genome.fa.s11144.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011144.1 Kokia drynarioides strain JFW-HI SEQ_126117, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  197758

Tables:   1   

This is table  1  of  1  ( 105 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3842--3877	18	2.0	18	89	10	56	72	5	13	8	1.27
5484--5536	23	2.2	24	90	9	83	73	5	15	5	1.21
17734--17777	18	2.4	18	76	0	52	25	29	11	34	1.91
17734--17785	18	2.9	17	77	5	50	26	30	11	30	1.92
23635--23678	17	2.5	17	89	10	63	0	15	4	79	0.89
24163--24218	17	3.4	16	80	11	60	58	12	12	16	1.62
24134--24217	34	2.5	33	79	9	89	57	15	11	15	1.66
38562--38610	25	2.0	25	100	0	98	40	8	16	34	1.78
40807--40951	23	6.3	23	88	1	200	35	4	11	47	1.61
40807--40951	70	2.1	69	89	1	218	35	4	11	47	1.61
41020--41097	36	2.2	36	92	0	129	25	12	26	34	1.92
45112--45146	16	2.1	17	89	10	54	34	0	14	51	1.42
45662--45738	23	3.3	23	90	0	127	33	6	15	44	1.72
45818--45919	34	2.9	36	88	4	154	31	12	18	37	1.89
50367--50392	10	2.6	10	100	0	52	42	19	30	7	1.79
51995--52050	27	2.1	27	100	0	112	28	21	3	46	1.68
52238--52272	15	2.4	15	95	4	63	25	20	5	48	1.71
55842--55936	39	2.4	39	96	0	154	26	20	17	35	1.95
55879--55954	20	3.8	20	72	10	75	27	19	15	36	1.93
55879--55993	59	1.9	59	89	0	176	27	20	15	36	1.93
55936--56059	39	3.2	39	92	0	194	27	16	15	40	1.89
55842--56034	98	2.0	98	86	0	269	27	18	16	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58848--59001	75	2.1	75	87	0	218	28	27	13	30	1.94
58951--59059	45	2.4	44	83	3	137	25	28	13	32	1.94
64390--64429	17	2.3	17	87	12	55	72	5	0	22	1.04
66169--66322	50	3.2	49	63	25	119	39	6	7	46	1.57
66169--66362	95	2.0	95	95	2	345	39	5	8	46	1.57
66339--66369	2	15.5	2	93	0	53	48	0	3	48	1.17
66824--66867	14	3.1	14	84	12	63	40	0	18	40	1.50
67645--67693	24	2.0	24	88	0	71	55	2	4	38	1.31
68009--68054	24	1.9	24	82	8	58	43	0	4	52	1.21
68606--68674	35	2.0	36	85	5	97	23	1	2	72	1.06
68626--68674	6	8.2	6	79	6	55	18	2	2	77	0.96
77544--77576	3	11.0	3	100	0	66	66	0	0	33	0.92
78946--79009	26	2.5	26	82	10	85	28	1	3	67	1.15
80253--80295	21	2.0	21	86	8	61	55	0	2	41	1.12
81491--81567	6	13.0	6	77	13	79	44	2	1	51	1.23
81491--81567	18	4.3	18	90	4	104	44	2	1	51	1.23
81588--81664	35	2.2	35	88	0	109	44	25	12	16	1.84
83421--83790	29	12.7	29	79	7	347	35	29	2	31	1.73
83421--83790	58	6.3	57	82	7	388	35	29	2	31	1.73
83808--83867	28	2.1	29	84	3	77	35	23	10	31	1.88
85378--85437	28	2.1	28	84	3	75	31	10	23	35	1.88
85456--85824	59	6.3	55	79	10	201	31	2	29	35	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85455--85824	29	12.7	29	79	7	347	31	2	29	35	1.73
87581--87657	35	2.2	35	88	0	109	16	12	25	44	1.84
87679--87754	12	6.4	12	80	8	75	52	1	2	43	1.23
87678--87754	18	4.3	18	90	4	104	51	1	2	44	1.23
88148--88181	18	1.9	18	88	5	52	29	0	5	64	1.17
88950--88992	21	2.0	21	86	8	61	41	2	0	55	1.12
90236--90299	26	2.5	27	85	10	89	67	3	1	28	1.15
90398--90436	16	2.4	16	86	0	51	76	2	0	20	0.90
91424--91467	23	2.0	21	82	8	52	45	2	2	50	1.27
91669--91701	3	11.0	3	100	0	66	33	0	0	66	0.92
93056--93176	28	4.2	28	70	11	82	28	7	29	33	1.85
93067--93179	29	3.9	28	69	16	79	30	6	30	31	1.82
93219--93424	30	7.0	29	79	8	177	35	3	27	33	1.74
93219--93423	59	3.4	58	80	7	153	35	3	27	33	1.74
95242--95353	17	6.4	18	81	5	79	51	1	1	44	1.22
95244--95353	52	2.1	52	81	0	121	51	1	1	44	1.22
96175--96233	31	1.9	31	86	6	84	22	6	8	62	1.47
96328--96382	25	2.2	25	90	6	85	32	1	7	58	1.36
98517--98575	21	2.8	21	77	10	59	28	10	18	42	1.83
104995--105024	2	15.0	2	100	0	60	50	0	0	50	1.00
109740--109865	64	2.0	64	85	6	175	31	18	15	34	1.92
110943--110973	16	2.0	16	93	6	55	32	25	0	41	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112327--112384	28	2.1	27	81	15	66	17	1	6	74	1.12
112518--112551	14	2.5	14	90	4	52	23	5	0	70	1.09
112556--112603	25	1.9	25	86	0	69	22	0	8	68	1.16
112556--112599	13	3.5	13	81	3	54	22	0	9	68	1.18
116891--116924	2	17.0	2	100	0	68	50	0	0	50	1.00
116926--116983	17	3.4	17	80	0	62	48	12	17	22	1.80
132178--132209	15	2.1	16	94	5	57	15	25	15	43	1.86
138112--138239	52	2.5	52	94	1	222	35	13	12	39	1.82
149585--149654	27	2.6	27	86	4	88	28	17	20	34	1.95
149671--149764	28	3.4	27	68	16	68	24	15	28	30	1.96
149798--149924	54	2.4	54	86	0	164	33	13	23	29	1.93
149844--149980	27	5.0	27	71	11	91	35	12	23	29	1.91
149820--149925	54	2.0	54	90	0	167	32	12	23	32	1.92
151241--151357	40	2.9	40	83	2	137	23	22	25	29	1.99
154241--154388	18	8.1	18	71	20	94	64	2	2	30	1.18
154237--154345	36	3.0	37	80	15	120	69	1	2	25	1.11
154285--154376	28	3.3	28	71	27	79	63	3	1	32	1.18
154417--154487	21	3.4	21	75	11	56	60	2	1	35	1.20
155618--155662	17	2.6	17	78	3	54	71	0	4	24	1.05
155616--155662	19	2.7	18	77	16	53	72	0	4	23	1.02
155652--155704	27	2.0	27	85	7	72	62	0	0	37	0.96
155617--155723	46	2.3	46	74	6	108	66	0	2	30	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
155922--155959	20	2.0	20	89	5	60	28	5	2	63	1.30
155925--156052	10	12.9	10	68	18	54	28	5	3	62	1.33
156160--156189	4	7.8	4	92	7	53	76	0	0	23	0.78
168125--168184	25	2.4	25	97	0	111	25	1	6	66	1.25
171162--171204	17	2.5	17	84	3	50	20	25	2	51	1.60
174682--174708	14	1.9	14	100	0	54	66	7	22	3	1.33
175750--175781	9	3.7	9	95	4	57	50	0	0	50	1.00
176848--176881	3	11.3	3	93	0	59	35	2	0	61	1.11
193084--193121	16	2.4	16	100	0	76	13	13	42	31	1.82
193222--193322	20	5.6	19	66	33	71	49	0	0	50	1.00
193254--193322	11	6.9	10	77	22	58	50	0	0	49	1.00
193223--193322	40	2.5	40	95	4	177	50	0	0	50	1.00
193362--193396	6	5.8	6	100	0	70	0	65	0	34	0.93
194138--194200	33	2.0	31	87	9	92	41	1	34	22	1.63
195928--196205	43	6.5	43	81	4	258	29	26	15	28	1.96
195927--196136	86	2.4	85	87	4	287	30	26	16	26	1.96
195928--196205	129	2.2	129	82	2	326	29	26	15	28	1.96

Tables:   1

The End!