genome.fa.s11193.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011193.1 Kokia drynarioides strain JFW-HI SEQ_126169, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  172438

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1165--1193	12	2.3	13	94	5	51	79	6	0	13	0.93
1107--1213	56	1.9	55	81	5	126	71	6	5	15	1.25
1267--1424	12	12.8	12	83	12	84	68	4	0	26	1.13
1289--1336	20	2.6	18	78	18	53	70	10	0	18	1.15
1326--1423	3	32.7	3	97	0	187	67	1	0	31	0.98
1603--1657	24	2.2	24	83	9	65	40	9	9	41	1.68
5152--5278	49	2.6	49	82	5	150	29	27	18	24	1.98
8883--9097	89	2.4	89	82	8	258	40	14	7	37	1.75
9220--9280	27	2.2	27	82	11	79	32	0	0	67	0.91
9220--9280	28	2.2	30	80	19	78	32	0	0	67	0.91
12391--12528	18	7.6	18	82	0	150	23	22	24	28	1.99
12578--12609	7	4.6	7	100	0	64	43	12	43	0	1.42
14537--14580	20	2.1	21	83	4	54	38	38	2	20	1.65
22165--22201	19	1.9	19	88	0	56	43	0	2	54	1.14
22172--22213	19	2.2	19	86	0	57	38	0	2	59	1.10
22172--22215	20	2.3	19	84	11	54	38	0	2	59	1.10
22162--22235	18	4.1	19	67	19	50	37	0	5	56	1.22
24125--24343	41	5.3	41	85	1	285	17	29	23	29	1.97
24125--24343	83	2.7	82	87	2	296	17	29	23	29	1.97
24345--24501	41	3.8	42	82	6	196	18	29	19	32	1.96
24353--24422	24	3.2	24	67	23	71	14	31	22	31	1.94
24256--24432	97	1.8	96	90	3	284	18	28	22	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24215--24481	138	1.9	138	93	0	462	17	29	21	31	1.96
30337--30367	14	2.2	14	100	0	62	19	6	22	51	1.69
30771--31159	194	2.0	194	88	1	582	28	14	12	44	1.81
31399--31470	30	2.4	31	81	6	85	48	13	12	25	1.78
34475--34501	7	3.9	7	100	0	54	44	0	0	55	0.99
35414--35476	10	6.5	10	71	10	51	60	1	3	34	1.22
35743--35776	14	2.3	15	90	5	52	55	17	11	14	1.68
38008--38041	17	2.0	17	100	0	68	41	29	0	29	1.57
48562--48831	30	9.0	30	79	0	243	33	4	24	37	1.76
49469--49498	13	2.3	13	94	0	51	26	13	6	53	1.64
50711--50914	50	4.1	50	87	0	282	20	25	20	34	1.96
50915--50958	21	2.1	21	95	0	79	20	25	13	40	1.89
51769--51929	83	1.9	83	89	0	250	39	11	18	31	1.85
60449--60490	19	2.2	19	83	8	50	28	23	7	40	1.81
61379--61411	17	1.9	17	88	11	50	18	27	12	42	1.85
65826--65878	17	3.1	17	76	15	56	54	16	13	15	1.71
67686--67936	29	8.6	29	82	6	292	32	2	29	34	1.72
67686--67936	59	4.3	58	85	4	317	32	2	29	34	1.72
67686--67936	88	2.9	88	83	4	319	32	2	29	34	1.72
69022--69050	15	1.9	15	100	0	58	55	0	0	44	0.99
69057--69112	21	2.6	21	71	2	58	37	10	3	48	1.56
69799--69850	17	3.0	17	81	10	61	46	5	0	48	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69806--69868	17	3.6	17	83	8	65	49	7	0	42	1.32
69808--69867	6	10.3	6	74	13	54	51	6	0	41	1.28
73966--73999	15	2.3	15	100	0	68	0	17	0	82	0.67
95437--95483	24	2.0	24	84	12	62	51	10	12	25	1.72
99691--99801	51	2.2	51	82	4	127	30	24	11	33	1.91
104380--104435	27	2.1	27	86	0	76	30	17	33	17	1.94
105199--105239	20	2.0	20	100	0	82	43	19	4	31	1.72
125236--125355	40	3.0	40	90	0	186	25	15	28	30	1.96
125237--125374	40	3.5	40	88	0	177	26	14	28	31	1.95
125362--125397	17	2.1	17	89	0	54	27	11	27	33	1.91
125322--125437	57	2.0	57	84	0	151	26	12	26	33	1.93
125387--125492	40	2.7	40	80	0	131	26	16	25	32	1.96
127093--127133	15	2.8	15	78	17	50	36	4	9	48	1.58
127093--127132	13	2.9	13	88	7	53	37	2	10	50	1.50
143723--143748	13	2.0	13	100	0	52	7	0	38	53	1.30
145447--145524	38	2.1	38	100	0	156	33	10	17	38	1.84
146562--146935	40	9.4	40	87	1	437	24	18	27	29	1.98
146565--146911	159	2.2	160	85	1	455	24	18	26	29	1.98
146565--146975	159	2.6	159	81	4	391	24	18	27	30	1.98
148801--148870	36	1.9	37	85	8	99	38	2	2	55	1.29
148796--148870	12	6.8	11	69	19	50	40	2	2	54	1.28
148797--148902	19	5.8	18	69	19	60	40	2	3	52	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154090--154128	18	2.2	18	100	0	78	38	33	5	23	1.77
162159--162190	15	2.1	15	100	0	64	43	37	0	18	1.51
162162--162199	15	2.5	15	91	4	58	44	39	0	15	1.47
168485--168616	40	3.2	39	89	6	147	42	9	25	22	1.83
168521--168616	40	2.4	40	98	0	183	42	8	23	25	1.82

Tables:   1

The End!