Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011176.1 Kokia drynarioides strain JFW-HI SEQ_126152, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4749
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Found at i:1248 original size:216 final size:215
Alignment explanation
Indices: 32--4708 Score: 4683
Period size: 216 Copynumber: 21.7 Consensus size: 215
22 CCTAGTTCGA
* * * * *
32 AAGTTCGTCCAAGAACCAAGAGAGAAACAATT-TACACATAAATAAGTATTTAAATCAATGACCG
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT-CACGTAAATAAGTTTTTAATTCAAAGACCA
* ** * * * * *
96 AAAGTTTTTTTACAAAATGGTAGACTATTTAGATCGAATGACGCGATTTCCCGAGCATGGAATGT
65 AAAG-TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGT
* * * * * *
161 TCGAAATATTGCTCGGAGGATTGGGTCATCTTGAATACTTTAAGGAACCGGAGTTA-TTATAAAA
129 TCGAAAAATTGCTCGAAGGAATGGATC-GCTTGAATACTTTAAGGAA-C--A-TAAGTTATAAAA
* * *
225 GAAATAGTAAAAGCTTGACAAGTTCAG
189 GAACTCGTAAAAGTTTGACAAGTTCAG
* * * * * * *
252 AAGTTTGTCTAAGAAACAAAAGAGAAATAATTCTCACATAAATATA-TTTTTAATTCAAAGTCCA
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA-AGTTTTTAATTCAAAGACC-
* ** * * * * *
316 AAAAGTTGTTTTCAAAATGACAAACTATTTAGACCGCATAATGCTATTACCCGAGCATGGAGTGT
64 AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGT
* * *
381 TCGGAATATTGATCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCA-AAGTTATAAAAGAA
129 TCGAAAAATTGCTCGAAGGAATGGATCG-CTTGAATACTTTAAGGAA-CATAAGTTATAAAAGAA
* *
445 CTCGTAAAAGCTTGACTAGTTCAG
192 CTCGTAAAAGTTTGACAAGTTCAG
* **
469 AAGTTCGTCTAAGAACCAA-AGGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTGAAGACCA
1 AAGTTCGTCCAAGAACCAAGA-GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * * * *
533 AAACTTGGTTTTCCAAAATGACAAACTATTTAGACCAAAAGATGCAATTGCTCGTGCATGGAATG
65 AAAGTT-G-TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATG
* * * * * * * *
598 TTTGGAAAATAGCTCGTAA-AAATGGATGGTCTAGAATACTTTAAGGAACAAAAGTTATAAAATA
128 TTCGAAAAATTGCTCG-AAGGAATGGATCG-CTTGAATACTTTAAGGAACATAAGTTATAAAAGA
* *
662 ACTCGTAAAAGTTTTACAAGTTCGG
191 ACTCGTAAAAGTTTGACAAGTTCAG
* * * *
687 TAGTTCGTCCAAGAACCGAGAGAGAAACAATTTTCACATAAATAAGTTTTTAATTCAAAGACCAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * * * * **
752 AAGTTGTTTACAAAATGACAAACTATTTAAACCAAAAGATTCAATTTCTGGATAATGGAATGTTC
66 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTC
* ** * * * * *
817 G-AAAATTGCTCG-ATGAAGTGGATCATTTATAATACACTTCAAGAAACAAAAGTTTTAAAAGAA
131 GAAAAATTGCTCGAAGGAA-TGGATCGCTT-GAAT--ACTTTAAGGAACATAAGTTATAAAAGAA
*
880 CTTGTAAAAGTTTGACAAGTTCA-
192 CTCGTAAAAGTTTGACAAGTTCAG
* * * *
903 AAGGTTCGTCCAAGAGCCAAGAGAGAAACAAATCCCACGTCAATAAGTTTTTAATTCAAAGACCA
1 AA-GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * *
968 AAAGTTGTTTACAAAATGACAATCTATTTAGATCAAATGATGCGATTT-TCCGAACATTGAATGT
65 AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCT-CGAGCATGGAATGT
* * *
1032 TCGAAAAATTTG-TAGAAGGAATGGATCGCATAGAATGCTTTAAGGAACATAAGTTATAAAAGAA
129 TCGAAAAA-TTGCTCGAAGGAATGGATCGC-TTGAATACTTTAAGGAACATAAGTTATAAAAGAA
*
1096 CTCGTAAAAGTTTGACAAGTTCGG
192 CTCGTAAAAGTTTGACAAGTTCAG
* * * *
1120 GAGTTCATCCAAGAACTAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACGAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * * *
1185 AAGTTGTTTACAAAATGACAAAATATTTAGACCGAATGGTGCTATTTC-CTGAGCATGGAATGTT
66 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC-GAGCATGGAATGTT
* * *
1249 CGGAATATTGATCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC-TAAAGTTATAAAAGAAC
130 CGAAAAATTGCTCGAAGGAATGGATCG-CTTGAATACTTTAAGGAACAT-AAGTTATAAAAGAAC
* *
1313 TCGTAAAAGCTTGACTAGTTCAG
193 TCGTAAAAGTTTGACAAGTTCAG
* **
1336 AAGTTCGTCTAAGAACCAA-AGGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTGAAGACCA
1 AAGTTCGTCCAAGAACCAAGA-GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * * * *
1400 AAACTTGGTTT-CAAAATGACAAACTATTTAGGCCAAAAGATGCAATTGCTCGAGCAAGGAATGT
65 AAAGTT-GTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGT
* * * * * * *
1464 TTGGAAAATTGCTCGTAGAAATGGATGGTCTTGAATACTTTAAGGAACAAAAGTTATAAAATAAC
129 TCGAAAAATTGCTCGAAGGAATGGATCG-CTTGAATACTTTAAGGAACATAAGTTATAAAAGAAC
* *
1529 TCGTAAAAGTTTTACAAGTTCGG
193 TCGTAAAAGTTTGACAAGTTCAG
* * * *
1552 TAGTTCGTCCAAGAACCGAGAGAGAAACAATTTTCACATAAATAAGTTTTTAATTCAAAGACCAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * * * * *
1617 AAGTTGTTTAC-AAATGACAAACTATTTAAACCAAAAGATTCGATTTCTGGAGAACGGAATGTTC
66 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTC
* ** * * * * *
1681 G-AAAATTGCTCG-ATGAAGTGGATCATTTATAATACACTTCAAGAAACAAAAGTTTTAAAAGAA
131 GAAAAATTGCTCGAAGGAA-TGGATCGCTT-GAAT--ACTTTAAGGAACATAAGTTATAAAAGAA
*
1744 CTTGTAAAAGTTTGACAAGTTCA-
192 CTCGTAAAAGTTTGACAAGTTCAG
* * * *
1767 AAGGTTCGTCCAAGAGCCAAGAGAGAAACAAATCCCACGTCAATAAGTTTTTAATTCAAAGACCA
1 AA-GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * *
1832 AAAGTTGTTTACAAAATGACAATCTATTTAGATCAAATGATGCGATTT-TCCGAACATTGAATGT
65 AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCT-CGAGCATGGAATGT
* * * *
1896 TCGAAAAATTTG-TAGAAGGAATGGATCACATAGAATGCTTTAAGGAACATAAGTTATAAAAGAA
129 TCGAAAAA-TTGCTCGAAGGAATGGATCGC-TTGAATACTTTAAGGAACATAAGTTATAAAAGAA
*
1960 CTCGTAAAAGTTTGACAAGTTCGG
192 CTCGTAAAAGTTTGACAAGTTCAG
* * * *
1984 GAGTTCATCCAAGAA-CTA-AGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * * * * *
2047 AAGTTGTTTATAAAATGAAAAAATATTTAGACCGAATGATGCGATTTCTCAAGCATGGAATGTTT
66 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTC
* * * * * * * *
2112 GGAATATTGCTTGAAAGAATGAATCGTCTTGAATACTTTAAGGAACCA-ATGTTGTAAAAGAAGT
131 GAAAAATTGCTCGAAGGAATGGATCG-CTTGAATACTTTAAGGAA-CATAAGTTATAAAAGAACT
* *
2176 CGTAAAAGCTTGAAAAGTTCAG
194 CGTAAAAGTTTGACAAGTTCAG
* *
2198 AAGTTCGTCTAAGAACCAAGAGAGAAACAATTATCACGTAAATAAGTTTTTAATTCAAAGACCAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * *
2263 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAGA-GATGCAATTGCTCGATCATGGAATGTT
66 AAGTTGTTTACAAAATGACAAACTATTTAGACCAA-ATGATGCGATTTCTCGAGCATGGAATGTT
* * * * * * *
2327 TGGAAAATAGCTCGTAA-AAATGGATGGTCTTGAATACTTTAAGGAACAGAAGTTATAAAATAAC
130 CGAAAAATTGCTCG-AAGGAATGGATCG-CTTGAATACTTTAAGGAACATAAGTTATAAAAGAAC
*
2391 TCGTAAAAGTTTTACAAGTTCAG
193 TCGTAAAAGTTTGACAAGTTCAG
* ** * *
2414 TAGTTCGTCCAAGAACTGAGAGAGAAACAATAT-TCACATAAATAAGTTTTTAATTCGAAGACCA
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAAT-TCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * * * * * *
2478 AAAGTTGTTTACAAAATGACCAACTCTTTAAACAAAACGATTCGATTTCTGGAGAATGGAATGTT
65 AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTT
* * ** * * ** *
2543 CG-AAAATTGGTCG-ATGAAGTGGATCATTTATAATACACTTCAACAAAC-TGAAGTTTTAAAAG
130 CGAAAAATTGCTCGAAGGAA-TGGATCGCTT-GAAT--ACTTTAAGGAACAT-AAGTTATAAAAG
* *
2605 AACTTGTAAAAGTTTGACAAGTTCGG
190 AACTCGTAAAAGTTTGACAAGTTCAG
* * * * * * * * * *
2631 AGGTTCATTCAAGAGCCAAGAAAGAAACAAATCCCACGTCAATAAGTTGTTAATTCAAAGATCAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * * ***
2696 AAGTTGTTTACAAAATAACAAACTATTTAGATCAAATGATGCGA-TTCTCCGAACATTTTATGTT
66 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCT-CGAGCATGGAATGTT
** * *
2760 CGAAAAATTTG-TAAAAGGAATGGATCGCATAGAATGCTTTAAGGAACATAAGTTATAAAAGAAC
130 CGAAAAA-TTGCTCGAAGGAATGGATCGC-TTGAATACTTTAAGGAACATAAGTTATAAAAGAAC
**
2824 TCGTAAATTTTTGACAAGTTC-G
193 TCGTAAAAGTTTGACAAGTTCAG
* * * ** *
2846 GAGTTCATCCAGGAAAGAAGAGAGAAACAATTCTCACGTTAATAAGTTTTTAATTCAAAGACCAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * * * *
2911 AATTTGTTTACAAAATGACAAAATATTTAGACCGAATGATGCGATTTCTCGAGTATGGAATGTTT
66 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTC
* * * * * * * * *
2976 GGAATATTGCTTGAAAGAATGAATCTTCTTGAATACTTTGAGGAATCA-ATGTTATAAAAGAAGT
131 GAAAAATTGCTCGAAGGAATGGATC-GCTTGAATACTTTAAGGAA-CATAAGTTATAAAAGAACT
* *
3040 CGTAAAAGCTTGAAAAGTTCAG
194 CGTAAAAGTTTGACAAGTTCAG
* *
3062 AAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTCAATTCAAACG-CCA
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA-GACCA
* * *
3126 AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAGTGATGCAATTTCCCGAGCATGGAATGTT
65 AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTT
* * * ** * *
3191 CGCAAAATTGCTCGAAGAAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAACAGAAAT
130 CGAAAAATTGCTCGAAGGAATGGATC-GCTTGAATACTTTAAGGAACATAAGTTATAAAAGAACT
* * *
3256 AGTAAAAGTTT-CCTAGTTC-G
194 CGTAAAAGTTTGACAAGTTCAG
* * * *
3276 AAAGTTCGTCCAAGAACCAAGAGAGAAACAATT-TACACATAAATAAATATTTAATTCAATGACC
1 -AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT-CACGTAAATAAGTTTTTAATTCAAAGACC
* * *
3340 AAAAGTTGTTTACAAAATGACAAGCTATTTTGACCGAATGATGCGATTTCTCGAGCATGGAATGT
64 AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGT
* *
3405 TCGAAATATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAAC-TGAAGTTATAAAAGAA
129 TCGAAAAATTGCTCGAAGGAATGGATC-GCTTGAATACTTTAAGGAACAT-AAGTTATAAAAGAA
* * * *
3469 ATTGTAAAAGCTTGACAAGTTCTG
192 CTCGTAAAAGTTTGACAAGTTCAG
* * * * * * * * *
3493 AAGCTT-GTCTAAGAATCAAGAGAGAAATAATT-TCACATAAATATGATCTAAATTCAAAAACCA
1 AAG-TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
** * * * *
3556 AAAGTTGTTTACAAAATGACAAACTATTTAGATAAAATGATGCGATTTTTCGAACTTGCAATGTT
65 AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTT
* * * * * *
3621 CAAAAAAATTTCTAG-AGGTAATGGATCACATAGAATACTTTAAGGAACCTAAGTTATAAAAG-A
130 C-GAAAAATTGCTCGAAGG-AATGGATCGC-TTGAATACTTTAAGGAACATAAGTTATAAAAGAA
* *
3684 CTCATAAAAGTTTGACTAGTTC-G
192 CTCGTAAAAGTTTGACAAGTTCAG
* * * * * *
3707 AAAGTTCATCCAAGAACTAAGAGACAAAC----C-CACGTCATTAAGTTTTTAATTGAAAGACCA
1 -AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * *
3767 AAAGTTGTTTACAAAATGACAAAATATTTAGACCGAATAATGCGATTTC-CCAGGCATGGAATGT
65 AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGA-GCATGGAATGT
* * * ** * *
3831 TAGGAATAA-TGCTCAAAACAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAC
129 T-CGAAAAATTGCTCGAAGGAATGGATCG-CTTGAATACTTTAAGGAACATAAGTTATAAAAGAA
* * * *
3895 CTCGAAAAAGCTTGAAAATTTCAG
192 CTCGTAAAAGTTTGACAAGTTCAG
*
3919 AAGTTCGTCTACAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
1 AAGTTCGTCCA-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
*
3984 AAAGTTGTTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTCTCGAGCATGGAATGTT
65 AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTT
* * * * * *
4049 C-AGAATATTGCTCGAAGGAATGGATCATCTTGATTACTTTAAGGAAC-TGGACTTATAAATGAA
130 CGA-AAAATTGCTCGAAGGAATGGATC-GCTTGAATACTTTAAGGAACAT-AAGTTATAAAAGAA
* * * * *
4112 ATAGTAAAAGCTTGACCAGTTTAG
192 CTCGTAAAAGTTTGACAAGTTCAG
* * * * * * * * * * *
4136 AAGTTTGTCTAAGGATCAAGAAAGAAATAA-TATCACATAAATATGATTTTAATTGAAAGACCAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
** * * *
4200 AAGTTGTTTACAAAATGACAAACTATTTAGATAAAATGATGCGATTTTTCGAACATGCAATGTTC
66 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTC
* * * * *
4265 TAAAAAATCT-CTAGAAGGAATGGATCACATAGAATACTTTAAGGAACCTAAGTTATAAAAGAAC
131 -GAAAAAT-TGCTCGAAGGAATGGATCGC-TTGAATACTTTAAGGAACATAAGTTATAAAAGAAC
* *
4329 TCATAAAAGTTTGACTAGTTC-G
193 TCGTAAAAGTTTGACAAGTTCAG
* * * * *
4351 AAAGTTCATCCAAGAACTAAGAGAGAAACAATTCCCACGTCATTAAGTTTTTAATTCAAAGACCA
1 -AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* *
4416 AAAGTTGTTTACAAAATGACAGAA-TATTTAGACCGAATGATGCGATTTCCCGA-CATGGAATGT
65 AAAGTTGTTTACAAAATGACA-AACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGT
* * **
4479 TAGGAATAA-TGCTCGAAAAAATGGATCGTCTTGAATACTTTAAGGAACGA-AAGTTATAAAAGA
129 T-CGAAAAATTGCTCGAAGGAATGGATCG-CTTGAATACTTTAAGGAAC-ATAAGTTATAAAAGA
* * *
4542 ACTCGTAAAAGCTTGAAAAGTTCAA
191 ACTCGTAAAAGTTTGACAAGTTCAG
* * * *
4567 AAGTTTGTCTAGGAACCAAAAGAGAAACAATTCTCACGTAAATAAG-TTTTAATTCAAAGACCAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * * * * *
4631 AAGTTGTTTATAAAATGACAAACTATTTAAACCAAAAGATTCGATTT-TCGGAGAATGGAATTTT
66 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC-GAGCATGGAATGTT
4695 CG-AAAATTGCTCGA
130 CGAAAAATTGCTCGA
4709 TGAAGTGGAT
Statistics
Matches: 3675, Mismatches: 656, Indels: 258
0.80 0.14 0.06
Matches are distributed among these distances:
210 42 0.01
211 104 0.03
212 16 0.00
213 16 0.00
214 272 0.07
215 769 0.21
216 1387 0.38
217 669 0.18
218 227 0.06
219 27 0.01
220 140 0.04
221 6 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (215 bp):
AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTC
GAAAAATTGCTCGAAGGAATGGATCGCTTGAATACTTTAAGGAACATAAGTTATAAAAGAACTCG
TAAAAGTTTGACAAGTTCAG
Found at i:1987 original size:864 final size:865
Alignment explanation
Indices: 11--4708 Score: 5875
Period size: 864 Copynumber: 5.4 Consensus size: 865
1 AACAGAAATA
** * * ** * *
11 GTAAAAGTTTTCCTAGTTCGAAA-GTTCGTCCAAGAACCAAGAGAGAAACAATTTACACATAAAT
1 GTAAAAGTTTGACAAGTTCGAAAGGTTCGTCCAAGAACCAAGAGAGAAACAAATCCCACGTCAAT
* * * * * ** * *
75 AAGTATTTAAATCAATGACCGAAAGTTTTTTTACAAAATGGTAGACTATTTAGATCGAATGACGC
66 AAGTTTTTAATTCAAAGACCAAAAG-TTGTTTACAAAATGACA-ACTATTTAGATCAAATGATGC
* * * * * * * * *
140 GATTTCCCGAGCATGGAATGTTCGAAATA-TTGCTCGGAGGATTGGGTCATC-TTGAATACTTTA
129 GATTTTCCGAACATTGAATGTTCGAAAAATTTG-TAGAAGGAATGGATCA-CATAGAATACTTTA
* * * * * ** *
203 AGGAACCGGAGTTA-TTATAAAAGAAATAGTAAAAGCTTGACAAGTTCAGAAGTTTGTCTAAGAA
192 AGGAA-C--A-TAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAG-A
* * * * *
267 AC-AAAAGAGAAATAATTCTCACATAAATATA-TTTTTAATTCAAAGTCCAAAAAGTTGTTTTCA
252 ACTAAGAGAGAAACAATTCTCACGTAAATA-AGTTTTTAATTCAAAGACC-AAAAGTTGTTTACA
* * * * * * * *
330 AAATGACAAACTATTTAGACCGCATAATGCTATTACCCGAGCATGGAGTGTTCGGAATATTGATC
315 AAATGACAAAATATTTAGACCGAATGATGCGATTTCCTGAGCATGGAATGTTCGGAATATTGCTC
*
395 GAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGCTTGA
380 GAAAGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGCTTGA
**
460 CTAGTTCAGAAGTTCGTCTAAGAACCAA-AGGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
445 AAAGTTCAGAAGTTCGTCTAAGAACCAAGA-GAGAAACAATTCTCACGTAAATAAGTTTTTAATT
** * * *
524 TGAAGACCAAAACTTGGTTTTCCAAAATGACAAACTATTTAGACCAAAAGATGCAATTGCTCGTG
509 CAAAGACCAAAAGTT-G-TTTACAAAATGACAAACTATTTAGACCAAAAGATGCAATTGCTCGAG
* * * *
589 CATGGAATGTTTGGAAAATAGCTCGTAAAAATGGATGGTCTAGAATACTTTAAGGAACAAAAGTT
572 CATGGAATGTTTGGAAAATTGCTCGTAGAAATGGATGGTCTTGAATACTTTAAGGAACAGAAGTT
654 ATAAAATAACTCGTAAAAGTTTTACAAGTTCGGTAGTTCGTCCAAGAACCGAGAGAGAAACAATT
637 ATAAAATAACTCGTAAAAGTTTTACAAGTTCGGTAGTTCGTCCAAGAACCGAGAGAGAAACAATT
719 TTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAAC
702 TTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAAC
* *
784 CAAAAGATTCAATTTCTGGATAATGGAATGTTCGAAAATTGCTCGATGAAGTGGATCATTTATAA
767 CAAAAGATTCGATTTCTGGAGAATGGAATGTTCGAAAATTGCTCGATGAAGTGGATCATTTATAA
849 TACACTTCAAGAAACAAAAGTTTTAAAAGAACTT
832 TACACTTCAAGAAACAAAAGTTTTAAAAGAACTT
*
883 GTAAAAGTTTGACAAGTTC-AAAGGTTCGTCCAAGAGCCAAGAGAGAAACAAATCCCACGTCAAT
1 GTAAAAGTTTGACAAGTTCGAAAGGTTCGTCCAAGAACCAAGAGAGAAACAAATCCCACGTCAAT
947 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGATCAAATGATGCG
66 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGATCAAATGATGCG
* *
1012 ATTTTCCGAACATTGAATGTTCGAAAAATTTGTAGAAGGAATGGATCGCATAGAATGCTTTAAGG
130 ATTTTCCGAACATTGAATGTTCGAAAAATTTGTAGAAGGAATGGATCACATAGAATACTTTAAGG
*
1077 AACATAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGGAGTTCATCCAAGAACTAAGAG
195 AACATAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACTAAGAG
*
1142 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACGAAAAGTTGTTTACAAAATGACAAA
260 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAA
* * * *
1207 ATATTTAGACCGAATGGTGCTATTTCCTGAGCATGGAATGTTCGGAATATTGATCGAAGGAATGG
325 ATATTTAGACCGAATGATGCGATTTCCTGAGCATGGAATGTTCGGAATATTGCTCGAAAGAATGG
* **
1272 ATCGTCTTGAATACTTTAAGGAACTAAAGTTATAAAAGAACTCGTAAAAGCTTGACTAGTTCAGA
390 ATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGCTTGAAAAGTTCAGA
**
1337 AGTTCGTCTAAGAACCAA-AGGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTGAAGACCAA
455 AGTTCGTCTAAGAACCAAGA-GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * *
1401 AACTTGGTTT-CAAAATGACAAACTATTTAGGCCAAAAGATGCAATTGCTCGAGCAAGGAATGTT
519 AAGTT-GTTTACAAAATGACAAACTATTTAGACCAAAAGATGCAATTGCTCGAGCATGGAATGTT
*
1465 TGGAAAATTGCTCGTAGAAATGGATGGTCTTGAATACTTTAAGGAACAAAAGTTATAAAATAACT
583 TGGAAAATTGCTCGTAGAAATGGATGGTCTTGAATACTTTAAGGAACAGAAGTTATAAAATAACT
1530 CGTAAAAGTTTTACAAGTTCGGTAGTTCGTCCAAGAACCGAGAGAGAAACAATTTTCACATAAAT
648 CGTAAAAGTTTTACAAGTTCGGTAGTTCGTCCAAGAACCGAGAGAGAAACAATTTTCACATAAAT
1595 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC-AAATGACAAACTATTTAAACCAAAAGATTCG
713 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACCAAAAGATTCG
*
1659 ATTTCTGGAGAACGGAATGTTCGAAAATTGCTCGATGAAGTGGATCATTTATAATACACTTCAAG
778 ATTTCTGGAGAATGGAATGTTCGAAAATTGCTCGATGAAGTGGATCATTTATAATACACTTCAAG
1724 AAACAAAAGTTTTAAAAGAACTT
843 AAACAAAAGTTTTAAAAGAACTT
*
1747 GTAAAAGTTTGACAAGTTC-AAAGGTTCGTCCAAGAGCCAAGAGAGAAACAAATCCCACGTCAAT
1 GTAAAAGTTTGACAAGTTCGAAAGGTTCGTCCAAGAACCAAGAGAGAAACAAATCCCACGTCAAT
1811 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTTAGATCAAATGATGCG
66 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA-CTATTTAGATCAAATGATGCG
*
1876 ATTTTCCGAACATTGAATGTTCGAAAAATTTGTAGAAGGAATGGATCACATAGAATGCTTTAAGG
130 ATTTTCCGAACATTGAATGTTCGAAAAATTTGTAGAAGGAATGGATCACATAGAATACTTTAAGG
*
1941 AACATAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGGAGTTCATCCAAGAACT-A-AG
195 AACATAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACTAAGAG
* * *
2004 AGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGAAAAA
260 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAA
* * *
2069 ATATTTAGACCGAATGATGCGATTT-CTCAAGCATGGAATGTTTGGAATATTGCTTGAAAGAATG
325 ATATTTAGACCGAATGATGCGATTTCCT-GAGCATGGAATGTTCGGAATATTGCTCGAAAGAATG
* * * *
2133 AATCGTCTTGAATACTTTAAGGAACCAATGTTGTAAAAGAAGTCGTAAAAGCTTGAAAAGTTCAG
389 GATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGCTTGAAAAGTTCAG
*
2198 AAGTTCGTCTAAGAACCAAGAGAGAAACAATTATCACGTAAATAAGTTTTTAATTCAAAGACCAA
454 AAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* *
2263 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAGAGATGCAATTGCTCGATCATGGAATGTTT
519 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAAAGATGCAATTGCTCGAGCATGGAATGTTT
* *
2328 GGAAAATAGCTCGTAAAAATGGATGGTCTTGAATACTTTAAGGAACAGAAGTTATAAAATAACTC
584 GGAAAATTGCTCGTAGAAATGGATGGTCTTGAATACTTTAAGGAACAGAAGTTATAAAATAACTC
* * *
2393 GTAAAAGTTTTACAAGTTCAGTAGTTCGTCCAAGAACTGAGAGAGAAACAATATTCACATAAATA
649 GTAAAAGTTTTACAAGTTCGGTAGTTCGTCCAAGAACCGAGAGAGAAACAATTTTCACATAAATA
* * *
2458 AGTTTTTAATTCGAAGACCAAAAGTTGTTTACAAAATGACCAACTCTTTAAA-CAAAACGATTCG
714 AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACCAAAA-GATTCG
* *
2522 ATTTCTGGAGAATGGAATGTTCGAAAATTGGTCGATGAAGTGGATCATTTATAATACACTTCAAC
778 ATTTCTGGAGAATGGAATGTTCGAAAATTGCTCGATGAAGTGGATCATTTATAATACACTTCAAG
**
2587 AAACTGAAGTTTTAAAAGAACTT
843 AAACAAAAGTTTTAAAAGAACTT
* * * * *
2610 GTAAAAGTTTGACAAGTTCG-GAGGTTCATTCAAGAGCCAAGAAAGAAACAAATCCCACGTCAAT
1 GTAAAAGTTTGACAAGTTCGAAAGGTTCGTCCAAGAACCAAGAGAGAAACAAATCCCACGTCAAT
* * *
2674 AAGTTGTTAATTCAAAGATCAAAAGTTGTTTACAAAATAACAAACTATTTAGATCAAATGATGCG
66 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAC-AACTATTTAGATCAAATGATGCG
* ** * * *
2739 ATTCTCCGAACATTTTATGTTCGAAAAATTTGTAAAAGGAATGGATCGCATAGAATGCTTTAAGG
130 ATTTTCCGAACATTGAATGTTCGAAAAATTTGTAGAAGGAATGGATCACATAGAATACTTTAAGG
** * **
2804 AACATAAGTTATAAAAGAACTCGTAAATTTTTGACAAGTTCGG-AGTTCATCCAGGAAAGAAGAG
195 AACATAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACTAAGAG
* *
2868 AGAAACAATTCTCACGTTAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAA
260 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAA
* * *
2933 ATATTTAGACCGAATGATGCGATTT-CTCGAGTATGGAATGTTTGGAATATTGCTTGAAAGAATG
325 ATATTTAGACCGAATGATGCGATTTCCT-GAGCATGGAATGTTCGGAATATTGCTCGAAAGAATG
* * * * * *
2997 AATCTTCTTGAATACTTTGAGGAATCAATGTTATAAAAGAAGTCGTAAAAGCTTGAAAAGTTCAG
389 GATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGCTTGAAAAGTTCAG
*
3062 AAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTCAATTCAAACG-CCA
454 AAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA-GACCA
** * *
3126 AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAGTGATGCAATTTCCCGAGCATGGAATGTT
518 AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAAGATGCAATTGCTCGAGCATGGAATGTT
* * * ** * * * *
3191 CGCAAAATTGCTCGAAGAAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAACAGAAAT
583 TGGAAAATTGCTCGTAGAAATGGATGGTCTTGAATACTTTAAGGAACAGAAGTTATAAAATAACT
* * * ** * *
3256 AGTAAAAG-TTTCCTAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTTACACATAAAT
648 CGTAAAAGTTTTACAAGTTCGGTAGTTCGTCCAAGAACCGAGAGAGAAACAATTTTCACATAAAT
* * * * ** * * *
3320 AAATATTTAATTCAATGACCAAAAGTTGTTTACAAAATGACAAGCTATTTTGACCGAATGATGCG
713 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACCAAAAGATTCG
* * * * *
3385 ATTTCTCGAGCATGGAATGTTCGAAATATTGCTCGAAGGAA-TGGATCATCTT-GAAT--ACTTT
778 ATTTCTGGAGAATGGAATGTTCGAAA-ATTGCTCG-ATGAAGTGGATCAT-TTATAATACACTTC
* ** * *
3446 AAGGAACTGAAGTTATAAAAGAAATT
840 AAGAAACAAAAGTTTTAAAAGAACTT
* * * * * ** * *
3472 GTAAAAGCTTGACAAGTTCTG-AAGCTT-GTCTAAGAATCAAGAGAGAAA-TAATTTCACATAAA
1 GTAAAAGTTTGACAAGTTC-GAAAGGTTCGTCCAAGAACCAAGAGAGAAACAAATCCCACGTCAA
* * * * * *
3534 TATGATCTAAATTCAAAAACCAAAAGTTGTTTACAAAATGACAAACTATTTAGATAAAATGATGC
65 TAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAC-AACTATTTAGATCAAATGATGC
* * *
3599 GATTTTTCGAAC-TTGCAATGTTCAAAAAAATTTCTAG-AGGTAATGGATCACATAGAATACTTT
129 GATTTTCCGAACATTG-AATGTTC-GAAAAATTTGTAGAAGG-AATGGATCACATAGAATACTTT
* * * *
3662 AAGGAACCTAAGTTATAAAAG-ACTCATAAAAGTTTGACTAGTTCGAAAGTTCATCCAAGAACTA
191 AAGGAACATAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACTA
* * * *
3726 AGAGACAAAC----C-CACGTCATTAAGTTTTTAATTGAAAGACCAAAAGTTGTTTACAAAATGA
256 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
* * * * * *
3786 CAAAATATTTAGACCGAATAATGCGATTTCC-CAGGCATGGAATGTTAGGAATAATGCTCAAAAC
321 CAAAATATTTAGACCGAATGATGCGATTTCCTGA-GCATGGAATGTTCGGAATATTGCTCGAAAG
* * * *
3850 AATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGACCTCGAAAAAGCTTGAAAATT
385 AATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGCTTGAAAAGT
3915 TCAGAAGTTCGTCTACAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
450 TCAGAAGTTCGTCTA-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
* * * *
3980 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTCTCGAGCATGGAA
514 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAAGATGCAATTGCTCGAGCATGGAA
** * * * ** * * * *
4045 TGTTCAGAATATTGCTCGAAGGAATGGATCATCTTGATTACTTTAAGGAACTGGACTTAT-AAAT
579 TGTTTGGAAAATTGCTCGTAGAAATGGATGGTCTTGAATACTTTAAGGAACAGAAGTTATAAAAT
* * * * * ** * * * * * * * * *
4109 GAAATAGTAAAAGCTTGACCAGTTTAGAAGTTTGTCTAAGGATCAAGAAAGAAATAA-TATCACA
644 -AACTCGTAAAAGTTTTACAAGTTCGGTAGTTCGTCCAAGAACCGAGAGAGAAACAATTTTCACA
* * * * *
4173 TAAATATGATTTTAATTGAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGA-TAAAAT
708 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACCAAAA-
* * * * * * * ** *
4237 GATGCGATTTTTCGA-ACATGCAATGTTCTAAAAAAT-CTCTA-GAAGGAATGGATCACATAGAA
772 GATTCGATTTCTGGAGA-ATGGAATGTTC-GAAAATTGCTCGATGAA-G--TGGATCATTTATAA
* * ** * *
4299 T--ACTTTAAGGAACCTAAGTTATAAAAGAACTC
832 TACACTTCAAGAAACAAAAGTTTTAAAAGAACTT
* * * * * *
4331 ATAAAAGTTTGACTAGTTCGAAA-GTTCATCCAAGAACTAAGAGAGAAACAATTCCCACGTCATT
1 GTAAAAGTTTGACAAGTTCGAAAGGTTCGTCCAAGAACCAAGAGAGAAACAAATCCCACGTCAAT
* * *
4395 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAGAATATTTAGACCGAATGATGCG
66 AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACA-ACTATTTAGATCAAATGATGCG
* * * * * ** * *
4460 ATTTCCCG-ACATGGAATGTTAGGAATAA--TGCTCGAAAAAATGGATCGTC-TTGAATACTTTA
130 ATTTTCCGAACATTGAATGTT-CGAAAAATTTG-TAGAAGGAATGGATC-ACATAGAATACTTTA
* * ** ** * * *
4521 AGGAACGA-AAGTTATAAAAGAACTCGTAAAAGCTTGAAAAGTTCAAAAGTTTGTCTAGGAACCA
192 AGGAAC-ATAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACTA
* *
4585 AAAGAGAAACAATTCTCACGTAAATAAG-TTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGA
256 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
* * * * * * * * * *
4649 CAAACTATTTAAACCAAAAGATTCGATTTTCGGAGAATGGAATTTTC-GAAAATTGCTCGA
321 CAAAATATTTAGACCGAATGATGCGATTTCCTGAGCATGGAATGTTCGGAATATTGCTCGA
4709 TGAAGTGGAT
Statistics
Matches: 3408, Mismatches: 361, Indels: 124
0.88 0.09 0.03
Matches are distributed among these distances:
855 3 0.00
856 2 0.00
857 176 0.05
858 297 0.09
859 163 0.05
860 72 0.02
861 111 0.03
862 605 0.18
863 522 0.15
864 770 0.23
865 218 0.06
866 3 0.00
867 222 0.07
868 80 0.02
870 3 0.00
871 86 0.03
872 75 0.02
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (865 bp):
GTAAAAGTTTGACAAGTTCGAAAGGTTCGTCCAAGAACCAAGAGAGAAACAAATCCCACGTCAAT
AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGATCAAATGATGCGA
TTTTCCGAACATTGAATGTTCGAAAAATTTGTAGAAGGAATGGATCACATAGAATACTTTAAGGA
ACATAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACTAAGAGA
GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAAA
TATTTAGACCGAATGATGCGATTTCCTGAGCATGGAATGTTCGGAATATTGCTCGAAAGAATGGA
TCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGCTTGAAAAGTTCAGAA
GTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
GTTGTTTACAAAATGACAAACTATTTAGACCAAAAGATGCAATTGCTCGAGCATGGAATGTTTGG
AAAATTGCTCGTAGAAATGGATGGTCTTGAATACTTTAAGGAACAGAAGTTATAAAATAACTCGT
AAAAGTTTTACAAGTTCGGTAGTTCGTCCAAGAACCGAGAGAGAAACAATTTTCACATAAATAAG
TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACCAAAAGATTCGATT
TCTGGAGAATGGAATGTTCGAAAATTGCTCGATGAAGTGGATCATTTATAATACACTTCAAGAAA
CAAAAGTTTTAAAAGAACTT
Done.