTCTCGGGAATAGCAGCATTT
AGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTGAAACAAAAACTTATTTACGTGA
AAATTATTTCTCTTGGTTCTTGGACGAACTTCCGAACTGTTAAACTTTTACGAGTTCTTTTATAA
CTTAGTTCCTTACAGTATTCAAGACGATCCATTCCTTCCAACAATTTTCCAAACATTCCATGCTC
GAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
AAAACTTATTTACGTGAAAATTGTTTCTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAA
ACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAGT
Done.