Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011167.1 Kokia drynarioides strain JFW-HI SEQ_126142, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2589
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.32

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:2225 original size:43 final size:43

Alignment explanation


    Indices: 2177--2267  Score: 182
    Period size: 43  Copynumber: 2.1  Consensus size: 43

       2167 TTTATTAACC

                                                       
       2177 CAAAATAAAAAAACAACTGACCATAAGGTCAATCATACAAAGA
          1 CAAAATAAAAAAACAACTGACCATAAGGTCAATCATACAAAGA

                                                       
       2220 CAAAATAAAAAAACAACTGACCATAAGGTCAATCATACAAAGA
          1 CAAAATAAAAAAACAACTGACCATAAGGTCAATCATACAAAGA

                 
       2263 CAAAA
          1 CAAAA

       2268 CAAGATACGA


Statistics
Matches: 48,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  43   48  1.00

ACGTcount: A:0.59, C:0.19, G:0.09, T:0.13


Consensus pattern (43 bp):   
CAAAATAAAAAAACAACTGACCATAAGGTCAATCATACAAAGA
Done.