Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011181.1 Kokia drynarioides strain JFW-HI SEQ_126157, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5606
ACGTcount: A:0.40, C:0.11, G:0.07, T:0.41
Warning! 8 characters in sequence are not A, C, G, or T
Found at i:259 original size:89 final size:89
Alignment explanation
Indices: 3--5606 Score: 6279
Period size: 89 Copynumber: 64.0 Consensus size: 89
1 TA
* *
3 TCATTTATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTATA-AAAATTAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
*
67 GTTTTTTCACCTTTTTTAGTAATG
66 GTTTTTTCACCTTTTTTAGTAGTG
** * * * * * *
91 TCATCCATAATATAATATATTTCCAAATAT-AAA-AAA-ACATTTTAGGTAATAAATAAAATTCC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
* * * *
153 GTTGCTTT-ACTTTTTTTAGTATTA
66 GTT-TTTTCACCTTTTTTAGTAGTG
* * * * * *
177 TCATTCATAATATAATACATTTCCAAACAAAAAATAAAGACTTTTTAGGAAATAAAGAAAATTAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
**
242 GTTACTTCACCTTTTTTAGTAGTG
66 GTTTTTTCACCTTTTTTAGTAGTG
* * * * **
266 TTATTTATATTAGAATACATTTACAAACAT-AAA-AAA-ACATTTTAGGTATTAAATAAAACCAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
* * * *
328 GTTACTAT-ACCCTTTTTAATAGTG
66 GTT-TTTTCACCTTTTTTAGTAGTG
* * * **
352 TCATTCATAAAAAAATTTATTTCCAAACATAAAATAAAGA-TATTTTAGGTATTAAATAAAATTA
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACT-TTTTAGGTATTAAATAAAATTA
*
416 CGTTTTTTCACCTTTTTTAATAGTG
65 CGTTTTTTCACCTTTTTTAGTAGTG
*
441 TCATTTATAATAGAATACATTTCCAAACATAAAATAATGACTTTTTAGGTATTAAA-AAAATTAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
*
505 GTTTTTTCACCTTTTTTAGTTGTG
66 GTTTTTTCACCTTTTTTAGTAGTG
* * **
529 TCATTTATAATAGAATACATTTCCAAAAATAAAA-AAA-ACATTTTAGGTATTAAATAAAACCAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
** *
592 GTTACTTCACCTTTTTTAGTAATG
66 GTTTTTTCACCTTTTTTAGTAGTG
* * *
616 TCATTCATAAT-GTAATTCATTTCCAAACATAAAATAAAGAC-ATTTAGGTATTAAATAAAATTA
1 TCATTTATAATAG-AATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTA
* *
679 TGTTTTTTTCACCTTTTTTAGTAGTA
65 CG-TTTTTTCACCTTTTTTAGTAGTG
*
705 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTATA-AAAATTAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
*
769 GTTTTTTCACCTTTTTTAATAGTG
66 GTTTTTTCACCTTTTTTAGTAGTG
** * * * * * *
793 TCATCCATAATATAATATATTACCAAACAT-AAA-AAA-ACATTTTAGGTAATAAATAAAATTTC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
* * *
855 GTTGCTTT-ACTTTTTTTAGTATTG
66 GTT-TTTTCACCTTTTTTAGTAGTG
* * * * * *
879 TCATTCATAATATAATACATTTCCAAACATAAAATAAAGATTTTTTAGGAAATAAAGAAAATTAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
** *
944 GTTACTTGACCTTTTTTAGTAGTG
66 GTTTTTTCACCTTTTTTAGTAGTG
* * * * *
968 TTATTTATATTAGAATACATTTACAAACAT-AAA-AAA-ACATTTTAGGTATTAAATAAAATTAT
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
*
1030 GTTTTTTTCACCTTTTTTATTAGTG
66 G-TTTTTTCACCTTTTTTAGTAGTG
* * * *
1055 TTATTTATAATATAATACATTT-TAAACATAAAATAAAAACTTTTTAGGTATTAAA-AAAATTTA
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAA-TTA
* * *
1118 CCTTTTTTCACCTTTTTTACTAATG
65 CGTTTTTTCACCTTTTTTAGTAGTG
* * * * *
1143 TCATTTATAATAAAATACATTTTCAAATATAAAATAAAGACTTTTTAAGTATTATA-AAAATTAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
* *
1207 GTTTTTTTTACTTTTTTTAGTAGTG
66 G-TTTTTTCACCTTTTTTAGTAGTG
*
1232 TCATTTATAATAGAATACATTTTCAAACATAAAATAAAGACTTTTTAGGTATTAAA-AAAATTAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
* *
1296 GTTTTTTTACATTTTTTAGTAGTG
66 GTTTTTTCACCTTTTTTAGTAGTG
* * * * **
1320 CCATTTATATTAGAATACATTTCCAAACAT-AAA-AAA-ACATTTTAAGTATTAAATAAAACCAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
*
1382 GTTACTTT-ACCTTTTTTAGTAGTG
66 GTT-TTTTCACCTTTTTTAGTAGTG
* * * *
1406 TCATTCATAATAAAATTCATTTCCAAACATAAAATAAAGACATTTTAGGTATTAAATAAAATTAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
* *
1471 GTTTTTTCACTTTTTTTAATAGTG
66 GTTTTTTCACCTTTTTTAGTAGTG
* * *
1495 TCATTTATAATAGAATACATTTCCAAACATAAAAGAAAAACTTTTTAGGTATTAAAAAAAATTAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
* * *
1560 GGTTTTTCACCTTTTTTACTAGTA
66 GTTTTTTCACCTTTTTTAGTAGTG
* * * * * * *
1584 TTATTTATAATAGAATAAATTTCCAAACATAAAAGAAAAATTTTTTAGGTATTAAAAAAAATTAT
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
* *
1649 ATTTTTTCACCTTTTTTAGTAATG
66 GTTTTTTCACCTTTTTTAGTAGTG
* * * *
1673 TTATTTTTAATAGAATACATCTCTAAACATAAAATAAAGA-TATTTTAGGTATTAAA-AAAATTA
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACT-TTTTAGGTATTAAATAAAATTA
*
1736 CGTTTTTTCACCTTTTTTAATAGTG
65 CGTTTTTTCACCTTTTTTAGTAGTG
* * * * * **
1761 TAATTTATATTAGAATACATTTTCAAATAT-AAA-AAAG-CATTTTAGGTATTAAATAAAACCAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
* *
1823 -TTTACTTT-ATCTTTTTTAATAGTG
66 GTTT--TTTCACCTTTTTTAGTAGTG
* * * * *
1847 TCATTCATAATAAAATTCATTTCCAAACATAAAAGAAA-ATTTTTTTAGGTATTAAA-AAAATTA
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGA-CTTTTTAGGTATTAAATAAAATTA
*
1910 --TATTTTTCACCTTTTTTAGTAATG
65 CGT-TTTTTCACCTTTTTTAGTAGTG
* * **
1934 TTATTTTTAATAGAATACATTTTTAAACATAAAATAAAGA-TATTTTAGGTATTAAA-AAAATTA
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACT-TTTTAGGTATTAAATAAAATTA
* *
1997 CGCTTTTTCACCTTTTTTAATAGTG
65 CGTTTTTTCACCTTTTTTAGTAGTG
* * * * * **
2022 TAATTTATATTAGAATACATTTTCAAATAT-AAA-AAAG-CATTTTAGGTATTAAATAAAACCAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
*
2084 -TTTACTTT-ATCTTTTTTAGTAGTG
66 GTTT--TTTCACCTTTTTTAGTAGTG
* * * *
2108 TCATTCATAATAAAATTCATTTCCAAACATAAAATAAAGACATTTTAGGTATTAAATAAAATTAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
*
2173 GTTTTTTCACCTTTTTTATTAGTG
66 GTTTTTTCACCTTTTTTAGTAGTG
* * * * * *
2197 TCATTTATAATAGAATACATTTTCAAATATAAAAGAAAAAATTTTTAGGTATTAAAAAAAATTAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
* *
2262 ATTTTTTCACCTTTTTTACTAGTG
66 GTTTTTTCACCTTTTTTAGTAGTG
* * * * *
2286 TCATTTATAATATACTACATTTTCAAACATATAATAAAGACTTTTTAGGTATTATA-AAAATTAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
*
2350 GTTTTTTCACTTTTTTTAGTAGTG
66 GTTTTTTCACCTTTTTTAGTAGTG
* *
2374 TCATTTATAATAGAATACATTTCCAAACAT-AAA-AAA-ACATTTTAGGTATTAAATAAAACTAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
* *
2436 GTTACTTT-ACCTTTTTTAGTTGTG
66 GTT-TTTTCACCTTTTTTAGTAGTG
**
2460 TC-TTTCATAATTTAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTA
1 TCATTT-ATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTA
*
2524 CG-TTTTTCACCTTTTTTAGTAGTA
65 CGTTTTTTCACCTTTTTTAGTAGTG
* * *
2548 TTATTTATAATAGAATACATTTCCAAACATAAAATAAATACTTTTTAGGTATTATAAAAAAATTA
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTA-AATAAAATTA
*
2613 CGTTTTTTCACCTTTTTTAATAGTG
65 CGTTTTTTCACCTTTTTTAGTAGTG
* * * *
2638 TCATTTATAATAAAATACATTTCCAAACATAAAA-AAACA-TTTTT-GGTATTACATAAAACTAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
* **
2700 GTTACTTT-ACCTTTTTTAGTTTTTG
66 GTT-TTTTCACCTTTTTTAG-TAGTG
** *
2725 TC-TTTCATAATTTAATACATTTCCAAACATAAAATAAAGACTTTTTAAGTATTAAATAAAATTA
1 TCATTT-ATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTA
* *
2789 CG-TTTTTCACATTTTTTAGTAGTA
65 CGTTTTTTCACCTTTTTTAGTAGTG
* * * *
2813 TTATTTATTATAGAATACATTTCCAAACATAAAATAAATATTTTTTAGGTATTATAA-AAAATTA
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTA-AATAAAATTA
*
2877 CGTTTTTTCACCTTTTTTAATAGTG
65 CGTTTTTTCACCTTTTTTAGTAGTG
* * *
2902 TCATTTATAATAGAATACATTTCCAAACAT-AAA-AAA-ACATTTTAGGTATTACATAAAACTAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
* **
2964 GTTACTTT-ACCTTTTTTAGTTTTG
66 GTT-TTTTCACCTTTTTTAGTAGTG
** * *
2988 TC-TTTCATAATTTAATACATTTTCAAACATAAAATAAAGACTTTTTAGGTATTATA-AAAATTA
1 TCATTT-ATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTA
3051 CGTTTTTTCACCTTTTTTAGTAGTG
65 CGTTTTTTCACCTTTTTTAGTAGTG
** * * * * *
3076 TCATCCATAATATAATATATTTCCAAACAT-AAA-AAA-ACATTTTAGGTAATAAATAAAATTCC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
* * *
3138 GTTGCTTT-ACTTTTTTTAGTATTG
66 GTT-TTTTCACCTTTTTTAGTAGTG
* * * * *
3162 TCATTCATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGAAATAAAGAAAATTAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
**
3227 GTTACTTCACCTTTTTTAGTAGTG
66 GTTTTTTCACCTTTTTTAGTAGTG
* * * * **
3251 TTATTTATATTAGAATACATTTACAAACATAAAA-AAATA--TTTTAGGTATTAAATAAAACCAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
* * * *
3313 GTTACTAT-ACCCTTTTTAATAGTG
66 GTT-TTTTCACCTTTTTTAGTAGTG
* * * *
3337 TCATTCATAAAAAAATTA-ATTTCCAAACATATAATAAAGA-TATTTTAGGTATTAAATAAAATT
1 TCATTTATAATAGAA-TACATTTCCAAACATAAAATAAAGACT-TTTTAGGTATTAAATAAAATT
3400 ACGTTTTTTCACCTTTTTTAGTAGTG
64 ACGTTTTTTCACCTTTTTTAGTAGTG
3426 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAA-AAAATTAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
*
3490 GTTTTTTCACCTTTTTTAGTTGTG
66 GTTTTTTCACCTTTTTTAGTAGTG
* * * *
3514 TTATTTATAATAGAATACATTTCCAAAAATAAAA-AAATA--TTTTAGGTATTAAATAAAATCAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
** *
3576 GTTACTTCACCTTTTTTAGTAATG
66 GTTTTTTCACCTTTTTTAGTAGTG
* * *
3600 TCATTCATAAT-GTAATTCATTTCCAAACATAAAATAAAGAC-ATTTAGGTATTAAATAAAATTA
1 TCATTTATAATAG-AATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTA
* * *
3663 TGTTTTTTTACCTTTTTTAGTAGTA
65 CGTTTTTTCACCTTTTTTAGTAGTG
* *
3688 TCATTTATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTATA-AAAATTAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
*
3752 GTTTTTTCACCTTTTTTAATAGTG
66 GTTTTTTCACCTTTTTTAGTAGTG
** * * * * *
3776 TCATCCATAATATAATATATTTCCAAACAT-AAA-AAA-ACATTTTAGGTAATAAATAAAATTCC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
* ** *
3838 GTTGCTTT-ATTTTTTTTAGTATTG
66 GTT-TTTTCACCTTTTTTAGTAGTG
* * * * * *
3862 TCATTCATAATATAATATATTTCCAAACATAAAATAAAGAC-TTTTAGGAAATAAAGAAAATTAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
**
3926 GTTACTTCACCTTTTTTAGTAGTG
66 GTTTTTTCACCTTTTTTAGTAGTG
* * * * **
3950 TTATTTATATTAGAATACATTTACAAACAT-AAA-AAA-ACATTTTAGGTATTAAATAAAACCAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
* * * *
4012 GTTACTAT-ACCCTTTTTAATAGTG
66 GTT-TTTTCACCTTTTTTAGTAGTG
* * *
4036 TCATTAATAAAAAAATTA-ATTTCCAAACATAAAATAAAGA-TATTTTAGGTATTAAATAAAATT
1 TCATTTATAATAGAA-TACATTTCCAAACATAAAATAAAGACT-TTTTAGGTATTAAATAAAATT
*
4099 ACGTTTTTTCACCTTTTTTAGTAGTA
64 ACGTTTTTTCACCTTTTTTAGTAGTG
4125 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAA-AAAATTAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
*
4189 GTTTTTTCACCTTTTTTAGTTGTG
66 GTTTTTTCACCTTTTTTAGTAGTG
* * * * *
4213 TCATTTATAATARAATAMATTTCCAAAAATAAAA-AAAYA--TTTTAGGTATTAAATAAAATCAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
** *
4275 GTTACTTCACCTTTTTTAGTAATG
66 GTTTTTTCACCTTTTTTAGTAGTG
* * * * *
4299 TCATTCATAATATAATTCATTTCCAAACATAAAATAAAGAC-ATTTAGGTATTAAATAAAATTAT
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
*
4363 GTTTTTTCACCTTTTTTAGTAGTA
66 GTTTTTTCACCTTTTTTAGTAGTG
* * *
4387 TCATTTATAATATAATACATTTCCAAACATGAAATAAAGACTTTTTAGGTATTATA-AAAATTAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
*
4451 GTTTTTTCACCTTTTTTAATAGTG
66 GTTTTTTCACCTTTTTTAGTAGTG
** * * * * *
4475 TCATCCATAATATAATATATTTCCAAACAT-AAA-AAA-ACATTTTAGGTAATAAATAAAATTCC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
* * *
4537 GTTGCTTT-ACTTTTTTTAGTATTG
66 GTT-TTTTCACCTTTTTTAGTAGTG
* * * * *
4561 TCATTCATAATATAATATATTTCCAAACATAAAATAAAGACTTTTTAGG-A-AAAAGAAAATTAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
**
4624 GTTACTTCACCTTTTTTAGTAGTG
66 GTTTTTTCACCTTTTTTAGTAGTG
* * * * **
4648 TTATTTATATTAGAATACATTTACAAACAT-AAA-AAA-ACATTTTAGGTATTAAATAAAACCAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
* * * *
4710 GTTACTAT-ACCCTTTTTAATAGTG
66 GTT-TTTTCACCTTTTTTAGTAGTG
* * * *
4734 TCATTCATAAAAAAATTCATTTCCAAACATAAAATAAAGA-TATTTTAGGTATTAAATAAAATTA
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACT-TTTTAGGTATTAAATAAAATTA
4798 CGTTTTTTCACCTTTTTTAGTAGTG
65 CGTTTTTTCACCTTTTTTAGTAGTG
4823 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAA-AAAATTAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
*
4887 GTTTTTTCACCTTTTTTAGTTGTG
66 GTTTTTTCACCTTTTTTAGTAGTG
* * * * *
4911 TCATTTATAATAAAATAAATTTCCAAAAAT-AAA-AAA-ACATTTTAGGTATTAAATAAAATCAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
** *
4973 GTTACTTCACCTTTTTTAGTAATG
66 GTTTTTTCACCTTTTTTAGTAGTG
* * * * *
4997 TCATTCATAATATAATTCATTTCCAAACATAAAATAAAGAC-ATTTAGGTATTAAATAAAATTAT
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
*
5061 GTTTTTTCACCTTTTTTAGTAGTA
66 GTTTTTTCACCTTTTTTAGTAGTG
* *
5085 TCATTTATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTATA-AAAATTAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
*
5149 GTTTTTTCACCTTTTTTAGTAATG
66 GTTTTTTCACCTTTTTTAGTAGTG
** * * * * *
5173 TCATCCATAATATAATATATTTCCAAATAT-AAA-AAA-ACATTTTAGGTAATAAATAAAATT-C
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
* * * *
5234 YGTTGCTTT-ACYTTTTTTAGTATTA
66 -GTT-TTTTCACCTTTTTTAGTAGTG
* * * * * * * *
5259 TCATTCATAATATAATACATTTCCAAACAWAAAATAAAKAYTTTTTAGGAAATAAAGAAAATTAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
**
5324 GTTACTTCACCTTTTTTAGTAGTG
66 GTTTTTTCACCTTTTTTAGTAGTG
* * * * **
5348 TTATTTATATTAGAATACATTTACAAACAT-AAA-AAA-ACATTTTAGGTATTAAATAAAACCAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
* * * *
5410 GTTACTAT-ACCCTTTTTAATAGTG
66 GTT-TTTTCACCTTTTTTAGTAGTG
* * *
5434 TCATTCATAAAAAAATTA-ATTTCCAAACATAAAATAAAGA-TATTTTAGGTATTAAATAAAATT
1 TCATTTATAATAGAA-TACATTTCCAAACATAAAATAAAGACT-TTTTAGGTATTAAATAAAATT
*
5497 ACGTTTTTTCACCTTTTTTAGTAGTA
64 ACGTTTTTTCACCTTTTTTAGTAGTG
5523 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAA-AAAATTAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
5587 GTTTTTTCACCTTTTTTAGT
66 GTTTTTTCACCTTTTTTAGT
Statistics
Matches: 4672, Mismatches: 676, Indels: 336
0.82 0.12 0.06
Matches are distributed among these distances:
84 9 0.00
85 206 0.04
86 1103 0.24
87 423 0.09
88 1359 0.29
89 1482 0.32
90 90 0.02
ACGTcount: A:0.40, C:0.11, G:0.07, T:0.41
Consensus pattern (89 bp):
TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
GTTTTTTCACCTTTTTTAGTAGTG
Found at i:547 original size:263 final size:265
Alignment explanation
Indices: 3--5606 Score: 6263
Period size: 263 Copynumber: 21.3 Consensus size: 265
1 TA
* * *
3 TCATTTATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTATA-AAAATTAC
1 TCATTTATAATAGAATACATTTCCAAACAT-AAA-AAA-ACATTTTAGGTATTAAATAAAATTAC
* * * * *
67 GTT-TTTTCACCTTTTTTAGTAATGTCATCCATAATATAATATATTTCCAAATAT-AAA-AAA-A
63 GTTACTTTCACCTTTTTTAGTAGTGTCATTCATAATATAATACATTTCCAAACATAAAATAAAGA
* * * * * * * * *
128 CATTTTAGGTAATAAATAAAATTCCGTTGCTTT-ACTTTTTTTAGTATTATCATTCATAATATAA
128 TATTTTAGGTATTAAATAAAATTACGTT-TTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAA
* * * * **
192 TACATTTCCAAACAAAAAATAAAGACTTTTTAGGAAATAAAGAAAATTACGTTACTTCACCTTTT
192 TACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTACGTTTTTTCACCTTTT
257 TTAGTAGTG
257 TTAGTAGTG
* * * **
266 TTATTTATATTAGAATACATTTACAAACATAAAAAAACATTTTAGGTATTAAATAAAACCACGTT
1 TCATTTATAATAGAATACATTTCCAAACATAAAAAAACATTTTAGGTATTAAATAAAATTACGTT
* * * * * **
331 ACTAT-ACCCTTTTTAATAGTGTCATTCATAAAAAAATTTATTTCCAAACATAAAATAAAGATAT
66 ACTTTCACCTTTTTTAGTAGTGTCATTCATAATATAATACATTTCCAAACATAAAATAAAGATAT
*
395 TTTAGGTATTAAATAAAATTACGTTTTTTCACCTTTTTTAATAGTGTCATTTATAATAGAATACA
131 TTTAGGTATTAAATAAAATTACGTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACA
*
460 TTTCCAAACATAAAATAATGACTTTTTAGGTATTAAA-AAAATTACGTTTTTTCACCTTTTTTAG
196 TTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTACGTTTTTTCACCTTTTTTAG
*
524 TTGTG
261 TAGTG
* **
529 TCATTTATAATAGAATACATTTCCAAAAATAAAAAAAACATTTTAGGTATTAAATAAAACCACGT
1 TCATTTATAATAGAATACATTTCCAAACAT-AAAAAAACATTTTAGGTATTAAATAAAATTACGT
* * * *
594 TAC-TTCACCTTTTTTAGTAATGTCATTCATAATGTAATTCATTTCCAAACATAAAATAAAGACA
65 TACTTTCACCTTTTTTAGTAGTGTCATTCATAATATAATACATTTCCAAACATAAAATAAAGATA
* *
658 -TTTAGGTATTAAATAAAATTATGTTTTTTTCACCTTTTTTAGTAGTATCATTTATAATAGAATA
130 TTTTAGGTATTAAATAAAATTACG-TTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATA
*
722 CATTTCCAAACATAAAATAAAGACTTTTTAGGTATTATA-AAAATTACGTTTTTTCACCTTTTTT
194 CATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTACGTTTTTTCACCTTTTTT
*
786 AATAGTG
259 AGTAGTG
** * * * * *
793 TCATCCATAATATAATATATTACCAAACATAAAAAAACATTTTAGGTAATAAATAAAATTTCGTT
1 TCATTTATAATAGAATACATTTCCAAACATAAAAAAACATTTTAGGTATTAAATAAAATTACGTT
* * * *
858 GCTTT-ACTTTTTTTAGTATTGTCATTCATAATATAATACATTTCCAAACATAAAATAAAGATTT
66 ACTTTCACCTTTTTTAGTAGTGTCATTCATAATATAATACATTTCCAAACATAAAATAAAGATAT
* * * ** * * *
922 TTTAGGAAATAAAGAAAATTACGTTACTTGACCTTTTTTAGTAGTGTTATTTATATTAGAATACA
131 TTTAGGTATTAAATAAAATTACGTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACA
* * *
987 TTTACAAACAT-AAA-AAA-ACATTTTAGGTATTAAATAAAATTATGTTTTTTTCACCTTTTTTA
196 TTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTACG-TTTTTTCACCTTTTTTA
*
1049 TTAGTG
260 GTAGTG
* * * *
1055 TTATTTATAATATAATACATTT-TAAACATAAAATAAAAACTTTTTAGGTATTAAA-AAAATTTA
1 TCATTTATAATAGAATACATTTCCAAACAT--AA-AAAAACATTTTAGGTATTAAATAAAA-TTA
* * * * * * * *
1118 CCTT-TTTTCACCTTTTTTACTAATGTCATTTATAATAAAATACATTTTCAAATATAAAATAAAG
62 CGTTACTTTCACCTTTTTTAGTAGTGTCATTCATAATATAATACATTTCCAAACATAAAATAAAG
* * * *
1182 ACT-TTTTAAGTATTATA-AAAATTACGTTTTTTTTACTTTTTTTAGTAGTGTCATTTATAATAG
127 A-TATTTTAGGTATTAAATAAAATTACG-TTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAG
* * *
1245 AATACATTTTCAAACATAAAATAAAGACTTTTTAGGTATTAAA-AAAATTACGTTTTTTTACATT
190 AATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTACGTTTTTTCACCTT
1309 TTTTAGTAGTG
255 TTTTAGTAGTG
* * * **
1320 CCATTTATATTAGAATACATTTCCAAACATAAAAAAACATTTTAAGTATTAAATAAAACCACGTT
1 TCATTTATAATAGAATACATTTCCAAACATAAAAAAACATTTTAGGTATTAAATAAAATTACGTT
* * *
1385 ACTTT-ACCTTTTTTAGTAGTGTCATTCATAATAAAATTCATTTCCAAACATAAAATAAAGACAT
66 ACTTTCACCTTTTTTAGTAGTGTCATTCATAATATAATACATTTCCAAACATAAAATAAAGATAT
* *
1449 TTTAGGTATTAAATAAAATTACGTTTTTTCACTTTTTTTAATAGTGTCATTTATAATAGAATACA
131 TTTAGGTATTAAATAAAATTACGTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACA
* * * * *
1514 TTTCCAAACATAAAAGAAAAACTTTTTAGGTATTAAAAAAAATTACGGTTTTTCACCTTTTTTAC
196 TTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTACGTTTTTTCACCTTTTTTAG
*
1579 TAGTA
261 TAGTG
* * * * *
1584 TTATTTATAATAGAATAAATTTCCAAACATAAAAGAAAAATTTTTTAGGTATTAAAAAAAATTAT
1 TCATTTATAATAGAATACATTTCCAAACATAAAA-AAACA--TTTTAGGTATTAAATAAAATTAC
* * * * ** * * *
1649 ATT-TTTTCACCTTTTTTAGTAATGTTATTTTTAATAGAATACATCTCTAAACATAAAATAAAGA
63 GTTACTTTCACCTTTTTTAGTAGTGTCATTCATAATATAATACATTTCCAAACATAAAATAAAGA
* * *
1713 TATTTTAGGTATTAAA-AAAATTACGTTTTTTCACCTTTTTTAATAGTGTAATTTATATTAGAAT
128 TATTTTAGGTATTAAATAAAATTACGTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAAT
* * * ** *
1777 ACATTTTCAAATAT-AAA-AAAG-CATTTTAGGTATTAAATAAAACCAC-TTTACTTT-ATCTTT
193 ACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTACGTTT--TTTCACCTTT
*
1837 TTTAATAGTG
256 TTTAGTAGTG
* * *
1847 TCATTCATAATAAAATTCATTTCCAAACATAAAAGAAA-ATTTTTTTAGGTATTAAA-AAAATTA
1 TCATTTATAATAGAATACATTTCCAAACATAAAA-AAACA---TTTTAGGTATTAAATAAAATTA
** * * ** * **
1910 TATT--TTTCACCTTTTTTAGTAATGTTATTTTTAATAGAATACATTTTTAAACATAAAATAAAG
62 CGTTACTTTCACCTTTTTTAGTAGTGTCATTCATAATATAATACATTTCCAAACATAAAATAAAG
* * * *
1973 ATATTTTAGGTATTAAA-AAAATTACGCTTTTTCACCTTTTTTAATAGTGTAATTTATATTAGAA
127 ATATTTTAGGTATTAAATAAAATTACGTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAA
* * * ** *
2037 TACATTTTCAAATAT-AAA-AAAG-CATTTTAGGTATTAAATAAAACCAC-TTTACTTT-ATCTT
192 TACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTACGTTT--TTTCACCTT
2097 TTTTAGTAGTG
255 TTTTAGTAGTG
* * *
2108 TCATTCATAATAAAATTCATTTCCAAACATAAAATAAAGACATTTTAGGTATTAAATAAAATTAC
1 TCATTTATAATAGAATACATTTCCAAACAT-AAA-AAA-ACATTTTAGGTATTAAATAAAATTAC
* * * * * * *
2173 GTT-TTTTCACCTTTTTTATTAGTGTCATTTATAATAGAATACATTTTCAAATATAAAAGAAA-A
63 GTTACTTTCACCTTTTTTAGTAGTGTCATTCATAATATAATACATTTCCAAACATAAAATAAAGA
* * * * * *
2236 AATTTTTAGGTATTAAAAAAAATTACATTTTTTCACCTTTTTTACTAGTGTCATTTATAATATAC
128 TA-TTTTAGGTATTAAATAAAATTACGTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAA
* * * *
2301 TACATTTTCAAACATATAATAAAGACTTTTTAGGTATTATA-AAAATTACGTTTTTTCACTTTTT
192 TACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTACGTTTTTTCACCTTTT
2365 TTAGTAGTG
257 TTAGTAGTG
*
2374 TCATTTATAATAGAATACATTTCCAAACATAAAAAAACATTTTAGGTATTAAATAAAACTACGTT
1 TCATTTATAATAGAATACATTTCCAAACATAAAAAAACATTTTAGGTATTAAATAAAATTACGTT
* * *
2439 ACTTT-ACCTTTTTTAGTTGTGTCTTTCATAATTTAATACATTTCCAAACATAAAATAAAGACT-
66 ACTTTCACCTTTTTTAGTAGTGTCATTCATAATATAATACATTTCCAAACATAAAATAAAGA-TA
* *
2502 TTTTAGGTATTAAATAAAATTACG-TTTTTCACCTTTTTTAGTAGTATTATTTATAATAGAATAC
130 TTTTAGGTATTAAATAAAATTACGTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATAC
* *
2566 ATTTCCAAACATAAAATAAATACTTTTTAGGTATTATAAAAAAATTACGTTTTTTCACCTTTTTT
195 ATTTCCAAACATAAAATAAAGACTTTTTAGGTATTA-AATAAAATTACGTTTTTTCACCTTTTTT
*
2631 AATAGTG
259 AGTAGTG
* * * *
2638 TCATTTATAATAAAATACATTTCCAAACATAAAAAAACATTTTTGGTATTACATAAAACTACGTT
1 TCATTTATAATAGAATACATTTCCAAACATAAAAAAACATTTTAGGTATTAAATAAAATTACGTT
** * *
2703 ACTTT-ACCTTTTTTAGTTTTTGTCTTTCATAATTTAATACATTTCCAAACATAAAATAAAGACT
66 ACTTTCACCTTTTTTAG-TAGTGTCATTCATAATATAATACATTTCCAAACATAAAATAAAGA-T
* * * * *
2767 -TTTTAAGTATTAAATAAAATTACG-TTTTTCACATTTTTTAGTAGTATTATTTATTATAGAATA
129 ATTTTAGGTATTAAATAAAATTACGTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATA
* *
2830 CATTTCCAAACATAAAATAAATATTTTTTAGGTATTATAA-AAAATTACGTTTTTTCACCTTTTT
194 CATTTCCAAACATAAAATAAAGACTTTTTAGGTATTA-AATAAAATTACGTTTTTTCACCTTTTT
*
2894 TAATAGTG
258 TAGTAGTG
* *
2902 TCATTTATAATAGAATACATTTCCAAACATAAAAAAACATTTTAGGTATTACATAAAACTACGTT
1 TCATTTATAATAGAATACATTTCCAAACATAAAAAAACATTTTAGGTATTAAATAAAATTACGTT
** * * *
2967 ACTTT-ACCTTTTTTAGTTTTGTCTTTCATAATTTAATACATTTTCAAACATAAAATAAAGACT-
66 ACTTTCACCTTTTTTAGTAGTGTCATTCATAATATAATACATTTCCAAACATAAAATAAAGA-TA
* ** * *
3030 TTTTAGGTATTATA-AAAATTACGTTTTTTCACCTTTTTTAGTAGTGTCATCCATAATATAATAT
130 TTTTAGGTATTAAATAAAATTACGTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATAC
* * * * *
3094 ATTTCCAAACAT-AAA-AAA-ACATTTTAGGTAATAAATAAAATTCCGTTGCTTT-ACTTTTTTT
195 ATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTACGTT-TTTTCACCTTTTTT
*
3155 AGTATTG
259 AGTAGTG
* * * * * *
3162 TCATTCATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGAAATAAAGAAAATTAC
1 TCATTTATAATAGAATACATTTCCAAACAT-AAA-AAA-ACATTTTAGGTATTAAATAAAATTAC
* * * * *
3227 GTTAC-TTCACCTTTTTTAGTAGTGTTATTTATATTAGAATACATTTACAAACAT-AAA-AAA-A
63 GTTACTTTCACCTTTTTTAGTAGTGTCATTCATAATATAATACATTTCCAAACATAAAATAAAGA
** * * * * * * *
3288 TATTTTAGGTATTAAATAAAACCACGTTACTAT-ACCCTTTTTAATAGTGTCATTCATAAAAAAA
128 TATTTTAGGTATTAAATAAAATTACGTT-TTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAA
*
3352 TTA-ATTTCCAAACATATAATAAAGA-TATTTTAGGTATTAAATAAAATTACGTTTTTTCACCTT
192 -TACATTTCCAAACATAAAATAAAGACT-TTTTAGGTATTAAATAAAATTACGTTTTTTCACCTT
3415 TTTTAGTAGTG
255 TTTTAGTAGTG
*
3426 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAA-AAAATTAC
1 TCATTTATAATAGAATACATTTCCAAACAT-AAA-AAA-ACATTTTAGGTATTAAATAAAATTAC
* * * * * *
3490 GTT-TTTTCACCTTTTTTAGTTGTGTTATTTATAATAGAATACATTTCCAAAAAT-AAA-AAA-A
63 GTTACTTTCACCTTTTTTAGTAGTGTCATTCATAATATAATACATTTCCAAACATAAAATAAAGA
* ** * *
3551 TATTTTAGGTATTAAATAAAATCACGTTACTTCACCTTTTTTAGTAATGTCATTCATAAT-GTAA
128 TATTTTAGGTATTAAATAAAATTACGTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAG-AA
* * * *
3615 TTCATTTCCAAACATAAAATAAAGAC-ATTTAGGTATTAAATAAAATTATGTTTTTTTACCTTTT
192 TACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTACGTTTTTTCACCTTTT
*
3679 TTAGTAGTA
257 TTAGTAGTG
* * *
3688 TCATTTATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTATA-AAAATTAC
1 TCATTTATAATAGAATACATTTCCAAACAT-AAA-AAA-ACATTTTAGGTATTAAATAAAATTAC
* * * *
3752 GTT-TTTTCACCTTTTTTAATAGTGTCATCCATAATATAATATATTTCCAAACAT-AAA-AAA-A
63 GTTACTTTCACCTTTTTTAGTAGTGTCATTCATAATATAATACATTTCCAAACATAAAATAAAGA
* * * * ** * * *
3813 CATTTTAGGTAATAAATAAAATTCCGTTGCTTT-ATTTTTTTTAGTATTGTCATTCATAATATAA
128 TATTTTAGGTATTAAATAAAATTACGTT-TTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAA
* * * * **
3877 TATATTTCCAAACATAAAATAAAGAC-TTTTAGGAAATAAAGAAAATTACGTTACTTCACCTTTT
192 TACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTACGTTTTTTCACCTTTT
3941 TTAGTAGTG
257 TTAGTAGTG
* * * **
3950 TTATTTATATTAGAATACATTTACAAACATAAAAAAACATTTTAGGTATTAAATAAAACCACGTT
1 TCATTTATAATAGAATACATTTCCAAACATAAAAAAACATTTTAGGTATTAAATAAAATTACGTT
* * * * * *
4015 ACTAT-ACCCTTTTTAATAGTGTCATTAATAAAAAAATTA-ATTTCCAAACATAAAATAAAGATA
66 ACTTTCACCTTTTTTAGTAGTGTCATTCATAATATAA-TACATTTCCAAACATAAAATAAAGATA
*
4078 TTTTAGGTATTAAATAAAATTACGTTTTTTCACCTTTTTTAGTAGTATCATTTATAATAGAATAC
130 TTTTAGGTATTAAATAAAATTACGTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATAC
4143 ATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAA-AAAATTACGTTTTTTCACCTTTTTTA
195 ATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTACGTTTTTTCACCTTTTTTA
*
4207 GTTGTG
260 GTAGTG
* * * * *
4213 TCATTTATAATARAATAMATTTCCAAAAATAAAAAAAYATTTTAGGTATTAAATAAAATCACGTT
1 TCATTTATAATAGAATACATTTCCAAACATAAAAAAACATTTTAGGTATTAAATAAAATTACGTT
* * *
4278 AC-TTCACCTTTTTTAGTAATGTCATTCATAATATAATTCATTTCCAAACATAAAATAAAGACA-
66 ACTTTCACCTTTTTTAGTAGTGTCATTCATAATATAATACATTTCCAAACATAAAATAAAGATAT
* * *
4341 TTTAGGTATTAAATAAAATTATGTTTTTTCACCTTTTTTAGTAGTATCATTTATAATATAATACA
131 TTTAGGTATTAAATAAAATTACGTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACA
* * *
4406 TTTCCAAACATGAAATAAAGACTTTTTAGGTATTATA-AAAATTACGTTTTTTCACCTTTTTTAA
196 TTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTACGTTTTTTCACCTTTTTTAG
4470 TAGTG
261 TAGTG
** * * * *
4475 TCATCCATAATATAATATATTTCCAAACATAAAAAAACATTTTAGGTAATAAATAAAATTCCGTT
1 TCATTTATAATAGAATACATTTCCAAACATAAAAAAACATTTTAGGTATTAAATAAAATTACGTT
* * * *
4540 GCTTT-ACTTTTTTTAGTATTGTCATTCATAATATAATATATTTCCAAACATAAAATAAAGACT-
66 ACTTTCACCTTTTTTAGTAGTGTCATTCATAATATAATACATTTCCAAACATAAAATAAAGA-TA
* * ** * *
4603 TTTTAGG-A-AAAAGAAAATTACGTTACTTCACCTTTTTTAGTAGTGTTATTTATATTAGAATAC
130 TTTTAGGTATTAAATAAAATTACGTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATAC
* * ** * * *
4666 ATTTACAAACAT-AAA-AAA-ACATTTTAGGTATTAAATAAAACCACGTTACTAT-ACCCTTTTT
195 ATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTACGTT-TTTTCACCTTTTTT
*
4727 AATAGTG
259 AGTAGTG
* * * * *
4734 TCATTCATAAAAAAATTCATTTCCAAACATAAAATAAAGATATTTTAGGTATTAAATAAAATTAC
1 TCATTTATAATAGAATACATTTCCAAACAT-AAA-AAA-ACATTTTAGGTATTAAATAAAATTAC
* * *
4799 GTT-TTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACATTTCCAAACATAAAATAAAGA
63 GTTACTTTCACCTTTTTTAGTAGTGTCATTCATAATATAATACATTTCCAAACATAAAATAAAGA
* *
4863 CT-TTTTAGGTATTAAA-AAAATTACGTTTTTTCACCTTTTTTAGTTGTGTCATTTATAATAAAA
128 -TATTTTAGGTATTAAATAAAATTACGTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAA
* * * * **
4926 TAAATTTCCAAAAAT-AAA-AAA-ACATTTTAGGTATTAAATAAAATCACGTTACTTCACCTTTT
192 TACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTACGTTTTTTCACCTTTT
*
4988 TTAGTAATG
257 TTAGTAGTG
* * * *
4997 TCATTCATAATATAATTCATTTCCAAACATAAAATAAAGACA-TTTAGGTATTAAATAAAATTAT
1 TCATTTATAATAGAATACATTTCCAAACAT-AAA-AAA-ACATTTTAGGTATTAAATAAAATTAC
* * *
5061 GTT-TTTTCACCTTTTTTAGTAGTATCATTTATAATATAATACATTTCCAAACATAAAATAAAGA
63 GTTACTTTCACCTTTTTTAGTAGTGTCATTCATAATATAATACATTTCCAAACATAAAATAAAGA
* * ** *
5125 CT-TTTTAGGTATTATA-AAAATTACGTTTTTTCACCTTTTTTAGTAATGTCATCCATAATATAA
128 -TATTTTAGGTATTAAATAAAATTACGTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAA
* * * * * *
5188 TATATTTCCAAATAT-AAA-AAA-ACATTTTAGGTAATAAATAAAATT-CYGTTGCTTT-ACYTT
192 TACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC-GTT-TTTTCACCTT
* *
5248 TTTTAGTATTA
255 TTTTAGTAGTG
* * * * * * *
5259 TCATTCATAATATAATACATTTCCAAACAWAAAATAAAKAYTTTTTAGGAAATAAAGAAAATTAC
1 TCATTTATAATAGAATACATTTCCAAACATAAAA-AAACA--TTTTAGGTATTAAATAAAATTAC
* * * * *
5324 GTTAC-TTCACCTTTTTTAGTAGTGTTATTTATATTAGAATACATTTACAAACAT-AAA-AAA-A
63 GTTACTTTCACCTTTTTTAGTAGTGTCATTCATAATATAATACATTTCCAAACATAAAATAAAGA
* ** * * * * * * *
5385 CATTTTAGGTATTAAATAAAACCACGTTACTAT-ACCCTTTTTAATAGTGTCATTCATAAAAAAA
128 TATTTTAGGTATTAAATAAAATTACGTT-TTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAA
5449 TTA-ATTTCCAAACATAAAATAAAGA-TATTTTAGGTATTAAATAAAATTACGTTTTTTCACCTT
192 -TACATTTCCAAACATAAAATAAAGACT-TTTTAGGTATTAAATAAAATTACGTTTTTTCACCTT
*
5512 TTTTAGTAGTA
255 TTTTAGTAGTG
*
5523 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAA-AAAATTAC
1 TCATTTATAATAGAATACATTTCCAAACAT-AAA-AAA-ACATTTTAGGTATTAAATAAAATTAC
*
5587 GTT-TTTTCACCTTTTTTAGT
63 GTTACTTTCACCTTTTTTAGT
Statistics
Matches: 4677, Mismatches: 543, Indels: 242
0.86 0.10 0.04
Matches are distributed among these distances:
258 15 0.00
259 70 0.01
260 182 0.04
261 487 0.10
262 1040 0.22
263 1430 0.31
264 999 0.21
265 208 0.04
266 130 0.03
267 116 0.02
ACGTcount: A:0.40, C:0.11, G:0.07, T:0.41
Consensus pattern (265 bp):
TCATTTATAATAGAATACATTTCCAAACATAAAAAAACATTTTAGGTATTAAATAAAATTACGTT
ACTTTCACCTTTTTTAGTAGTGTCATTCATAATATAATACATTTCCAAACATAAAATAAAGATAT
TTTAGGTATTAAATAAAATTACGTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACA
TTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTACGTTTTTTCACCTTTTTTAG
TAGTG
Found at i:907 original size:174 final size:174
Alignment explanation
Indices: 3--5606 Score: 6365
Period size: 174 Copynumber: 32.0 Consensus size: 174
1 TA
*
3 TCATTTATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTATA-AAAATTAC
1 TCATTTATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
* ** * * *
67 GTTTTTTCACCTTTTTTAGTAATGTCATCCATAATATAATATATTTCCAAATATAAAAAAACATT
66 GTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACATTTCCAAACATAAAAAAACATT
* * * * *
132 TTAGGTAATAAATAAAATTCCGTTGCTTTACTTTTTTTAGTATTA
131 TTAGGTATTAAATAAAATTACGTT-CTTTACCTTTTTTAGTAGTG
* * * * *
177 TCATTCATAATATAATACATTTCCAAACAAAAAATAAAGACTTTTTAGGAAATAAAGAAAATTAC
1 TCATTTATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
** * * *
242 GTTACTTCACCTTTTTTAGTAGTGTTATTTATATTAGAATACATTTACAAACATAAAAAAACATT
66 GTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACATTTCCAAACATAAAAAAACATT
** * * *
307 TTAGGTATTAAATAAAACCACGTTACTATACCCTTTTTAATAGTG
131 TTAGGTATTAAATAAAATTACGTT-CTTTACCTTTTTTAGTAGTG
* * * **
352 TCATTCATAAAAAAATTTATTTCCAAACATAAAATAAAGA-TATTTTAGGTATTAAATAAAATTA
1 TCATTTATAATATAATACATTTCCAAACATAAAATAAAGACT-TTTTAGGTATTAAATAAAATTA
*
416 CGTTTTTTCACCTTTTTTAATAGTGTCATTTATAATAGAATACATTTCCAAACATAAAATAATGA
65 CGTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACATTTCCAAACATAAAA-AA--A
* * *
481 CTTTTTAGGTATTAAA-AAAATTACGTTTTTTCACCTTTTTTAGTTGTG
127 CATTTTAGGTATTAAATAAAATTACGTTCTTT-ACCTTTTTTAGTAGTG
* * * **
529 TCATTTATAATAGAATACATTTCCAAAAATAAAA-AAA-ACATTTTAGGTATTAAATAAAACCAC
1 TCATTTATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
** * * *
592 GTTACTTCACCTTTTTTAGTAATGTCATTCATAAT-GTAATTCATTTCCAAACATAAAATAAAGA
66 GTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAG-AATACATTTCCAAACAT-AAA-AAA-A
* * *
656 CA-TTTAGGTATTAAATAAAATTATGTTTTTTTCACCTTTTTTAGTAGTA
127 CATTTTAGGTATTAAATAAAATTACG-TTCTTT-ACCTTTTTTAGTAGTG
* *
705 TCATTTATAATAGAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTATA-AAAATTAC
1 TCATTTATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
* ** * * *
769 GTTTTTTCACCTTTTTTAATAGTGTCATCCATAATATAATATATTACCAAACATAAAAAAACATT
66 GTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACATTTCCAAACATAAAAAAACATT
* * * *
834 TTAGGTAATAAATAAAATTTCGTTGCTTTACTTTTTTTAGTATTG
131 TTAGGTATTAAATAAAATTACGTT-CTTTACCTTTTTTAGTAGTG
* * * * *
879 TCATTCATAATATAATACATTTCCAAACATAAAATAAAGATTTTTTAGGAAATAAAGAAAATTAC
1 TCATTTATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
** * * * *
944 GTTACTTGACCTTTTTTAGTAGTGTTATTTATATTAGAATACATTTACAAACATAAAAAAACATT
66 GTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACATTTCCAAACATAAAAAAACATT
* * *
1009 TTAGGTATTAAATAAAATTATGTTTTTTTCACCTTTTTTATTAGTG
131 TTAGGTATTAAATAAAATTACG-TTCTTT-ACCTTTTTTAGTAGTG
* * *
1055 TTATTTATAATATAATACATTT-TAAACATAAAATAAAAACTTTTTAGGTATTAAA-AAAATTTA
1 TCATTTATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAA-TTA
* * * * * *
1118 CCTTTTTTCACCTTTTTTACTAATGTCATTTATAATAAAATACATTTTCAAATATAAAATAAAGA
65 CGTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACATTTCCAAACAT-AAA-AAA-A
* * * * *
1183 CTTTTTAAGTATTATA-AAAATTACGTTTTTTTTACTTTTTTTAGTAGTG
127 CATTTTAGGTATTAAATAAAATTACG--TTCTTTACCTTTTTTAGTAGTG
* *
1232 TCATTTATAATAGAATACATTTTCAAACATAAAATAAAGACTTTTTAGGTATTAAA-AAAATTAC
1 TCATTTATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
* * * *
1296 GTTTTTTTACATTTTTTAGTAGTGCCATTTATATTAGAATACATTTCCAAACATAAAAAAACATT
66 GTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACATTTCCAAACATAAAAAAACATT
* **
1361 TTAAGTATTAAATAAAACCACGTTACTTTACCTTTTTTAGTAGTG
131 TTAGGTATTAAATAAAATTACGTT-CTTTACCTTTTTTAGTAGTG
* * * *
1406 TCATTCATAATAAAATTCATTTCCAAACATAAAATAAAGACATTTTAGGTATTAAATAAAATTAC
1 TCATTTATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
* *
1471 GTTTTTTCACTTTTTTTAATAGTGTCATTTATAATAGAATACATTTCCAAACATAAAAGAAAAAC
66 GTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACATTTCCAAACAT--AA-AAAAAC
* * * *
1536 TTTTTAGGTATTAAAAAAAATTACGGTT-TTTCACCTTTTTTACTAGTA
128 ATTTTAGGTATTAAATAAAATTAC-GTTCTTT-ACCTTTTTTAGTAGTG
* * * * * * * *
1584 TTATTTATAATAGAATAAATTTCCAAACATAAAAGAAAAATTTTTTAGGTATTAAAAAAAATTAT
1 TCATTTATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
* * * * * * *
1649 ATTTTTTCACCTTTTTTAGTAATGTTATTTTTAATAGAATACATCTCTAAACATAAAATAAAGAT
66 GTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACATTTCCAAACAT-AAA-AAA-AC
* *
1714 ATTTTAGGTATTAAA-AAAATTACGTTTTTTCACCTTTTTTAATAGTG
128 ATTTTAGGTATTAAATAAAATTACGTTCTTT-ACCTTTTTTAGTAGTG
* * * * * * **
1761 TAATTTATATTAGAATACATTTTCAAATAT-AAA-AAAG-CATTTTAGGTATTAAATAAAACCAC
1 TCATTTATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
* * * * *
1823 -TTTACTTT-ATCTTTTTTAATAGTGTCATTCATAATAAAATTCATTTCCAAACATAAAAGAAA-
66 GTTT--TTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACATTTCCAAACATAAAA-AAAC
** *
1885 ATTTTTTTAGGTATTAAA-AAAATTATATT-TTTCACCTTTTTTAGTAATG
128 A---TTTTAGGTATTAAATAAAATTACGTTCTTT-ACCTTTTTTAGTAGTG
* * * **
1934 TTATTTTTAATAGAATACATTTTTAAACATAAAATAAAGA-TATTTTAGGTATTAAA-AAAATTA
1 TCATTTATAATATAATACATTTCCAAACATAAAATAAAGACT-TTTTAGGTATTAAATAAAATTA
* * * * * * *
1997 CGCTTTTTCACCTTTTTTAATAGTGTAATTTATATTAGAATACATTTTCAAATATAAAAAAGCAT
65 CGTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACATTTCCAAACATAAAAAAACAT
** * *
2062 TTTAGGTATTAAATAAAACCACTTTACTTTATCTTTTTTAGTAGTG
130 TTTAGGTATTAAATAAAATTACGTT-CTTTACCTTTTTTAGTAGTG
* * * *
2108 TCATTCATAATAAAATTCATTTCCAAACATAAAATAAAGACATTTTAGGTATTAAATAAAATTAC
1 TCATTTATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
* * * *
2173 GTTTTTTCACCTTTTTTATTAGTGTCATTTATAATAGAATACATTTTCAAATATAAAAGAAAAAA
66 GTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACATTTCCAAACAT-AAA-AAAACA
* * * *
2238 TTTTTAGGTATTAAAAAAAATTACATTTTTTCACCTTTTTTACTAGTG
129 -TTTTAGGTATTAAATAAAATTACGTTCTTT-ACCTTTTTTAGTAGTG
* * * *
2286 TCATTTATAATATACTACATTTTCAAACATATAATAAAGACTTTTTAGGTATTATA-AAAATTAC
1 TCATTTATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
*
2350 GTTTTTTCACTTTTTTTAGTAGTGTCATTTATAATAGAATACATTTCCAAACATAAAAAAACATT
66 GTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACATTTCCAAACATAAAAAAACATT
* *
2415 TTAGGTATTAAATAAAACTACGTTACTTTACCTTTTTTAGTTGTG
131 TTAGGTATTAAATAAAATTACGTT-CTTTACCTTTTTTAGTAGTG
*
2460 TC-TTTCATAATTTAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTA
1 TCATTT-ATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTA
* *
2524 CG-TTTTTCACCTTTTTTAGTAGTATTATTTATAATAGAATACATTTCCAAACATAAAATAAATA
65 CGTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACATTTCCAAACAT-AAA-AAA-A
* * * *
2588 CTTTTTAGGTATTATAAAAAAATTACGTTTTTTCACCTTTTTTAATAGTG
127 CATTTTAGGTATTA-AATAAAATTACGTTCTTT-ACCTTTTTTAGTAGTG
* * * *
2638 TCATTTATAATAAAATACATTTCCAAACATAAAA-AAACA-TTTTT-GGTATTACATAAAACTAC
1 TCATTTATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
* ** **
2700 GTTACTTT-ACCTTTTTTAGTTTTTGTC-TTTCATAATTTAATACATTTCCAAACATAAAATAAA
66 GTT-TTTTCACCTTTTTTAG-TAGTGTCATTT-ATAATAGAATACATTTCCAAACAT-AAA-AAA
* * * *
2763 GACTTTTTAAGTATTAAATAAAATTACGTT-TTTCACATTTTTTAGTAGTA
126 -ACATTTTAGGTATTAAATAAAATTACGTTCTTT-ACCTTTTTTAGTAGTG
* * * * *
2813 TTATTTATTATAGAATACATTTCCAAACATAAAATAAATATTTTTTAGGTATTATAA-AAAATTA
1 TCATTTATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTA-AATAAAATTA
*
2877 CGTTTTTTCACCTTTTTTAATAGTGTCATTTATAATAGAATACATTTCCAAACATAAAAAAACAT
65 CGTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACATTTCCAAACATAAAAAAACAT
* * **
2942 TTTAGGTATTACATAAAACTACGTTACTTTACCTTTTTTAGTTTTG
130 TTTAGGTATTAAATAAAATTACGTT-CTTTACCTTTTTTAGTAGTG
* * *
2988 TC-TTTCATAATTTAATACATTTTCAAACATAAAATAAAGACTTTTTAGGTATTATA-AAAATTA
1 TCATTT-ATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTA
** * *
3051 CGTTTTTTCACCTTTTTTAGTAGTGTCATCCATAATATAATATATTTCCAAACATAAAAAAACAT
65 CGTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACATTTCCAAACATAAAAAAACAT
* * * *
3116 TTTAGGTAATAAATAAAATTCCGTTGCTTTACTTTTTTTAGTATTG
130 TTTAGGTATTAAATAAAATTACGTT-CTTTACCTTTTTTAGTAGTG
* * * *
3162 TCATTCATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGAAATAAAGAAAATTAC
1 TCATTTATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
** * * * *
3227 GTTACTTCACCTTTTTTAGTAGTGTTATTTATATTAGAATACATTTACAAACATAAAAAAATATT
66 GTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACATTTCCAAACATAAAAAAACATT
** * * *
3292 TTAGGTATTAAATAAAACCACGTTACTATACCCTTTTTAATAGTG
131 TTAGGTATTAAATAAAATTACGTT-CTTTACCTTTTTTAGTAGTG
* * * *
3337 TCATTCATAAAAAAATTA-ATTTCCAAACATATAATAAAGA-TATTTTAGGTATTAAATAAAATT
1 TCATTTATAATATAA-TACATTTCCAAACATAAAATAAAGACT-TTTTAGGTATTAAATAAAATT
3400 ACGTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACATTTCCAAACATAAAATAAAG
64 ACGTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACATTTCCAAACAT-AAA-AAA-
* * *
3465 ACTTTTTAGGTATTAAA-AAAATTACGTTTTTTCACCTTTTTTAGTTGTG
126 ACATTTTAGGTATTAAATAAAATTACGTTCTTT-ACCTTTTTTAGTAGTG
* * * * *
3514 TTATTTATAATAGAATACATTTCCAAAAATAAAA-AAATA--TTTTAGGTATTAAATAAAATCAC
1 TCATTTATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
** * * *
3576 GTTACTTCACCTTTTTTAGTAATGTCATTCATAAT-GTAATTCATTTCCAAACATAAAATAAAGA
66 GTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAG-AATACATTTCCAAACAT-AAA-AAA-A
* * *
3640 CA-TTTAGGTATTAAATAAAATTATGTTTTTTTACCTTTTTTAGTAGTA
127 CATTTTAGGTATTAAATAAAATTACG-TTCTTTACCTTTTTTAGTAGTG
*
3688 TCATTTATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTATA-AAAATTAC
1 TCATTTATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
* ** * *
3752 GTTTTTTCACCTTTTTTAATAGTGTCATCCATAATATAATATATTTCCAAACATAAAAAAACATT
66 GTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACATTTCCAAACATAAAAAAACATT
* * ** *
3817 TTAGGTAATAAATAAAATTCCGTTGCTTTATTTTTTTTAGTATTG
131 TTAGGTATTAAATAAAATTACGTT-CTTTACCTTTTTTAGTAGTG
* * * * *
3862 TCATTCATAATATAATATATTTCCAAACATAAAATAAAGAC-TTTTAGGAAATAAAGAAAATTAC
1 TCATTTATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
** * * *
3926 GTTACTTCACCTTTTTTAGTAGTGTTATTTATATTAGAATACATTTACAAACATAAAAAAACATT
66 GTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACATTTCCAAACATAAAAAAACATT
** * * *
3991 TTAGGTATTAAATAAAACCACGTTACTATACCCTTTTTAATAGTG
131 TTAGGTATTAAATAAAATTACGTT-CTTTACCTTTTTTAGTAGTG
* * *
4036 TCATTAATAAAAAAATTA-ATTTCCAAACATAAAATAAAGA-TATTTTAGGTATTAAATAAAATT
1 TCATTTATAATATAA-TACATTTCCAAACATAAAATAAAGACT-TTTTAGGTATTAAATAAAATT
*
4099 ACGTTTTTTCACCTTTTTTAGTAGTATCATTTATAATAGAATACATTTCCAAACATAAAATAAAG
64 ACGTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACATTTCCAAACAT-AAA-AAA-
* * *
4164 ACTTTTTAGGTATTAAA-AAAATTACGTTTTTTCACCTTTTTTAGTTGTG
126 ACATTTTAGGTATTAAATAAAATTACGTTCTTT-ACCTTTTTTAGTAGTG
* * * * *
4213 TCATTTATAATARAATAMATTTCCAAAAATAAAA-AAAYA--TTTTAGGTATTAAATAAAATCAC
1 TCATTTATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
** * * * *
4275 GTTACTTCACCTTTTTTAGTAATGTCATTCATAATATAATTCATTTCCAAACATAAAATAAAGAC
66 GTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACATTTCCAAACAT-AAA-AAA-AC
* * *
4340 A-TTTAGGTATTAAATAAAATTATGTTTTTTCACCTTTTTTAGTAGTA
128 ATTTTAGGTATTAAATAAAATTACGTTCTTT-ACCTTTTTTAGTAGTG
* *
4387 TCATTTATAATATAATACATTTCCAAACATGAAATAAAGACTTTTTAGGTATTATA-AAAATTAC
1 TCATTTATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
* ** * *
4451 GTTTTTTCACCTTTTTTAATAGTGTCATCCATAATATAATATATTTCCAAACATAAAAAAACATT
66 GTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACATTTCCAAACATAAAAAAACATT
* * * *
4516 TTAGGTAATAAATAAAATTCCGTTGCTTTACTTTTTTTAGTATTG
131 TTAGGTATTAAATAAAATTACGTT-CTTTACCTTTTTTAGTAGTG
* * * *
4561 TCATTCATAATATAATATATTTCCAAACATAAAATAAAGACTTTTTAGG-A-AAAAGAAAATTAC
1 TCATTTATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
** * * *
4624 GTTACTTCACCTTTTTTAGTAGTGTTATTTATATTAGAATACATTTACAAACATAAAAAAACATT
66 GTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACATTTCCAAACATAAAAAAACATT
** * * *
4689 TTAGGTATTAAATAAAACCACGTTACTATACCCTTTTTAATAGTG
131 TTAGGTATTAAATAAAATTACGTT-CTTTACCTTTTTTAGTAGTG
* * * *
4734 TCATTCATAAAAAAATTCATTTCCAAACATAAAATAAAGA-TATTTTAGGTATTAAATAAAATTA
1 TCATTTATAATATAATACATTTCCAAACATAAAATAAAGACT-TTTTAGGTATTAAATAAAATTA
4798 CGTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACATTTCCAAACATAAAATAAAGA
65 CGTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACATTTCCAAACAT-AAA-AAA-A
* * *
4863 CTTTTTAGGTATTAAA-AAAATTACGTTTTTTCACCTTTTTTAGTTGTG
127 CATTTTAGGTATTAAATAAAATTACGTTCTTT-ACCTTTTTTAGTAGTG
* * * * *
4911 TCATTTATAATAAAATAAATTTCCAAAAAT-AAA-AAA-ACATTTTAGGTATTAAATAAAATCAC
1 TCATTTATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
** * * * *
4973 GTTACTTCACCTTTTTTAGTAATGTCATTCATAATATAATTCATTTCCAAACATAAAATAAAGAC
66 GTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACATTTCCAAACAT-AAA-AAA-AC
* * *
5038 A-TTTAGGTATTAAATAAAATTATGTTTTTTCACCTTTTTTAGTAGTA
128 ATTTTAGGTATTAAATAAAATTACGTTCTTT-ACCTTTTTTAGTAGTG
*
5085 TCATTTATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTATA-AAAATTAC
1 TCATTTATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
* ** * * *
5149 GTTTTTTCACCTTTTTTAGTAATGTCATCCATAATATAATATATTTCCAAATATAAAAAAACATT
66 GTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACATTTCCAAACATAAAAAAACATT
* * * *
5214 TTAGGTAATAAATAAAATT-CYGTTGCTTTACYTTTTTTAGTATTA
131 TTAGGTATTAAATAAAATTAC-GTT-CTTTACCTTTTTTAGTAGTG
* * * * * * *
5259 TCATTCATAATATAATACATTTCCAAACAWAAAATAAAKAYTTTTTAGGAAATAAAGAAAATTAC
1 TCATTTATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
** * * *
5324 GTTACTTCACCTTTTTTAGTAGTGTTATTTATATTAGAATACATTTACAAACATAAAAAAACATT
66 GTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACATTTCCAAACATAAAAAAACATT
** * * *
5389 TTAGGTATTAAATAAAACCACGTTACTATACCCTTTTTAATAGTG
131 TTAGGTATTAAATAAAATTACGTT-CTTTACCTTTTTTAGTAGTG
* * *
5434 TCATTCATAAAAAAATTA-ATTTCCAAACATAAAATAAAGA-TATTTTAGGTATTAAATAAAATT
1 TCATTTATAATATAA-TACATTTCCAAACATAAAATAAAGACT-TTTTAGGTATTAAATAAAATT
*
5497 ACGTTTTTTCACCTTTTTTAGTAGTATCATTTATAATAGAATACATTTCCAAACATAAAATAAAG
64 ACGTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACATTTCCAAACAT-AAA-AAA-
* *
5562 ACTTTTTAGGTATTAAA-AAAATTACGTTTTTTCACCTTTTTTAGT
126 ACATTTTAGGTATTAAATAAAATTACGTTCTTT-ACCTTTTTTAGT
Statistics
Matches: 4637, Mismatches: 655, Indels: 273
0.83 0.12 0.05
Matches are distributed among these distances:
171 1 0.00
172 19 0.00
173 267 0.06
174 1477 0.32
175 1360 0.29
176 389 0.08
177 645 0.14
178 472 0.10
179 7 0.00
ACGTcount: A:0.40, C:0.11, G:0.07, T:0.41
Consensus pattern (174 bp):
TCATTTATAATATAATACATTTCCAAACATAAAATAAAGACTTTTTAGGTATTAAATAAAATTAC
GTTTTTTCACCTTTTTTAGTAGTGTCATTTATAATAGAATACATTTCCAAACATAAAAAAACATT
TTAGGTATTAAATAAAATTACGTTCTTTACCTTTTTTAGTAGTG
Done.