Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011166.1 Kokia drynarioides strain JFW-HI SEQ_126141, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2898
ACGTcount: A:0.35, C:0.11, G:0.19, T:0.35


Found at i:244 original size:14 final size:14

Alignment explanation


    Indices: 225--273  Score: 62
    Period size: 14  Copynumber: 3.5  Consensus size: 14

        215 CGAACCTGAC

                   *      
        225 CGTTGACTGTTGAT
          1 CGTTGACCGTTGAT

                    *     
        239 CGTTGACCATTGAT
          1 CGTTGACCGTTGAT

            **            
        253 AATTGACCGTTGAT
          1 CGTTGACCGTTGAT

                   
        267 CGTTGAC
          1 CGTTGAC

        274 TTTTTAGGTT


Statistics
Matches: 28,  Mismatches: 7, Indels: 0
        0.80            0.20        0.00

Matches are distributed among these distances:
  14   28  1.00

ACGTcount: A:0.20, C:0.18, G:0.24, T:0.37


Consensus pattern (14 bp):   
CGTTGACCGTTGAT

Found at i:2641 original size:3 final size:3

Alignment explanation


    Indices: 2633--2660  Score: 56
    Period size: 3  Copynumber: 9.3  Consensus size: 3

       2623 TGGAAAAAAT

                                                 
       2633 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
          1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A

       2661 AACTTGTGGT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   25  1.00

ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32


Consensus pattern (3 bp):   
ATA

Done.