genome.fa.s11185.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011185.1 Kokia drynarioides strain JFW-HI SEQ_126161, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  177861

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
575--755	96	1.9	96	82	6	233	35	14	20	29	1.92
1061--1142	41	2.0	41	92	4	139	24	6	34	35	1.80
1106--1424	29	10.9	29	73	13	217	31	5	31	31	1.80
1102--1410	58	5.3	59	82	5	342	31	5	32	31	1.80
1127--1365	119	2.0	120	86	2	338	33	5	31	29	1.81
3420--3536	18	6.6	18	84	4	157	54	2	0	41	1.20
3418--3504	6	14.5	6	70	17	56	52	2	1	43	1.21
3420--3536	35	3.3	35	89	3	162	54	2	0	41	1.20
12077--12106	15	1.9	16	93	6	53	56	0	3	40	1.16
18170--18199	14	2.1	14	93	0	51	30	26	13	30	1.94
19026--19051	4	6.5	4	100	0	52	26	0	23	50	1.50
20451--20487	19	2.0	18	89	5	56	27	16	29	27	1.97
21760--21842	24	3.5	24	84	0	121	30	25	20	24	1.99
27544--27615	22	3.2	22	96	2	126	13	20	23	41	1.88
27544--27703	23	7.0	23	81	9	157	11	25	22	40	1.88
27621--27729	25	4.5	25	82	11	113	12	31	20	35	1.90
27588--27726	48	2.9	48	83	10	162	12	30	21	35	1.90
28573--28597	2	12.5	2	100	0	50	0	48	0	52	1.00
36854--36893	20	2.1	19	86	13	55	5	15	5	75	1.15
37604--37670	33	2.0	33	100	0	134	50	11	14	22	1.76
40931--40980	18	2.7	19	76	17	52	54	0	2	44	1.11
44710--44759	21	2.5	20	83	6	66	22	12	28	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56689--56738	23	2.2	22	78	3	55	40	6	0	54	1.25
63196--63243	18	2.6	19	90	6	73	52	0	4	43	1.20
79159--79214	14	3.9	14	72	21	53	32	1	0	66	1.03
79154--79214	29	2.1	30	84	3	79	31	1	0	67	1.01
84601--84642	17	2.4	18	84	8	59	33	0	0	66	0.92
86469--86503	16	2.2	16	100	0	70	37	5	5	51	1.50
104242--104360	60	2.0	59	98	0	220	46	10	13	29	1.76
104553--104590	19	2.0	20	89	5	60	63	5	2	28	1.30
104600--104637	19	2.0	20	84	5	51	52	0	2	44	1.14
112719--112752	7	5.0	7	92	7	61	85	0	0	14	0.60
112719--112752	13	2.5	14	95	4	61	85	0	0	14	0.60
114066--114377	168	1.9	168	87	5	461	25	12	16	45	1.83
115518--115567	3	16.7	3	87	0	73	34	60	0	6	1.21
117781--117863	28	3.0	28	98	0	157	36	16	32	14	1.89
118507--118536	3	10.0	3	100	0	60	33	0	0	66	0.92
123080--123123	22	2.0	22	100	0	88	36	9	22	31	1.86
129830--129872	22	1.9	22	81	13	52	67	6	4	20	1.33
135886--135930	22	2.0	22	83	8	56	2	37	2	57	1.23
137372--137444	19	3.6	19	70	15	56	45	1	1	52	1.18
137372--137446	20	3.7	20	67	13	53	45	1	1	52	1.17
143396--143429	17	2.0	17	100	0	68	29	11	0	58	1.33
143918--143957	19	2.1	20	86	9	57	62	15	10	12	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151736--152021	85	3.3	85	84	6	319	41	9	14	34	1.79
157042--157073	16	1.9	17	93	6	57	43	0	0	56	0.99
157713--157766	28	1.9	28	85	7	74	44	11	5	38	1.63
163628--163685	25	2.3	25	93	0	98	46	12	6	34	1.68
164857--164894	20	1.9	19	85	15	51	31	0	5	63	1.17
167352--167388	19	1.9	19	88	0	56	45	8	13	32	1.73
169549--169580	3	10.7	3	93	0	55	34	34	0	31	1.58
169566--169904	177	1.9	180	87	5	499	24	15	16	44	1.86
176820--176864	6	7.5	6	89	0	63	22	31	0	46	1.52

Tables:   1

The End!