Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011157.1 Kokia drynarioides strain JFW-HI SEQ_126131, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3293
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30


Found at i:1854 original size:24 final size:24

Alignment explanation


    Indices: 1822--1872  Score: 93
    Period size: 24  Copynumber: 2.1  Consensus size: 24

       1812 TTTCATCATC

                       *            
       1822 AATATTAACGCTAGGTATGTGGGA
          1 AATATTAACGCGAGGTATGTGGGA

                                    
       1846 AATATTAACGCGAGGTATGTGGGA
          1 AATATTAACGCGAGGTATGTGGGA

               
       1870 AAT
          1 AAT

       1873 CTTACACCAC


Statistics
Matches: 26,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   26  1.00

ACGTcount: A:0.35, C:0.08, G:0.29, T:0.27


Consensus pattern (24 bp):   
AATATTAACGCGAGGTATGTGGGA
Done.