Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011174.1 Kokia drynarioides strain JFW-HI SEQ_126150, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4709
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.39


Found at i:1883 original size:23 final size:23

Alignment explanation


    Indices: 1857--1902  Score: 92
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       1847 ATAAGATAAG

                                   
       1857 CACTATTATCATAAAGAATGTTT
          1 CACTATTATCATAAAGAATGTTT

                                   
       1880 CACTATTATCATAAAGAATGTTT
          1 CACTATTATCATAAAGAATGTTT

       1903 AACTCTCCTT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.39, C:0.13, G:0.09, T:0.39


Consensus pattern (23 bp):   
CACTATTATCATAAAGAATGTTT

Found at i:2553 original size:2 final size:2

Alignment explanation


    Indices: 2546--2589  Score: 74
    Period size: 2  Copynumber: 23.0  Consensus size: 2

       2536 ATTAAATTTA

                                                                          
       2546 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T A- AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

                 
       2586 AT AT
          1 AT AT

       2590 TGGTGTGATT


Statistics
Matches: 40,  Mismatches: 0, Indels: 4
        0.91            0.00        0.09

Matches are distributed among these distances:
   1    2  0.05
   2   38  0.95

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.