Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011138.1 Kokia drynarioides strain JFW-HI SEQ_126111, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14548
ACGTcount: A:0.21, C:0.19, G:0.17, T:0.30
Warning! 1907 characters in sequence are not A, C, G, or T
Found at i:7875 original size:29 final size:29
Alignment explanation
Indices: 7824--8040 Score: 119
Period size: 30 Copynumber: 7.4 Consensus size: 29
7814 AGAATGGTAG
** *
7824 TTTTGGAATGTTCGGAATCAAAAATAGGAT
1 TTTTGGAA-GTTCGGGGTTAAAAATAGGAT
7854 TTTTGGAAGTTCGAGGG-T-AAAAT-GGTAAT
1 TTTTGGAAGTTCG-GGGTTAAAAATAGG--AT
* * *
7883 TTTTGGAAGATTCGGGGCTAAATATGGGAT
1 TTTTGGAAG-TTCGGGGTTAAAAATAGGAT
* *
7913 TTTTGGGAA-TTCAGGGG---GAAATAGTAAT
1 TTTT-GGAAGTTC-GGGGTTAAAAATAG-GAT
** *
7941 TTTAAGAAGGTTCGGGGTTAAAAATGGGAT
1 TTTTGGAA-GTTCGGGGTTAAAAATAGGAT
** *
7971 TTTTGGAAGTTTAAGGG-T-AAAATAGTAAT
1 TTTTGGAAG-TTCGGGGTTAAAAATAG-GAT
* *
8000 TTTTGGAAGATTTGGGGTTAAAAATGGGAT
1 TTTTGGAAG-TTCGGGGTTAAAAATAGGAT
8030 TTTTGGAAGTT
1 TTTTGGAAGTT
8041 TAAATTTTGA
Statistics
Matches: 144, Mismatches: 24, Indels: 39
0.70 0.12 0.19
Matches are distributed among these distances:
27 9 0.06
28 20 0.14
29 45 0.31
30 49 0.34
31 19 0.13
32 2 0.01
ACGTcount: A:0.32, C:0.03, G:0.30, T:0.35
Consensus pattern (29 bp):
TTTTGGAAGTTCGGGGTTAAAAATAGGAT
Found at i:8041 original size:59 final size:59
Alignment explanation
Indices: 7843--8043 Score: 262
Period size: 59 Copynumber: 3.4 Consensus size: 59
7833 GTTCGGAATC
* ** * *
7843 AAAAATAGGATTTTTGGAAGTTCGAGGGTAAAATGGTAATTTTTGGAAGATTCGGGGCT
1 AAAAATGGGATTTTTGGAAGTTTAAGGGTAAAATAGTAATTTTTGGAAGATTCGGGGTT
* * ** ** *
7902 AAATATGGGATTTTTGGGAA--TTCAGGGGGAAATAGTAATTTTAAGAAGGTTCGGGGTT
1 AAAAATGGGATTTTT-GGAAGTTTAAGGGTAAAATAGTAATTTTTGGAAGATTCGGGGTT
*
7960 AAAAATGGGATTTTTGGAAGTTTAAGGGTAAAATAGTAATTTTTGGAAGATTTGGGGTT
1 AAAAATGGGATTTTTGGAAGTTTAAGGGTAAAATAGTAATTTTTGGAAGATTCGGGGTT
8019 AAAAATGGGATTTTTGGAAGTTTAA
1 AAAAATGGGATTTTTGGAAGTTTAA
8044 ATTTTGAAAT
Statistics
Matches: 120, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
57 4 0.03
58 43 0.36
59 69 0.57
60 4 0.03
ACGTcount: A:0.33, C:0.02, G:0.30, T:0.34
Consensus pattern (59 bp):
AAAAATGGGATTTTTGGAAGTTTAAGGGTAAAATAGTAATTTTTGGAAGATTCGGGGTT
Found at i:8062 original size:18 final size:18
Alignment explanation
Indices: 8039--8098 Score: 75
Period size: 18 Copynumber: 3.3 Consensus size: 18
8029 TTTTTGGAAG
*
8039 TTTAAATTTTGAAATAAA
1 TTTAAATTTTAAAATAAA
* **
8057 TTTAAATTTTTAAGCAAA
1 TTTAAATTTTAAAATAAA
*
8075 TTTAATTTTTAAAATAAA
1 TTTAAATTTTAAAATAAA
8093 TTTAAA
1 TTTAAA
8099 GGGAGTATGG
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.47
Consensus pattern (18 bp):
TTTAAATTTTAAAATAAA
Found at i:8807 original size:139 final size:139
Alignment explanation
Indices: 8557--9115 Score: 884
Period size: 139 Copynumber: 4.0 Consensus size: 139
8547 CTTCGACTTG
** ** *
8557 CTTCTCAGTGTCTCATCTGGAAGATTTACTCGTTTCGAGCCTCGTTTGGGTCTTCTTCTCAATGT
1 CTTCTCAGTACCTCATCTGGAAGATTCGCTCGTTTCGAGCCTCGTTTGGGTCTTCTTCTCAGTGT
* * *
8622 CTCACCAGGAAGATGATCCCATCACTGTTTCAATCCGCTTCTCTGTATCTCATCAGGAAGGCGAA
66 CTCATCAGGAAGATGATCCCATCATTGTTCCAATCCGCTTCTCTGTATCTCATCAGGAAGGCGAA
*
8687 TTTGATTCA
131 TTTGGTTCA
*
8696 CTTCTCAGTACCTCATCTGGAAGATTCGCTCGTTTCGAGCCTCGTTTGGCTCTTCTTCTCAGTGT
1 CTTCTCAGTACCTCATCTGGAAGATTCGCTCGTTTCGAGCCTCGTTTGGGTCTTCTTCTCAGTGT
* * * *
8761 CTCATCAGAAAGATGATCCCATCATTATTCCAATCCGCTTTTCTGTATCTCATCAGGAAGGCGTA
66 CTCATCAGGAAGATGATCCCATCATTGTTCCAATCCGCTTCTCTGTATCTCATCAGGAAGGCGAA
8826 TTTGGTTCA
131 TTTGGTTCA
* * * *
8835 TTTCTCAATACCCCATCTGGAAGATTCGCTCGTTTCTAGCCTCGTTTGGGTCTTCTTCTCAGTGT
1 CTTCTCAGTACCTCATCTGGAAGATTCGCTCGTTTCGAGCCTCGTTTGGGTCTTCTTCTCAGTGT
* * * *
8900 CTCATCAGGAAGATGATCCCATCATTGTTCCAATCCGCTTTTATGTATCTCATCAGAAAGGCGTA
66 CTCATCAGGAAGATGATCCCATCATTGTTCCAATCCGCTTCTCTGTATCTCATCAGGAAGGCGAA
8965 TTTGGTTCA
131 TTTGGTTCA
* * *
8974 CTTCTCAGTACCTTATCTGGAAGATTTGCTCGTTTCGAGCCTCGTTTGGGTCTTCTTTTCAGTGT
1 CTTCTCAGTACCTCATCTGGAAGATTCGCTCGTTTCGAGCCTCGTTTGGGTCTTCTTCTCAGTGT
*
9039 CTCATCAGGAAGATGATCCCATCATTGTTTCAATCCGCTTCTCTGTATCTCATCAGGAAGGCGAA
66 CTCATCAGGAAGATGATCCCATCATTGTTCCAATCCGCTTCTCTGTATCTCATCAGGAAGGCGAA
9104 TTTGGTTCA
131 TTTGGTTCA
9113 CTT
1 CTT
9116 NNNNNNNNNN
Statistics
Matches: 385, Mismatches: 35, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
139 385 1.00
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.36
Consensus pattern (139 bp):
CTTCTCAGTACCTCATCTGGAAGATTCGCTCGTTTCGAGCCTCGTTTGGGTCTTCTTCTCAGTGT
CTCATCAGGAAGATGATCCCATCATTGTTCCAATCCGCTTCTCTGTATCTCATCAGGAAGGCGAA
TTTGGTTCA
Found at i:10089 original size:411 final size:411
Alignment explanation
Indices: 9313--10525 Score: 1698
Period size: 411 Copynumber: 3.0 Consensus size: 411
9303 TGTTCCAATC
* * *
9313 CGCTTTTCTGTATCTCATCAGGAAGGCGTATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTA
1 CGCTTCTCTGCATCTCATCAGGAAGGCGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTA
* * * * * *
9378 ACCTTTTATTGCTTCGATCTGCTTCTCGGTGTGTCATTAGGAAGCTGGGATTTGAAGATTTTGCT
66 ACCATTTATTGCTTCCACCTGCTTCTCGGTGTCTCATCAGGAAGCTGGGTTTTGAAGATTTTGCT
** * * * * *
9443 CA-TGTCGAGCATGAGTTTGGTTTGGTTTTCTTCTCAGTATCTCATCAGGAAGATGACCTCGCCG
131 CACT-TTAAGCCT-CGTTTGG---GGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCGTCG
* * * * * * * * *
9507 TTTGTTTGAATCCGCTTCTTTGTATCTCATCAGGAAAATGAATTTGGTCTACTTCTCCGTATCTC
191 TTTGCTAGAATTCGCTTCTCTGTATCTCATCAGGAAAACGAATCTGGTCCACTTCTCTGTACCTC
* * * * * * * * * * * *
9572 ATCAGG-A-A-GCT-A--ACCGTTTATTGCTTCGA-TCTGCTTCTCGGTGTGTCATCCGGAAGCT
256 ATCAGGAAGATGGTCAGGA-AGCTAACT-ATTTGACT-TGCTTCTCAGCGTCTCATCAGGAAGCA
* * * *
9630 G-GGATCCGAAGACTTGCTCACATCGAGCATGGGTTTGGTTTAGTCTTTTTCTCAGTATCTCATC
318 GTGG-TTCGAAGATTTGCTCACATCGAGCGTGGGTTTGGTTTGGTCTTTTTCTCAGTATCTCATC
9694 AGGAAGATGACCGCGCCATTTGTTTCAACT
382 AGGAAGATGACCGCGCCATTTGTTTCAACT
* *
9724 CGCTTCTTTGCATCTCATTAGGAAGGCGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTA
1 CGCTTCTCTGCATCTCATCAGGAAGGCGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTA
* *
9789 ACCATTTATTGCTTCCACCTGCTTCTCGGTGTCTCATCAGGAATCTGGGTTTTGAAGATTTCGCT
66 ACCATTTATTGCTTCCACCTGCTTCTCGGTGTCTCATCAGGAAGCTGGGTTTTGAAGATTTTGCT
* *
9854 CACTTTAAGCCTCGTTTGGGGTCTTCTTCTCAGTATATCATCAGGAAGATGACCGCGTCGTCTGC
131 CACTTTAAGCCTCGTTTGGGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCGTCGTTTGC
* * *
9919 TACAATTTGCTTCTCTGTATCTCATCAGGAAAACGAATCTGGTCCACTTCTCTGTACCTCATCGG
196 TAGAATTCGCTTCTCTGTATCTCATCAGGAAAACGAATCTGGTCCACTTCTCTGTACCTCATCAG
9984 GAAGATGGTCAGGAAGCTAACTATTTGACTTGCTTCTCAGCGTCTCATCAGGAAGCAGTGGTTCG
261 GAAGATGGTCAGGAAGCTAACTATTTGACTTGCTTCTCAGCGTCTCATCAGGAAGCAGTGGTTCG
*
10049 AAGATTTGGTCACATCGAGCGTGGGTTTGGTTTGGTCTTTTTCTCAGTATCTCATCAGGAAGATG
326 AAGATTTGCTCACATCGAGCGTGGGTTTGGTTTGGTCTTTTTCTCAGTATCTCATCAGGAAGATG
*
10114 ACCGCGCCGTTTGTTTCAACT
391 ACCGCGCCATTTGTTTCAACT
* * *
10135 CGCTTCTCTGCATCTCATCAAGAAGGTGAATTTGGTTCACTTCTCAGTATCTCATTAGGAAGCTA
1 CGCTTCTCTGCATCTCATCAGGAAGGCGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTA
10200 ACCATTTATTGCTTCCACCTGCTTCTCGGTGTCTCATCAGGAAGCTGGGTTTTGAAGATTTTGCT
66 ACCATTTATTGCTTCCACCTGCTTCTCGGTGTCTCATCAGGAAGCTGGGTTTTGAAGATTTTGCT
10265 CACTTTAAGCCTCGTTTGGGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCGTCGTTTGC
131 CACTTTAAGCCTCGTTTGGGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCGTCGTTTGC
* *
10330 TAGAATTCGCTTCTCTGTATCTAATCAGGAAAACGAATCTGGTTCACTTCTCTGTACCTCATCAG
196 TAGAATTCGCTTCTCTGTATCTCATCAGGAAAACGAATCTGGTCCACTTCTCTGTACCTCATCAG
*
10395 GAAGATGGTCAGGAAGCTAACTATTTGACTTGCTTCTCAGCATCTCATCAGGAAGCAGTGGTTCG
261 GAAGATGGTCAGGAAGCTAACTATTTGACTTGCTTCTCAGCGTCTCATCAGGAAGCAGTGGTTCG
** *
10460 AAGATTTGCTCACATCGAGCGT--G---ACTTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATG
326 AAGATTTGCTCACATCGAGCGTGGGTTTGGTTTGGTCTTTTTCTCAGTATCTCATCAGGAAGATG
10520 ACCGCG
391 ACCGCG
10526 TCGTCTTGTT
Statistics
Matches: 722, Mismatches: 71, Indels: 23
0.88 0.09 0.03
Matches are distributed among these distances:
406 40 0.06
407 95 0.13
408 1 0.00
409 2 0.00
410 8 0.01
411 567 0.79
412 8 0.01
413 1 0.00
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.34
Consensus pattern (411 bp):
CGCTTCTCTGCATCTCATCAGGAAGGCGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTA
ACCATTTATTGCTTCCACCTGCTTCTCGGTGTCTCATCAGGAAGCTGGGTTTTGAAGATTTTGCT
CACTTTAAGCCTCGTTTGGGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCGTCGTTTGC
TAGAATTCGCTTCTCTGTATCTCATCAGGAAAACGAATCTGGTCCACTTCTCTGTACCTCATCAG
GAAGATGGTCAGGAAGCTAACTATTTGACTTGCTTCTCAGCGTCTCATCAGGAAGCAGTGGTTCG
AAGATTTGCTCACATCGAGCGTGGGTTTGGTTTGGTCTTTTTCTCAGTATCTCATCAGGAAGATG
ACCGCGCCATTTGTTTCAACT
Found at i:10118 original size:209 final size:207
Alignment explanation
Indices: 9873--10531 Score: 782
Period size: 202 Copynumber: 3.2 Consensus size: 207
9863 CCTCGTTTGG
* *
9873 GGTCTTCTTCTCAGTATATCATCAGGAAGATGACCGCGTCGTCTGCTACAATTTGCTTCTCTGTA
1 GGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCGTCGTCTGCTACAATTCGCTTCTCTGTA
* *
9938 TCTCATCAGGAAAACGAATCTGGTCCACTTCTCTGTACCTCATCGGGAAGATGGTCAGGAAGCTA
66 TCTCATCAGGAAAACGAATCTGGTTCACTTCTCTGTACCTCATCAGGAAGATGGTCAGGAAGCTA
*
10003 ACTATTTGACTTGCTTCTCAGCGTCTCATCAGGAAGCAGTGGTTCGAAGATTTGGTCACATCGAG
131 ACTATTTGACTTGCTTCTCAGCGTCTCATCAGGAAGCAGTGGTTCGAAGATTTGCTCACATCGAG
10068 CGTGGGTTTGGTTT
196 CGT--GTTTGGTTT
* * * * * * *
10082 GGTCTTTTTCTCAGTATCTCATCAGGAAGATGACCGCGCCGTTTGTTTCAACTCGCTTCTCTGCA
1 GGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCGTCGTCTGCTACAATTCGCTTCTCTGTA
* *** * * * * * *** *** *
10147 TCTCATCAAGAAGGTGAATTTGGTTCACTTCTCAGTATCTCATTAGGAAGCTAACCATTTA--TT
66 TCTCATCAGGAAAACGAATCTGGTTCACTTCTCTGTACCTCATCAGGAAGATGGTCAGGAAGCTA
* ** * * * * * * **
10210 GC--TTCCACCTGCTTCTCGGTGTCTCATCAGGAAGCTG-GGTTTTGAAGATTTTGCTCACTTTA
131 ACTATTTGACTTGCTTCTCAGCGTCTCATCAGGAAGCAGTGG-TTCGAAGA-TTTGCTCACATCG
*
10272 AGCCTCGTTTGG---
194 AGCGT-GTTTGGTTT
* *
10284 GGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCGTCGTTTGCTAGAATTCGCTTCTCTGTA
1 GGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCGTCGTCTGCTACAATTCGCTTCTCTGTA
*
10349 TCTAATCAGGAAAACGAATCTGGTTCACTTCTCTGTACCTCATCAGGAAGATGGTCAGGAAGCTA
66 TCTCATCAGGAAAACGAATCTGGTTCACTTCTCTGTACCTCATCAGGAAGATGGTCAGGAAGCTA
*
10414 ACTATTTGACTTGCTTCTCAGCATCTCATCAGGAAGCAGTGGTTCGAAGATTTGCTCACATCGAG
131 ACTATTTGACTTGCTTCTCAGCGTCTCATCAGGAAGCAGTGGTTCGAAGATTTGCTCACATCGAG
**
10479 CGTG---ACTTT
196 CGTGTTTGGTTT
10488 GGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCGTCGTCT
1 GGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCGTCGTCT
10532 TGTTGGATAA
Statistics
Matches: 359, Mismatches: 81, Indels: 25
0.77 0.17 0.05
Matches are distributed among these distances:
202 103 0.29
204 48 0.13
205 56 0.16
206 48 0.13
207 4 0.01
209 100 0.28
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.33
Consensus pattern (207 bp):
GGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCGTCGTCTGCTACAATTCGCTTCTCTGTA
TCTCATCAGGAAAACGAATCTGGTTCACTTCTCTGTACCTCATCAGGAAGATGGTCAGGAAGCTA
ACTATTTGACTTGCTTCTCAGCGTCTCATCAGGAAGCAGTGGTTCGAAGATTTGCTCACATCGAG
CGTGTTTGGTTT
Found at i:10342 original size:202 final size:204
Alignment explanation
Indices: 9246--10398 Score: 1182
Period size: 205 Copynumber: 5.7 Consensus size: 204
9236 ATTCGCTCGT
* * * * **
9246 TTCGAGCCT-CATTT-G-GGTCTTCTTCTCAGTGTCTCATCAAGAATATGATCC-CATCG-TTGT
1 TTCGAGCCTGCGTTTGGTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGA-CCGCGCCGTTTGT
* * * ** *
9306 TCCAATCCGCTTTTCTGTATCTCATCAGGAAGGCGTATTTGGTTCACTTCTCAGTATCTCATCAG
65 TTCAATTCGCTTCTCTGTATCTCATCAGGAAAACGAATTTGGTTCACTTCTCAGTATCTCATCAG
* * * *
9371 GAAGCTAACCTTTTATTGCTTCGATCTGCTTCTCGGTGTGTCATTAGGAAGCTGGGATTTGAAGA
130 GAAGCTAACCATTTATTGCTTCGACCTGCTTCTCGGTGTCTCATCAGGAAGCTGGGATTTGAAGA
9436 TTTTGCTCA-
195 TTTTGCTCAC
* * * *
9445 TGTCGAGCATGAGTTTGGTTTGGTTTTCTTCTCAGTATCTCATCAGGAAGATGACCTCGCCGTTT
1 T-TCGAGCCTGCGTTTGG--TGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCGCCGTTT
* * * * *
9510 GTTTGAATCCGCTTCTTTGTATCTCATCAGGAAAATGAATTTGG-TCTACTTCTCCGTATCTCAT
63 GTTTCAATTCGCTTCTCTGTATCTCATCAGGAAAACGAATTTGGTTC-ACTTCTCAGTATCTCAT
* * * * **
9574 CAGGAAGCTAACCGTTTATTGCTTCGATCTGCTTCTCGGTGTGTCATCCGGAAGCTGGGATCCGA
127 CAGGAAGCTAACCATTTATTGCTTCGACCTGCTTCTCGGTGTCTCATCAGGAAGCTGGGATTTGA
*
9639 AGA-CTTGCTCAC
192 AGATTTTGCTCAC
* * * * * *
9651 ATCGAGCATGGGTTTGGTTTAGTCTTTTTCTCAGTATCTCATCAGGAAGATGACCGCGCCATTTG
1 TTCGAGCCTGCGTTTGG--TGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCGCCGTTTG
* * * * **
9716 TTTCAACTCGCTTCTTTGCATCTCATTAGGAAGGCGAATTTGGTTCACTTCTCAGTATCTCATCA
64 TTTCAATTCGCTTCTCTGTATCTCATCAGGAAAACGAATTTGGTTCACTTCTCAGTATCTCATCA
* * *
9781 GGAAGCTAACCATTTATTGCTTCCACCTGCTTCTCGGTGTCTCATCAGGAATCTGGGTTTTGAAG
129 GGAAGCTAACCATTTATTGCTTCGACCTGCTTCTCGGTGTCTCATCAGGAAGCTGGGATTTGAAG
*
9846 ATTTCGCTCAC
194 ATTTTGCTCAC
** * * * *
9857 TTTAAGCCT-CGTTTGG-GGTCTTCTTCTCAGTATATCATCAGGAAGATGACCGCGTCGTCTGCT
1 TTCGAGCCTGCGTTTGGTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCGCCGTTTGTT
* * * * * * *
9920 ACAATTTGCTTCTCTGTATCTCATCAGGAAAACGAATCTGGTCCACTTCTCTGTACCTCATCGGG
66 TCAATTCGCTTCTCTGTATCTCATCAGGAAAACGAATTTGGTTCACTTCTCAGTATCTCATCAGG
* *** *** ** * * * * * *
9985 AAGATGGTCAGGAAGCTAACTATTTGACTTGCTTCTCAGCGTCTCATCAGGAAGCAGTGG-TTCG
131 AAGCTAACCATTTA--TTGC--TTCGACCTGCTTCTCGGTGTCTCATCAGGAAGCTG-GGATTTG
*
10049 AAGA-TTTGGTCAC
191 AAGATTTTGCTCAC
* * * *
10062 ATCGAGCGTGGGTTTGGTTTGGTCTTTTTCTCAGTATCTCATCAGGAAGATGACCGCGCCGTTTG
1 TTCGAGCCTGCGTTTGG--TGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCGCCGTTTG
* * * *** *
10127 TTTCAACTCGCTTCTCTGCATCTCATCAAGAAGGTGAATTTGGTTCACTTCTCAGTATCTCATTA
64 TTTCAATTCGCTTCTCTGTATCTCATCAGGAAAACGAATTTGGTTCACTTCTCAGTATCTCATCA
* *
10192 GGAAGCTAACCATTTATTGCTTCCACCTGCTTCTCGGTGTCTCATCAGGAAGCTGGGTTTTGAAG
129 GGAAGCTAACCATTTATTGCTTCGACCTGCTTCTCGGTGTCTCATCAGGAAGCTGGGATTTGAAG
10257 ATTTTGCTCAC
194 ATTTTGCTCAC
** * *
10268 TTTAAGCCT-CGTTTGG-GGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCGTCGTTTGCT
1 TTCGAGCCTGCGTTTGGTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCGCCGTTTGTT
** * * * *
10331 AGAATTCGCTTCTCTGTATCTAATCAGGAAAACGAATCTGGTTCACTTCTCTGTACCTCATCAGG
66 TCAATTCGCTTCTCTGTATCTCATCAGGAAAACGAATTTGGTTCACTTCTCAGTATCTCATCAGG
10396 AAG
131 AAG
10399 ATGGTCAGGA
Statistics
Matches: 774, Mismatches: 157, Indels: 43
0.79 0.16 0.04
Matches are distributed among these distances:
199 1 0.00
200 7 0.01
201 3 0.00
202 199 0.26
204 6 0.01
205 269 0.35
206 185 0.24
207 4 0.01
209 100 0.13
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.35
Consensus pattern (204 bp):
TTCGAGCCTGCGTTTGGTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCGCCGTTTGTT
TCAATTCGCTTCTCTGTATCTCATCAGGAAAACGAATTTGGTTCACTTCTCAGTATCTCATCAGG
AAGCTAACCATTTATTGCTTCGACCTGCTTCTCGGTGTCTCATCAGGAAGCTGGGATTTGAAGAT
TTTGCTCAC
Done.