Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011162.1 Kokia drynarioides strain JFW-HI SEQ_126136, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 624

Length: 1040
ACGTcount: A:0.46, C:0.11, G:0.12, T:0.30


Found at i:739 original size:12 final size:12

Alignment explanation


    Indices: 724--749  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        714 ATACACTTAA

                        
        724 AAATATTAAAAC
          1 AAATATTAAAAC

                        
        736 AAATATTAAAAC
          1 AAATATTAAAAC

              
        748 AA
          1 AA

        750 CAAACAAATT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.69, C:0.08, G:0.00, T:0.23


Consensus pattern (12 bp):   
AAATATTAAAAC

Found at i:787 original size:41 final size:40

Alignment explanation


    Indices: 722--805  Score: 114
    Period size: 41  Copynumber: 2.1  Consensus size: 40

        712 AAATACACTT

                               *        *           
        722 AAAAATATTAAAACAAATATTAAAACAACAAACAAATTAA
          1 AAAAATATTAAAACAAATAGTAAAACAAAAAACAAATTAA

                          *    *                   * 
        762 AAAAGATATTAAAATAAATCGTAAAACAAAAAACAAATTGA
          1 AAAA-ATATTAAAACAAATAGTAAAACAAAAAACAAATTAA

               
        803 AAA
          1 AAA

        806 TACAATAAGC


Statistics
Matches: 38,  Mismatches: 5, Indels: 1
        0.86            0.11        0.02

Matches are distributed among these distances:
  40    4  0.11
  41   34  0.89

ACGTcount: A:0.69, C:0.08, G:0.04, T:0.19


Consensus pattern (40 bp):   
AAAAATATTAAAACAAATAGTAAAACAAAAAACAAATTAA
Done.