Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011188.1 Kokia drynarioides strain JFW-HI SEQ_126164, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2365
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.37

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:86 original size:21 final size:21

Alignment explanation


    Indices: 45--86  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

         35 TCTCCCATTA

                  *        **    
         45 AATTATGTTATTTATGTTTTT
          1 AATTATATTATTTATACTTTT

                                 
         66 AATTATATTATTTATACTTTT
          1 AATTATATTATTTATACTTTT

         87 CTATTGGACA


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.29, C:0.02, G:0.05, T:0.64


Consensus pattern (21 bp):   
AATTATATTATTTATACTTTT

Found at i:1082 original size:255 final size:249

Alignment explanation


    Indices: 631--1142  Score: 907
    Period size: 255  Copynumber: 2.0  Consensus size: 249

        621 TTAAATTTTC

                                                                             
        631 CATTAATAAAGCCAAGTCAAGACTAACTCTGTATAAGTGTAAGAAGGGCACAATCCAATATTTTG
          1 CATTAATAAAGCCAAGTCAAGACTAACTCTGTATAAGTGTAAGAAGGGCACAATCCAATATTTTG

                                        *   *        *  *           *        
        696 ATTTTTTGCTCAGTCAATATAACCCCAATTACTCGATTTTATGTTCACCTCACACTTTTCATATT
         66 ATTTTTTGCTCAGTCAATATAACCCCAACTACACGATTTTAGGTCCACCTCACACTCTTCATATT

                                                                             
        761 TTTTTGGCCATTAGTTTTTCAAGATTAACATCAACATTTGATTTAAAATCAACGTTAAGCCATGT
        131 TTTTTGGCCATTAGTTTTTCAAGATTAACATCAACATTTGATTTAAAATCAACGTTAAGCCATGT

                           *                                            
        826 TTAAATTCTTTTTTTTTTATATAATATTTTTAAAACTAACATTTTATATATATATTAATT
        196 TTAAATTC--TTTTTCTTATATAATATTTTTAAAACTAACA---T-TATATATATTAATT

                                                                             
        886 CATTAATAAAGCCAAGTCAAGACTAACTCTGTATAAGTGTAAGAAGGGCACAATCCAATATTTTG
          1 CATTAATAAAGCCAAGTCAAGACTAACTCTGTATAAGTGTAAGAAGGGCACAATCCAATATTTTG

                                                                             
        951 ATTTTTTGCTCAGTCAATATAACCCCAACTACACGATTTTAGGTCCACCTCACACTCTTCATATT
         66 ATTTTTTGCTCAGTCAATATAACCCCAACTACACGATTTTAGGTCCACCTCACACTCTTCATATT

                               *                                             
       1016 TTTTTGGCCATTAGTTTTTGAAGATTAACATCAACATTTGATTTAAAATCAACGTTAAGCCATGT
        131 TTTTTGGCCATTAGTTTTTCAAGATTAACATCAACATTTGATTTAAAATCAACGTTAAGCCATGT

                                                                  
       1081 TTAAATTCTTTTTCTTATATAATATTTTTAAAACTAACATTATATATATTAATT
        196 TTAAATTCTTTTTCTTATATAATATTTTTAAAACTAACATTATATATATTAATT

                    
       1135 CATTAATA
          1 CATTAATA

       1143 GAATGTCAAG


Statistics
Matches: 250,  Mismatches: 7, Indels: 6
        0.95            0.03        0.02

Matches are distributed among these distances:
 249   22  0.09
 250    1  0.00
 253   30  0.12
 255  197  0.79

ACGTcount: A:0.34, C:0.16, G:0.09, T:0.40


Consensus pattern (249 bp):   
CATTAATAAAGCCAAGTCAAGACTAACTCTGTATAAGTGTAAGAAGGGCACAATCCAATATTTTG
ATTTTTTGCTCAGTCAATATAACCCCAACTACACGATTTTAGGTCCACCTCACACTCTTCATATT
TTTTTGGCCATTAGTTTTTCAAGATTAACATCAACATTTGATTTAAAATCAACGTTAAGCCATGT
TTAAATTCTTTTTCTTATATAATATTTTTAAAACTAACATTATATATATTAATT
Done.