genome.fa.s11180.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011180.1 Kokia drynarioides strain JFW-HI SEQ_126156, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111212

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6585--6610	2	13.0	2	100	0	52	50	0	0	50	1.00
10108--10160	27	2.0	27	84	0	70	22	18	16	41	1.90
10868--10935	30	2.3	30	86	0	100	23	7	4	64	1.37
11038--11087	4	12.2	4	80	16	50	26	2	20	52	1.57
11044--11201	12	12.4	13	66	22	59	25	2	15	55	1.53
11113--11213	21	5.3	21	69	20	87	18	2	16	61	1.47
11114--11219	37	2.9	37	94	0	185	18	2	16	61	1.47
11077--11217	74	1.9	73	82	8	178	24	2	15	57	1.52
13762--13793	17	1.9	16	93	6	55	62	15	12	9	1.54
15446--15621	23	7.6	23	78	9	169	44	20	21	13	1.85
15498--15621	23	5.3	23	88	3	176	43	22	20	12	1.86
15446--15621	71	2.5	68	86	9	223	44	20	21	13	1.85
21283--21332	24	2.1	23	85	3	64	22	10	8	60	1.55
24305--24373	31	2.2	31	82	5	77	23	18	13	44	1.84
24897--24941	23	2.0	23	86	8	65	64	4	2	28	1.25
26434--26493	29	2.1	29	100	0	120	38	23	13	25	1.91
27952--27993	21	2.0	21	86	9	59	71	11	9	7	1.31
32001--32448	122	3.6	122	83	6	546	27	17	24	29	1.98
31993--32452	164	2.8	162	83	6	581	27	17	24	30	1.97
32001--32452	42	11.0	42	84	5	523	27	17	24	30	1.97
32687--32808	47	2.5	49	76	2	131	18	24	16	40	1.90
32693--33502	49	16.4	50	66	13	153	19	28	16	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32836--33502	99	6.8	100	82	3	663	19	29	16	35	1.93
32985--33200	50	4.4	49	71	11	172	18	26	17	36	1.94
32886--33502	49	12.5	50	66	9	212	19	28	15	35	1.93
32854--33505	296	2.2	297	81	6	745	19	28	15	35	1.93
34033--34243	112	1.9	115	89	5	331	37	10	20	31	1.86
34553--34607	18	3.2	17	85	12	69	0	18	0	81	0.68
34550--34621	32	2.3	30	86	6	99	2	16	0	80	0.83
35415--35451	18	2.1	18	90	5	58	0	21	0	78	0.75
39717--39765	17	2.8	18	78	12	57	48	8	16	26	1.73
39950--40007	29	2.0	29	83	6	73	36	5	25	32	1.78
39966--40119	30	5.1	29	77	11	134	32	5	22	38	1.78
39964--40119	59	2.6	60	82	7	167	33	5	22	38	1.78
45238--45294	30	1.9	29	82	3	69	42	0	5	52	1.24
45846--45888	13	3.3	13	83	9	52	25	4	0	69	1.07
46002--46070	17	3.9	17	75	9	59	28	2	5	62	1.33
47076--47121	18	2.6	17	83	10	65	60	2	2	34	1.21
47711--47764	27	2.0	27	81	3	63	29	1	5	62	1.28
52448--52490	17	2.5	17	84	0	50	55	13	11	18	1.68
59099--59133	18	1.9	18	88	0	52	14	17	28	40	1.88
65195--65254	3	20.0	3	100	0	120	33	0	0	66	0.92
67726--67787	30	2.2	28	88	8	90	25	30	3	40	1.72
81922--81978	22	2.6	22	97	0	105	47	5	7	40	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82041--82072	14	2.2	15	94	5	57	50	0	0	50	1.00
83027--83105	31	2.6	30	82	9	97	29	15	11	44	1.81
83327--83445	28	4.3	28	75	17	81	52	6	15	25	1.68
83364--83435	28	2.6	28	89	4	103	45	6	18	29	1.75
84099--84143	23	1.9	24	86	13	67	20	0	2	77	0.87
84099--84143	24	1.9	23	86	4	63	20	0	2	77	0.87
92548--92595	19	2.5	19	86	6	62	29	27	20	22	1.99
92559--92601	19	2.3	19	91	0	68	32	27	20	18	1.96
93042--93081	18	2.3	18	95	4	73	27	32	10	30	1.89
93973--94019	11	4.2	11	76	15	51	36	2	0	61	1.08
94613--94798	60	3.1	58	83	6	223	26	15	10	47	1.78
95945--96032	10	9.4	9	72	14	54	28	4	1	65	1.19
95964--96060	29	3.4	27	75	11	88	30	4	2	62	1.25
95942--96060	56	2.1	54	80	11	141	30	4	1	63	1.23
96294--96349	22	2.5	22	77	5	60	32	23	10	33	1.89
96312--96418	56	1.9	56	92	3	180	25	17	12	44	1.83
96312--96430	56	2.1	56	89	3	177	26	17	13	42	1.87
100509--100561	26	2.0	27	81	3	63	11	9	1	77	1.07
103561--103626	10	6.7	10	76	8	55	36	1	1	60	1.15
106903--106951	21	2.3	21	85	0	62	20	12	38	28	1.89
107053--107090	19	2.0	19	94	0	67	26	23	2	47	1.65

Tables:   1

The End!