Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011178.1 Kokia drynarioides strain JFW-HI SEQ_126154, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4205
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.34


Found at i:3488 original size:22 final size:23

Alignment explanation


    Indices: 3463--3511  Score: 55
    Period size: 26  Copynumber: 2.0  Consensus size: 23

       3453 GAAAGTACCG

                                   
       3463 AAGTACTT-AACAGTAAGCACAC
          1 AAGTACTTGAACAGTAAGCACAC

                *                     
       3485 AAGTGCTTGGGAAACAGTAAGCACAC
          1 AAGTACTT--G-AACAGTAAGCACAC

             
       3511 A
          1 A

       3512 CAGTGCAATC


Statistics
Matches: 22,  Mismatches: 1, Indels: 4
        0.81            0.04        0.15

Matches are distributed among these distances:
  22    7  0.32
  26   15  0.68

ACGTcount: A:0.43, C:0.20, G:0.20, T:0.16


Consensus pattern (23 bp):   
AAGTACTTGAACAGTAAGCACAC

Found at i:3548 original size:23 final size:23

Alignment explanation


    Indices: 3518--3579  Score: 115
    Period size: 23  Copynumber: 2.7  Consensus size: 23

       3508 CACACAGTGC

                                   
       3518 AATCAGTAGGCGCACATAGCGCA
          1 AATCAGTAGGCGCACATAGCGCA

                                   
       3541 AATCAGTAGGCGCACATAGCGCA
          1 AATCAGTAGGCGCACATAGCGCA

                       *    
       3564 AATCAGTAGGCACACA
          1 AATCAGTAGGCGCACA

       3580 AGGTGAGAAA


Statistics
Matches: 38,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  23   38  1.00

ACGTcount: A:0.37, C:0.26, G:0.24, T:0.13


Consensus pattern (23 bp):   
AATCAGTAGGCGCACATAGCGCA
Done.