Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011192.1 Kokia drynarioides strain JFW-HI SEQ_126168, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1897
ACGTcount: A:0.41, C:0.14, G:0.10, T:0.35


Found at i:246 original size:17 final size:17

Alignment explanation


    Indices: 224--269  Score: 60
    Period size: 17  Copynumber: 2.8  Consensus size: 17

        214 TTTAAAATTT

                             
        224 TAATTTATATTATATTA
          1 TAATTTATATTATATTA

                    *        
        241 TAATTTATGTTA-ATTA
          1 TAATTTATATTATATTA

                  *       
        257 T-ATTTTTATTATA
          1 TAATTTATATTATA

        270 ACTATTTTTA


Statistics
Matches: 25,  Mismatches: 3, Indels: 3
        0.81            0.10        0.10

Matches are distributed among these distances:
  15    8  0.32
  16    6  0.24
  17   11  0.44

ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61


Consensus pattern (17 bp):   
TAATTTATATTATATTA

Found at i:373 original size:19 final size:19

Alignment explanation


    Indices: 336--373  Score: 51
    Period size: 19  Copynumber: 2.0  Consensus size: 19

        326 TTTTTAAAAA

                          *    
        336 TTTTAAAAAAAAATTATTT
          1 TTTTAAAAAAAAATCATTT

                                
        355 TTTTAAAAATAAAA-CATTT
          1 TTTTAAAAA-AAAATCATTT

        374 AGTATAAATA


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  19   13  0.76
  20    4  0.24

ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45


Consensus pattern (19 bp):   
TTTTAAAAAAAAATCATTT
Done.