Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011201.1 Kokia drynarioides strain JFW-HI SEQ_126178, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 74716
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.35
Warning! 431 characters in sequence are not A, C, G, or T
Found at i:165 original size:31 final size:31
Alignment explanation
Indices: 129--187 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
119 TGCCATTTAT
129 TATTAATA-TTATTCTTATTAACTAATATTAC
1 TATTAATACTTA-TCTTATTAACTAATATTAC
* *
160 TATTAATACTTATCTTTTTAATTAATAT
1 TATTAATACTTATCTTATTAACTAATAT
188 GTATTGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
31 22 0.88
32 3 0.12
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.54
Consensus pattern (31 bp):
TATTAATACTTATCTTATTAACTAATATTAC
Found at i:878 original size:6 final size:6
Alignment explanation
Indices: 864--927 Score: 64
Period size: 6 Copynumber: 11.2 Consensus size: 6
854 ATTTGGAAAA
* *
864 TAAATT TAAACT TAAA-T TAAATT TAAATT CGAAA-- TAAATT TAAATT
1 TAAATT TAAATT TAAATT TAAATT TAAATT -TAAATT TAAATT TAAATT
*
910 T-AATA TAAATT TAAATT T
1 TAAATT TAAATT TAAATT T
928 CTAAAAAAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
4 3 0.06
5 9 0.19
6 33 0.69
7 3 0.06
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.44
Consensus pattern (6 bp):
TAAATT
Found at i:927 original size:17 final size:16
Alignment explanation
Indices: 832--927 Score: 95
Period size: 17 Copynumber: 5.6 Consensus size: 16
822 CTTTATTTAT
832 TTTAAATTTATAAT-AA
1 TTTAAATTTA-AATAAA
848 TCTTAAATTTGGAAAATAAA
1 T-TTAAATTT---AAATAAA
*
868 TTTAAACTTAAATTAAA
1 TTTAAATTTAAA-TAAA
*
885 TTTAAATTCGAAATAAA
1 TTTAAATT-TAAATAAA
902 TTTAAATTTAATATAAA
1 TTTAAATTTAA-ATAAA
919 TTTAAATTT
1 TTTAAATTT
928 CTAAAAAAAA
Statistics
Matches: 68, Mismatches: 4, Indels: 15
0.78 0.05 0.17
Matches are distributed among these distances:
16 6 0.09
17 45 0.66
18 3 0.04
19 10 0.15
20 4 0.06
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (16 bp):
TTTAAATTTAAATAAA
Found at i:4870 original size:19 final size:19
Alignment explanation
Indices: 4838--4879 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
4828 CAATTTACAT
*
4838 TTATTTATTCATTTGTATA
1 TTATTGATTCATTTGTATA
* *
4857 TTATTGATTTATTTGTTTA
1 TTATTGATTCATTTGTATA
4876 TTAT
1 TTAT
4880 CCGTGCCCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.24, C:0.02, G:0.07, T:0.67
Consensus pattern (19 bp):
TTATTGATTCATTTGTATA
Found at i:7205 original size:29 final size:30
Alignment explanation
Indices: 7172--7241 Score: 81
Period size: 28 Copynumber: 2.4 Consensus size: 30
7162 CAAAAATGCG
** *
7172 ATTTTTGGATGCCCGAGGGTAAAACA-GTA
1 ATTTTTGGACACCCGAGGGTAAAAAAGGTA
*
7201 A-TTTTGGACACTCGAGGGTAAAAAAGGTA
1 ATTTTTGGACACCCGAGGGTAAAAAAGGTA
*
7230 ATTTTTGAACAC
1 ATTTTTGGACAC
7242 TTGGGAGCAA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
28 20 0.59
29 5 0.15
30 9 0.26
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.29
Consensus pattern (30 bp):
ATTTTTGGACACCCGAGGGTAAAAAAGGTA
Found at i:7369 original size:58 final size:57
Alignment explanation
Indices: 7307--7559 Score: 230
Period size: 59 Copynumber: 4.3 Consensus size: 57
7297 GTTCAGCAGC
* *
7307 AAAATGGTAATTTTTAAAAAATTC-AGGGTAAAACTG-ATATTTTTGGAAGTTT-AGGGGT
1 AAAAT-GTAATTTTT-AGAAATTCGAGGGTAAAAATGTA-ATTTTTGGAAGTTTGA-GGGT
* * * ** *
7365 AAAATGTTATTTTTTGGAAGTTCGAGGGTAAAAATGTAATTTTTTAAAAGTTTGAAGGT
1 AAAATG-TAATTTTTAGAAATTCGAGGGTAAAAATGTAA-TTTTTGGAAGTTTGAGGGT
* *
7424 AAAATGGTAATTTTT-GAAATTCGAGAGTAAAAATGTAATTTTTGGAAAGTTCGAGGGT
1 AAAAT-GTAATTTTTAGAAATTCGAGGGTAAAAATGTAATTTTTGG-AAGTTTGAGGGT
* * * *
7482 AAAAATGTAATTTTTATGAAATTCGA-GGTTAAAATGTGATTTTTGAGAAGTTCGAGGTT
1 -AAAATGTAATTTTTA-GAAATTCGAGGGTAAAAATGTAATTTTTG-GAAGTTTGAGGGT
7541 AAAAATGTAATTTTT-GAAA
1 -AAAATGTAATTTTTAGAAA
7560 GTTTAGGGAT
Statistics
Matches: 165, Mismatches: 19, Indels: 23
0.80 0.09 0.11
Matches are distributed among these distances:
57 15 0.09
58 64 0.39
59 74 0.45
60 12 0.07
ACGTcount: A:0.38, C:0.03, G:0.22, T:0.38
Consensus pattern (57 bp):
AAAATGTAATTTTTAGAAATTCGAGGGTAAAAATGTAATTTTTGGAAGTTTGAGGGT
Found at i:7401 original size:30 final size:30
Alignment explanation
Indices: 7331--7555 Score: 180
Period size: 30 Copynumber: 7.7 Consensus size: 30
7321 TAAAAAATTC
* * *
7331 AGGGTAAAACTGATA-TTTTTGGAAGTT-T
1 AGGGTAAAAATGTTATTTTTTGGAAGTTCG
7359 AGGGGT-AAAATGTTATTTTTTGGAAGTTCG
1 A-GGGTAAAAATGTTATTTTTTGGAAGTTCG
* ** *
7389 AGGGTAAAAATGTAATTTTTTAAAAGTTTG
1 AGGGTAAAAATGTTATTTTTTGGAAGTTCG
* * * *
7419 AAGGT-AAAATGGTAATTTTT-GAAATTCG
1 AGGGTAAAAATGTTATTTTTTGGAAGTTCG
* *
7447 AGAGTAAAAATG-TAATTTTTGGAAAGTTCG
1 AGGGTAAAAATGTTATTTTTTGG-AAGTTCG
* *
7477 AGGGTAAAAATGTAATTTTTAT-GAAATTCG
1 AGGGTAAAAATGTTATTTTT-TGGAAGTTCG
* *
7507 A-GGTTAAAATGTGA-TTTTTGAGAAGTTCG
1 AGGGTAAAAATGTTATTTTTTG-GAAGTTCG
* *
7536 AGGTTAAAAATGTAATTTTT
1 AGGGTAAAAATGTTATTTTT
7556 GAAAGTTTAG
Statistics
Matches: 157, Mismatches: 27, Indels: 23
0.76 0.13 0.11
Matches are distributed among these distances:
27 1 0.01
28 28 0.18
29 58 0.37
30 59 0.38
31 10 0.06
32 1 0.01
ACGTcount: A:0.36, C:0.03, G:0.23, T:0.38
Consensus pattern (30 bp):
AGGGTAAAAATGTTATTTTTTGGAAGTTCG
Found at i:7556 original size:30 final size:29
Alignment explanation
Indices: 7365--7562 Score: 203
Period size: 30 Copynumber: 6.8 Consensus size: 29
7355 GTTTAGGGGT
*
7365 AAAATGTTATTTTTTG-GAAGTTCGAGGGTA
1 AAAATG-TAATTTTTGAGAAGTTCGA-GGTA
* * *
7395 AAAATGTAATTTTTTAAAAGTTTGAAGGT-
1 AAAATGTAATTTTTGAGAAGTTCG-AGGTA
7424 AAAATGGTAATTTTTGA-AA-TTCGAGAGTA
1 AAAAT-GTAATTTTTGAGAAGTTCGAG-GTA
7453 AAAATGTAATTTTTG-GAAAGTTCGAGGGTA
1 AAAATGTAATTTTTGAG-AAGTTCGA-GGTA
* *
7483 AAAATGTAATTTTT-ATGAAATTCGAGGTT
1 AAAATGTAATTTTTGA-GAAGTTCGAGGTA
*
7512 AAAATGTGATTTTTGAGAAGTTCGAGGTTA
1 AAAATGTAATTTTTGAGAAGTTCGAGG-TA
7542 AAAATGTAATTTTTGA-AAGTT
1 AAAATGTAATTTTTGAGAAGTT
7563 TAGGGATCAA
Statistics
Matches: 143, Mismatches: 12, Indels: 27
0.79 0.07 0.15
Matches are distributed among these distances:
27 2 0.01
28 15 0.10
29 52 0.36
30 71 0.50
31 3 0.02
ACGTcount: A:0.37, C:0.03, G:0.22, T:0.38
Consensus pattern (29 bp):
AAAATGTAATTTTTGAGAAGTTCGAGGTA
Found at i:7575 original size:29 final size:28
Alignment explanation
Indices: 7307--7567 Score: 165
Period size: 29 Copynumber: 8.9 Consensus size: 28
7297 GTTCAGCAGC
* * *
7307 AAAATGGTAATTTTTAAAAAATTCAGGGTA
1 AAAAT-GTAATTTTT-GAAAGTTTAGGGTA
* *
7337 AAACTG-ATATTTTTGGAAGTTTAGGGGT-
1 AAAATGTA-ATTTTTGAAAGTTTA-GGGTA
* * *
7365 AAAATGTTATTTTTTGGAAGTTCGAGGGTA
1 AAAATG-TAATTTTTGAAAGTT-TAGGGTA
* *
7395 AAAATGTAATTTTTTAAAAGTTTGAAGGT-
1 AAAATGTAA-TTTTTGAAAGTTT-AGGGTA
* *
7424 AAAATGGTAATTTTTGAAA-TTCGAGAGTA
1 AAAAT-GTAATTTTTGAAAGTT-TAGGGTA
*
7453 AAAATGTAATTTTTGGAAAGTTCGAGGGTA
1 AAAATGTAATTTTT-GAAAGTT-TAGGGTA
* *
7483 AAAATGTAATTTTTATGAAA--TTCGAGGTT
1 AAAATGTAA-TTTT-TGAAAGTTTAG-GGTA
* * *
7512 AAAATGTGATTTTTGAGAAGTTCGAGGTTA
1 AAAATGTAATTTTTGA-AAGTT-TAGGGTA
7542 AAAATGTAATTTTTGAAAGTTTAGGG
1 AAAATGTAATTTTTGAAAGTTTAGGG
7568 ATCAAAATAT
Statistics
Matches: 182, Mismatches: 29, Indels: 42
0.72 0.11 0.17
Matches are distributed among these distances:
27 3 0.02
28 35 0.19
29 68 0.37
30 66 0.36
31 9 0.05
32 1 0.01
ACGTcount: A:0.37, C:0.03, G:0.23, T:0.38
Consensus pattern (28 bp):
AAAATGTAATTTTTGAAAGTTTAGGGTA
Found at i:7575 original size:88 final size:85
Alignment explanation
Indices: 7307--7562 Score: 272
Period size: 88 Copynumber: 2.9 Consensus size: 85
7297 GTTCAGCAGC
* * *
7307 AAAATGGTAATTTTTAAAAAATTC-AGGGTAAAACTGATATTTTTG-GAAGTTTAGGGGT-AAAA
1 AAAAT-GTAATTTTTATAAAATTCGA-GGTAAAA-TG-TATTTTTGAGAAG-TTCGAGGTAAAAA
* *
7369 TGTTATTTTTTGGAAGTTCGAGGGTA
61 TG-TAATTTTTGAAAGTTCGAGGGTA
*
7395 AAAATGTAATTTTT-TAAAAGTTTGAAGGTAAAATGGTAATTTTTGA-AA-TTCGAGAGTAAAAA
1 AAAATGTAATTTTTATAAAA-TTCG-AGGTAAAAT-GT-ATTTTTGAGAAGTTCGAG-GTAAAAA
7457 TGTAATTTTTGGAAAGTTCGAGGGTA
61 TGTAATTTTT-GAAAGTTCGAGGGTA
*
7483 AAAATGTAATTTTTATGAAATTCGAGGTTAAAATGTGATTTTTGAGAAGTTCGAGGTTAAAAATG
1 AAAATGTAATTTTTATAAAATTCGAGG-TAAAATGT-ATTTTTGAGAAGTTCGAGG-TAAAAATG
7548 TAATTTTTGAAAGTT
63 TAATTTTTGAAAGTT
7563 TAGGGATCAA
Statistics
Matches: 145, Mismatches: 9, Indels: 28
0.80 0.05 0.15
Matches are distributed among these distances:
86 8 0.06
87 35 0.24
88 75 0.52
89 27 0.19
ACGTcount: A:0.38, C:0.03, G:0.22, T:0.38
Consensus pattern (85 bp):
AAAATGTAATTTTTATAAAATTCGAGGTAAAATGTATTTTTGAGAAGTTCGAGGTAAAAATGTAA
TTTTTGAAAGTTCGAGGGTA
Found at i:7581 original size:59 final size:59
Alignment explanation
Indices: 7411--7582 Score: 151
Period size: 59 Copynumber: 2.9 Consensus size: 59
7401 TAATTTTTTA
* * * * * *
7411 AAAGTTTGAAGGT-AAAATGGTAA-TTTT-TGAAATTCGAGAGTAAAAATGTAATTTTTGG
1 AAAGTTCGAGGGTAAAAAT-GTAATTTTTATGAAATTAGAG-GTCAAAATATGATTTTTGG
* * *
7469 AAAGTTCGAGGGTAAAAATGTAATTTTTATGAAATTCGAGGTTAAAATGTGATTTTT-G
1 AAAGTTCGAGGGTAAAAATGTAATTTTTATGAAATTAGAGGTCAAAATATGATTTTTGG
*
7527 AGAAGTTCGAGGTTAAAAATGTAA-TTTT-TGAAAGTTTAG-GGATCAAAATATGATTT
1 A-AAGTTCGAGGGTAAAAATGTAATTTTTATGAAA--TTAGAGG-TCAAAATATGATTT
7583 CTAATAATTC
Statistics
Matches: 99, Mismatches: 8, Indels: 13
0.82 0.07 0.11
Matches are distributed among these distances:
57 5 0.05
58 23 0.23
59 60 0.61
60 11 0.11
ACGTcount: A:0.38, C:0.03, G:0.22, T:0.37
Consensus pattern (59 bp):
AAAGTTCGAGGGTAAAAATGTAATTTTTATGAAATTAGAGGTCAAAATATGATTTTTGG
Found at i:9389 original size:17 final size:17
Alignment explanation
Indices: 9367--9456 Score: 90
Period size: 17 Copynumber: 5.3 Consensus size: 17
9357 TTTTTATTTC
*
9367 AAAATAAATTTAAATTT
1 AAAATAAATTTAAACTT
*
9384 AAAATAAATTTAAACTC
1 AAAATAAATTTAAACTT
* ***
9401 CAAATACGCTTAAACTT
1 AAAATAAATTTAAACTT
*
9418 ACAATAAATTTAAACTT
1 AAAATAAATTTAAACTT
* * *
9435 AAAATGAATTAAAATTT
1 AAAATAAATTTAAACTT
9452 AAAAT
1 AAAAT
9457 CTAAAATTGG
Statistics
Matches: 57, Mismatches: 16, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
17 57 1.00
ACGTcount: A:0.56, C:0.09, G:0.02, T:0.33
Consensus pattern (17 bp):
AAAATAAATTTAAACTT
Found at i:10208 original size:209 final size:209
Alignment explanation
Indices: 9838--11270 Score: 1976
Period size: 209 Copynumber: 6.9 Consensus size: 209
9828 TTCATCTCTC
* ** * * *
9838 GGTTTACTTCTCCATATCTCATCAGGAAGGTAACCACTCTATTGCTTCGACGTGCTTCTCAGTAT
1 GGTTCACTTCTCTGTATCTCATCAGGAAGGTAACCGCTTTATTGCTTCGACCTGCTTCTCAGTAT
* * *
9903 CTTATCAGGAAGATGTGGTTCGAAGATTTGCTCACTTTGAGTCTGGTTTCATTGATTTGGTCTAC
66 CTCATCAGGAAGCTGAGGTTCGAAGATTTGCTCACTTTGAGTCTGGTTTCATTGATTTGGTCTAC
* * * *
9968 TTCTCAGTATCCCATCAGGAAGATGACCGTATCACTTGTTTTGATCCACTTCTCTGTGTCTCATC
131 TTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTTAATCCACTTCTCTGTATCTCATC
*
10033 AGAAAGACGGATTT
196 AGAAAGACGGATCT
*
10047 GGTTCACTTCTCTGTATCTCATCAGGAAGGTAACCGCTTTATTGCTTCGACTTGCTTCTCAGTAT
1 GGTTCACTTCTCTGTATCTCATCAGGAAGGTAACCGCTTTATTGCTTCGACCTGCTTCTCAGTAT
* * * *
10112 CTTATCAGGAAGCTGGGGTTTGAAGATTTGCTCACTTTGAGTCTGGTTTCATTGATTTGGCCTAC
66 CTCATCAGGAAGCTGAGGTTCGAAGATTTGCTCACTTTGAGTCTGGTTTCATTGATTTGGTCTAC
* * ** *
10177 TTCTCAGTATCTCATCAGGAAGATTACCGTATCACTTGTTTTAATCTGCTTCTCTGTATCCCATC
131 TTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTTAATCCACTTCTCTGTATCTCATC
*
10242 AGGAAGACGGATCT
196 AGAAAGACGGATCT
* *
10256 GATTCACTTCTCTGTATCTCATCAAGAAGGTAACCGCTTTATTGCTTCGACCTGCTTCTCAGTAT
1 GGTTCACTTCTCTGTATCTCATCAGGAAGGTAACCGCTTTATTGCTTCGACCTGCTTCTCAGTAT
*
10321 CTCATCAGGAAGCTG-GGTTCGAAGATTTACTCACTTTGAGTCTGGTTTCATTGATTTGGTCTAC
66 CTCATCAGGAAGCTGAGGTTCGAAGATTTGCTCACTTTGAGTCTGGTTTCATTGATTTGGTCTAC
*
10385 TTCTCAGTATCTCATCAGGAAGAT----G--------G-TTTAGATCCACTTCTCTGTGTCTCAT
131 TTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTTA-ATCCACTTCTCTGTATCTCAT
10437 CA-AGAAGACGGATCT
195 CAGA-AAGACGGATCT
* * *
10452 GGTTCACTTCTCTGTATCTCA-CTAGAAAGGTAACCGCTTTATTGCTTCGACTTGCTTCTCATTA
1 GGTTCACTTCTCTGTATCTCATC-AGGAAGGTAACCGCTTTATTGCTTCGACCTGCTTCTCAGTA
* *
10516 TCTCATCAAGAAGCTGGGGTTCGAAGATTTGCTCACTTTGAGTCTGGTTTCATTGATTTGGTCTA
65 TCTCATCAGGAAGCTGAGGTTCGAAGATTTGCTCACTTTGAGTCTGGTTTCATTGATTTGGTCTA
* * * *
10581 CTTCTCAGTATCTCATCAGGAAGATGACTGCATCACTTGTTTTGATCCACTTCTCTATGTCTCAT
130 CTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTTAATCCACTTCTCTGTATCTCAT
*
10646 CA-AGAAGATGGATCT
195 CAGA-AAGACGGATCT
* * * *
10661 GGTTCACTTCTCTATATCTCATTAGGAAGGTAATCGCTTTATTGCTTTGACCTGCTTCTCAGTAT
1 GGTTCACTTCTCTGTATCTCATCAGGAAGGTAACCGCTTTATTGCTTCGACCTGCTTCTCAGTAT
* * * *
10726 CTCAGCAGGAAGCTGAGGTTTGAAGATTTGCTCACTTTGAGTCTAGTTTCATTGATTTGGTCTAT
66 CTCATCAGGAAGCTGAGGTTCGAAGATTTGCTCACTTTGAGTCTGGTTTCATTGATTTGGTCTAC
* * * * *
10791 TTCTTAATATCTCATCAAGAAGATGACCGCATCACTTGTTTAAATCCATTTCTCTGTATCTCATC
131 TTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTTAATCCACTTCTCTGTATCTCATC
*
10856 AGGAAGACGGATCT
196 AGAAAGACGGATCT
* * *
10870 GGTTCACTTCTCTGTATCTCACCAGGAAGATAACCGTTTTATTGCTTCGACCTGCTTCTCAGTAT
1 GGTTCACTTCTCTGTATCTCATCAGGAAGGTAACCGCTTTATTGCTTCGACCTGCTTCTCAGTAT
* * * * * * *
10935 CTCATCAGGAAGTTGAGGTTTGAAGATTTGCTAACTTTGAGTTTGGTTTCATTTATTTCGCCTAC
66 CTCATCAGGAAGCTGAGGTTCGAAGATTTGCTCACTTTGAGTCTGGTTTCATTGATTTGGTCTAC
**
11000 TTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTTAATCTGCTTCTCTGTATCTCATC
131 TTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTTAATCCACTTCTCTGTATCTCATC
*
11065 AG-GAGACGGATCT
196 AGAAAGACGGATCT
* *
11078 GGTTCACTTCTCTATATCTCATTAGGAAGGTAACCGCTTTATTGCTTCGACCTGCTTCTCAGTAT
1 GGTTCACTTCTCTGTATCTCATCAGGAAGGTAACCGCTTTATTGCTTCGACCTGCTTCTCAGTAT
* * *
11143 CTCATCAGGAAGCTGAGGTTCGAAG-TTTCGCTCACATTGAG-CTTGGTTTCATTCATTTGGCCT
66 CTCATCAGGAAGCTGAGGTTCGAAGATTT-GCTCACTTTGAGTC-TGGTTTCATTGATTTGGTCT
* * * *
11206 ACTTCTCAATATCTCATCAGGAAGATGACCGCCTTACTTGTTTTAATCC-C--CTCTATATCTCA
129 ACTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTTAATCCACTTCTCTGTATCTCA
11268 TCA
194 TCA
11271 AGAAGCTGAG
Statistics
Matches: 1097, Mismatches: 106, Indels: 46
0.88 0.08 0.04
Matches are distributed among these distances:
195 5 0.00
196 103 0.09
197 72 0.07
201 1 0.00
204 1 0.00
205 14 0.01
207 4 0.00
208 236 0.22
209 658 0.60
210 3 0.00
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (209 bp):
GGTTCACTTCTCTGTATCTCATCAGGAAGGTAACCGCTTTATTGCTTCGACCTGCTTCTCAGTAT
CTCATCAGGAAGCTGAGGTTCGAAGATTTGCTCACTTTGAGTCTGGTTTCATTGATTTGGTCTAC
TTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTTAATCCACTTCTCTGTATCTCATC
AGAAAGACGGATCT
Found at i:11299 original size:121 final size:121
Alignment explanation
Indices: 11140--11369 Score: 397
Period size: 121 Copynumber: 1.9 Consensus size: 121
11130 TGCTTCTCAG
* *
11140 TATCTCATCAGGAAGCTGAGGTTCGAAGTTTCGCTCACATTGAGCTTGGTTTCATTCATTTGGCC
1 TATCTCATCAAGAAGCTGAGGCTCGAAGTTTCGCTCACATTGAGCTTGGTTTCATTCATTTGGCC
*
11205 TACTTCTCAATATCTCATCAGGAAGATGACCGCCTTACTTGTTTTAATCCCCTCTA
66 TACTTCTCAATATCTCATCAGGAAGATGACCGCCTCACTTGTTTTAATCCCCTCTA
*
11261 TATCTCATCAAGAAGCTGAGGCTCGAAGTTTCGCTCACATTGAGCTTGGTTTCATTGATTTGGCC
1 TATCTCATCAAGAAGCTGAGGCTCGAAGTTTCGCTCACATTGAGCTTGGTTTCATTCATTTGGCC
* * *
11326 TACTTCTCAGTATCTTATCAGGAAGATGATCGCCTCACTTGTTT
66 TACTTCTCAATATCTCATCAGGAAGATGACCGCCTCACTTGTTT
11370 CAATTTGCTT
Statistics
Matches: 102, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
121 102 1.00
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (121 bp):
TATCTCATCAAGAAGCTGAGGCTCGAAGTTTCGCTCACATTGAGCTTGGTTTCATTCATTTGGCC
TACTTCTCAATATCTCATCAGGAAGATGACCGCCTCACTTGTTTTAATCCCCTCTA
Found at i:11466 original size:48 final size:48
Alignment explanation
Indices: 11413--11535 Score: 165
Period size: 48 Copynumber: 2.6 Consensus size: 48
11403 AATTTGGTCC
* * *
11413 ACTTCTCAGTATCTCATCAGGAAGCTGATCATTTTATTTCTTTGACTT
1 ACTTCTCAGTATCTCATCAGGAAGCTGATCATTTTATTGCTTCGACCT
* * * *
11461 GCTTCTCAGTATCACATCAAGAAGGTGATCATTTTATTGCTTCGACCT
1 ACTTCTCAGTATCTCATCAGGAAGCTGATCATTTTATTGCTTCGACCT
* *
11509 ACTTATCAATATCTCATCAGGAAGCTG
1 ACTTCTCAGTATCTCATCAGGAAGCTG
11536 GGTTCGAAGT
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 62 1.00
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (48 bp):
ACTTCTCAGTATCTCATCAGGAAGCTGATCATTTTATTGCTTCGACCT
Found at i:11723 original size:257 final size:257
Alignment explanation
Indices: 11260--11741 Score: 646
Period size: 257 Copynumber: 1.9 Consensus size: 257
11250 AATCCCCTCT
*
11260 ATATCTCATCAAGAAGCTGAGGCTCGAAGTTTCGCTCACATTGAGCTTGGTTTCATTGATTTGGC
1 ATATCTCATCAAGAAGCTGAGGCTCGAAGTTTCGCTCACATCGAGCTTGGTTTCATTGATTTGGC
* * * * ***
11325 CTACTTCTCAGTATCTTATCAGGAAGATGATCGCCTCACTTGTTTCAATTTGCTTCTCTATATCT
66 CTACTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTATTTCAATCCACTTCTCTATATCT
* * * * *
11390 CATTAAGAAGACAAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTGATCATTTTATTTCTT
131 CATCAAGAAGACAAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTGACCACTTAATTGCTT
* *
11455 TGACTTGCTTCTCAGTATCACATCAAGAAGGTGATCATTTTATTGCTTCGACCTACTTATCA
196 CGACCTGCTTCTCAGTATCACATCAAGAAGGTGATCATTTTATTGCTTCGACCTACTTATCA
* * * *
11517 ATATCTCATCAGGAAGCTG-GGTTCGAAGTTTTGCTTACATCGAGCTTTGGTTTCATTGATTTGG
1 ATATCTCATCAAGAAGCTGAGGCTCGAAGTTTCGCTCACATCGAGC-TTGGTTTCATTGATTTGG
* * ** *
11581 TCTACTTCTCAGTA-CGTCATCAGGAAGATGACCGCATTACTTATTTTGATCCACTTCTCTGTAT
65 CCTACTTCTCAGTATC-TCATCAGGAAGATGACCGCATCACTTATTTCAATCCACTTCTCTATAT
* * * *
11645 CTCATCAAGAAGACGAATTTGGTCTACTTCTCTGTATCTCATCAGGAAGAC-GACCGCTTAATTG
129 CTCATCAAGAAGACAAATTTGGTCCACTTCTCAGTATCTCATCAGGAAG-CTGACCACTTAATTG
* *
11709 CTTCGACCTGCTTCTCAGTATCTCATCAGGAAG
193 CTTCGACCTGCTTCTCAGTATCACATCAAGAAG
11742 CTGGGGTTCG
Statistics
Matches: 192, Mismatches: 30, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
256 23 0.12
257 168 0.88
258 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.36
Consensus pattern (257 bp):
ATATCTCATCAAGAAGCTGAGGCTCGAAGTTTCGCTCACATCGAGCTTGGTTTCATTGATTTGGC
CTACTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTATTTCAATCCACTTCTCTATATCT
CATCAAGAAGACAAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTGACCACTTAATTGCTT
CGACCTGCTTCTCAGTATCACATCAAGAAGGTGATCATTTTATTGCTTCGACCTACTTATCA
Found at i:11891 original size:39 final size:39
Alignment explanation
Indices: 11848--11982 Score: 129
Period size: 39 Copynumber: 3.6 Consensus size: 39
11838 GATTACTGCA
11848 ATCTGCCCCATGATCAGGGTAAGAGGTTGGATGACTATG
1 ATCTGCCCCATGATCAGGGTAAGAGGTTGGATGACTATG
* * * * *
11887 ATCTGCTCCATGGTCGGGGTAAAAGATNT--ACTG-C-A--
1 ATCTGCCCCATGATCAGGGTAAGAGGT-TGGA-TGACTATG
*
11922 ATCTGCCCCATGATCAGGGTCAGAGGTTGGATGACTATG
1 ATCTGCCCCATGATCAGGGTAAGAGGTTGGATGACTATG
* * *
11961 ATCTGCTCCATGGTCGGGGTAA
1 ATCTGCCCCATGATCAGGGTAA
11983 AAGATCGGAT
Statistics
Matches: 73, Mismatches: 15, Indels: 16
0.70 0.14 0.15
Matches are distributed among these distances:
34 1 0.01
35 23 0.32
36 2 0.03
37 2 0.03
38 2 0.03
39 42 0.58
40 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (39 bp):
ATCTGCCCCATGATCAGGGTAAGAGGTTGGATGACTATG
Found at i:11962 original size:74 final size:73
Alignment explanation
Indices: 11838--11987 Score: 282
Period size: 74 Copynumber: 2.0 Consensus size: 73
11828 GTTTGTTTTG
11838 GATTACTGCAATCTGCCCCATGATCAGGGTAAGAGGTTGGATGACTATGATCTGCTCCATGGTCG
1 GATTACTGCAATCTGCCCCATGATCAGGGTAAGAGGTTGGATGACTATGATCTGCTCCATGGTCG
11903 GGGTAAAA
66 GGGTAAAA
*
11911 GATNTACTGCAATCTGCCCCATGATCAGGGTCAGAGGTTGGATGACTATGATCTGCTCCATGGTC
1 GAT-TACTGCAATCTGCCCCATGATCAGGGTAAGAGGTTGGATGACTATGATCTGCTCCATGGTC
11976 GGGGTAAAA
65 GGGGTAAAA
11985 GAT
1 GAT
11988 CGGATGGTTA
Statistics
Matches: 75, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
73 3 0.04
74 72 0.96
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.26
Consensus pattern (73 bp):
GATTACTGCAATCTGCCCCATGATCAGGGTAAGAGGTTGGATGACTATGATCTGCTCCATGGTCG
GGGTAAAA
Found at i:12056 original size:78 final size:79
Alignment explanation
Indices: 11974--12611 Score: 571
Period size: 78 Copynumber: 8.2 Consensus size: 79
11964 TGCTCCATGG
* ** * * * * *
11974 TCGGGGTAAAAGATCGGATGGTTACAATCTGCCCCTA-TCTCAGGTTAAGAGATAGGCAGATGGT
1 TCGGGGTAAAAGATCGAATGACTACAATCTGCCCCTAGGCTCGGGGTAAGAGATTGGCTGATGGT
* *
12038 GATCTGCCTTAGGC
66 GATCTACCTCAGGC
* * **
12052 TCGGGGTAAAAGATCGAATGACTGCAATCTGCCCC-AAGCTCGGGGTAAGAGATTTACTGATGGT
1 TCGGGGTAAAAGATCGAATGACTACAATCTGCCCCTAGGCTCGGGGTAAGAGATTGGCTGATGGT
* *
12116 GATTTACCTCAAGC
66 GATCTACCTCAGGC
* * * * ** * *
12130 TCGAGGTAAGAGATCGGATGGCTGTAATCT-ACCCTAGGCTCGGGGTAAGAGATTGGTTGATGGT
1 TCGGGGTAAAAGATCGAATGACTACAATCTGCCCCTAGGCTCGGGGTAAGAGATTGGCTGATGGT
12194 GATCTACCTCAGGC
66 GATCTACCTCAGGC
12208 TCGGGGTAAAAGATCGAATGACTACAATCTGCCCC-AGGCTCGGGGTAAGAGATTGGCTGATGGT
1 TCGGGGTAAAAGATCGAATGACTACAATCTGCCCCTAGGCTCGGGGTAAGAGATTGGCTGATGGT
12272 GATCTATCC-CAGGC
66 GATCTA-CCTCAGGC
* * * *
12286 TCGGGGTAAAAGATCGAATGACTACAATTTG-CCCTAGGTTCAGGGTAAAAGATTGGCTGATGGT
1 TCGGGGTAAAAGATCGAATGACTACAATCTGCCCCTAGGCTCGGGGTAAGAGATTGGCTGATGGT
* *
12350 GAACTA-CTCCAAGC
66 GATCTACCT-CAGGC
** * * ** * *
12364 TCAAGGTAAAAGATCGAATGACGACAATTTATCCC-AGGCTCGGGGTAAGAGATTGGCTAATTGT
1 TCGGGGTAAAAGATCGAATGACTACAATCTGCCCCTAGGCTCGGGGTAAGAGATTGGCTGATGGT
* * *
12428 GATCTGCCCCAAGC
66 GATCTACCTCAGGC
* * * * *** * * * * *
12442 TCGAGATAAAAGATCAAATGGCGGTAATCTACCCC-AGGCTCGAGGTAAGAAATTAGTTGATGGT
1 TCGGGGTAAAAGATCGAATGACTACAATCTGCCCCTAGGCTCGGGGTAAGAGATTGGCTGATGGT
* *
12506 GATCTACCCCAAGC
66 GATCTACCTCAGGC
* * * * * ** *
12520 TCGGGGTAAGAGATC-AGATTATTGCAATCTGCCCC-AAGCTCCTGGTAAGAGATTGACTGATGG
1 TCGGGGTAAAAGATCGA-ATGACTACAATCTGCCCCTAGGCTCGGGGTAAGAGATTGGCTGATGG
*
12583 TGATCTA-CTCTAGGA
65 TGATCTACCTC-AGGC
*
12598 TCGGGGTAAGAGAT
1 TCGGGGTAAAAGAT
12612 TGAAATCTTC
Statistics
Matches: 462, Mismatches: 87, Indels: 22
0.81 0.15 0.04
Matches are distributed among these distances:
76 1 0.00
77 10 0.02
78 442 0.96
79 9 0.02
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (79 bp):
TCGGGGTAAAAGATCGAATGACTACAATCTGCCCCTAGGCTCGGGGTAAGAGATTGGCTGATGGT
GATCTACCTCAGGC
Found at i:12082 original size:39 final size:39
Alignment explanation
Indices: 12039--12489 Score: 194
Period size: 39 Copynumber: 11.6 Consensus size: 39
12029 GCAGATGGTG
** *
12039 ATCTGCCTTAGGCTCGGGGTAAAAGATCGAATGACTGCA
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGAATGACTGTA
* * ** * *
12078 ATCTGCCCCAAGCTCGGGGTAAGAGATTTACTGA-TGGTG
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGAATGACT-GTA
* * * * * * * *
12117 ATTTACCTCAAGCTCGAGGTAAGAGATCGGATGGCTGTA
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGAATGACTGTA
* * * * ** *
12156 ATCTACCCTAGGCTCGGGGTAAGAGATTGGTTGA-TGGTG
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGAATGACT-GTA
* * **
12195 ATCTACCTCAGGCTCGGGGTAAAAGATCGAATGACTACA
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGAATGACTGTA
* * ** *
12234 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTGA-TGGTG
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGAATGACT-GTA
** **
12273 ATCTATCCCAGGCTCGGGGTAAAAGATCGAATGACTACA
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGAATGACTGTA
* * * * * **
12312 ATTTGCCCTAGGTTCAGGGTAAAAGATTGGCTGA-TGGTGA
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGAATGACT-GT-A
* * * ** *
12352 A-CTACTCCAAGCTCAAGGTAAAAGATCGAATGAC-GACA
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGAATGACTG-TA
* ** * * ** * * *
12390 ATTTATCCCAGGCTCGGGGTAAGAGATTGGCTAATTGTG
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGAATGACTGTA
* * * * * *
12429 ATCTGCCCCAAGCTCGAGATAAAAGATCAAATGGCGGTA
1 ATCTGCCCCAGGCTCGGGGTAAAAGATCGAATGACTGTA
* *
12468 ATCTACCCCAGGCTCGAGGTAA
1 ATCTGCCCCAGGCTCGGGGTAA
12490 GAAATTAGTT
Statistics
Matches: 290, Mismatches: 110, Indels: 24
0.68 0.26 0.06
Matches are distributed among these distances:
38 7 0.02
39 277 0.96
40 6 0.02
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (39 bp):
ATCTGCCCCAGGCTCGGGGTAAAAGATCGAATGACTGTA
Found at i:12715 original size:41 final size:41
Alignment explanation
Indices: 12601--12741 Score: 174
Period size: 41 Copynumber: 3.4 Consensus size: 41
12591 TCTAGGATCG
* * * * * * *
12601 GGGTAAGAGATTGAAATCTTCATTCTGCCCTTTTTGATTTA
1 GGGTAAAAGACTGGAATCTTCAATCTGCCCTTCTTAATTAA
* * *
12642 GGGTAAAAAAACTAGAATCTTCAATCTACCCTTCTTAATTAA
1 GGGT-AAAAGACTGGAATCTTCAATCTGCCCTTCTTAATTAA
12684 GGGTAAAAGACTGGAATCTTCAATCTGCCCTTCTTAATTAA
1 GGGTAAAAGACTGGAATCTTCAATCTGCCCTTCTTAATTAA
*
12725 GGGTAAAAGACTTGAAT
1 GGGTAAAAGACTGGAAT
12742 GATGATGTAA
Statistics
Matches: 85, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
41 54 0.64
42 31 0.36
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Consensus pattern (41 bp):
GGGTAAAAGACTGGAATCTTCAATCTGCCCTTCTTAATTAA
Found at i:13012 original size:99 final size:99
Alignment explanation
Indices: 12895--13084 Score: 231
Period size: 99 Copynumber: 1.9 Consensus size: 99
12885 CCATCTTATT
* ** * * * *
12895 TTCTAAGGTACCGGGTTCG-CAGGTGTGGCATCAACCTTT-CCTTCATATCTTTTAAGGTACCAT
1 TTCTAAGGTACCAGGTTCGTCA-GTACGGCATCAACCTTTCCCTTAAAATC-TTCAAGGTACCAG
*
12958 GTTCGCCGTTGCGGCCTCAACCTTTCCCTTAATTTC
64 GTTCGCCATTGCGGCCTCAACCTTTCCCTTAATTTC
* * * * *
12994 TTCTAAGGTACCAGGTTCGTCATTACGGCCTCAGCCTTTCCCTTAAAATCTTCATGGTACCGGGT
1 TTCTAAGGTACCAGGTTCGTCAGTACGGCATCAACCTTTCCCTTAAAATCTTCAAGGTACCAGGT
13059 TCGCCATTGCGGCCTCAACCTTTCCC
66 TCGCCATTGCGGCCTCAACCTTTCCC
13085 ATCGTGTCTT
Statistics
Matches: 76, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
99 66 0.87
100 10 0.13
ACGTcount: A:0.17, C:0.31, G:0.19, T:0.33
Consensus pattern (99 bp):
TTCTAAGGTACCAGGTTCGTCAGTACGGCATCAACCTTTCCCTTAAAATCTTCAAGGTACCAGGT
TCGCCATTGCGGCCTCAACCTTTCCCTTAATTTC
Found at i:13095 original size:49 final size:49
Alignment explanation
Indices: 12901--13134 Score: 202
Period size: 49 Copynumber: 4.8 Consensus size: 49
12891 TATTTTCTAA
* * * * * *
12901 GGTACCGGGTTCG-CAGGTGTGGCATCAACCTTT-CCTTCATATCTTTTAA
1 GGTACCGGGTTCGCCA-TTGCGGCCTCAACCTTTCCCTTAATATC-TTCAT
** * * *
12950 GGTACCATGTTCGCCGTTGCGGCCTCAACCTTTCCCTTAATTTCTTCTAA
1 GGTACCGGGTTCGCCATTGCGGCCTCAACCTTTCCCTTAATATCTTC-AT
* * * * *
13000 GGTACCAGGTTCGTCATTACGGCCTCAGCCTTTCCCTTAAAATCTTCAT
1 GGTACCGGGTTCGCCATTGCGGCCTCAACCTTTCCCTTAATATCTTCAT
* ** * *
13049 GGTACCGGGTTCGCCATTGCGGCCTCAACCTTTCCCATCGTGTCTTCGT
1 GGTACCGGGTTCGCCATTGCGGCCTCAACCTTTCCCTTAATATCTTCAT
* * * *
13098 GGTATCGGGTTCGTCGTTGCGGCCTTAACCTTTCCCT
1 GGTACCGGGTTCGCCATTGCGGCCTCAACCTTTCCCT
13135 GTCAAACCTG
Statistics
Matches: 150, Mismatches: 32, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
49 99 0.66
50 51 0.34
ACGTcount: A:0.15, C:0.30, G:0.21, T:0.34
Consensus pattern (49 bp):
GGTACCGGGTTCGCCATTGCGGCCTCAACCTTTCCCTTAATATCTTCAT
Found at i:14076 original size:18 final size:17
Alignment explanation
Indices: 14041--14120 Score: 74
Period size: 18 Copynumber: 4.5 Consensus size: 17
14031 AGACCTCTCC
* *
14041 TTTTCT-TTTTCCTGTT
1 TTTTCTATTTTCTTTTT
14057 TTTTCTATTTTCTATTTT
1 TTTTCTATTTTCT-TTTT
14075 TTTTCTATTTTCTTTTCT
1 TTTTCTATTTTCTTTT-T
*
14093 TTTTTTATTCTTCTTCTCTT
1 TTTTCTATT-TTCTT-T-TT
14113 TTTT-TATT
1 TTTTCTATT
14121 GAATCCGAGT
Statistics
Matches: 55, Mismatches: 3, Indels: 9
0.82 0.04 0.13
Matches are distributed among these distances:
16 6 0.11
17 8 0.15
18 25 0.45
19 9 0.16
20 6 0.11
21 1 0.02
ACGTcount: A:0.06, C:0.15, G:0.01, T:0.78
Consensus pattern (17 bp):
TTTTCTATTTTCTTTTT
Found at i:14095 original size:19 final size:18
Alignment explanation
Indices: 14055--14120 Score: 80
Period size: 19 Copynumber: 3.6 Consensus size: 18
14045 CTTTTTCCTG
14055 TTTTTTCTATTTTCTATTT-
1 TTTTTT-TATTTTCT-TTTC
*
14074 TTTTTCTATTTTCTTTTC
1 TTTTTTTATTTTCTTTTC
*
14092 TTTTTTTATTCTTCTTCTC
1 TTTTTTTATT-TTCTTTTC
14111 TTTTTTTATT
1 TTTTTTTATT
14121 GAATCCGAGT
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
17 3 0.07
18 17 0.40
19 22 0.52
ACGTcount: A:0.08, C:0.14, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTTTTATTTTCTTTTC
Found at i:14104 original size:11 final size:11
Alignment explanation
Indices: 14064--14103 Score: 55
Period size: 11 Copynumber: 3.5 Consensus size: 11
14054 GTTTTTTCTA
14064 TTTTCTATTTT
1 TTTTCTATTTT
14075 TTTTCTATTTT
1 TTTTCTATTTT
14086 CTTTTCT-TTTT
1 -TTTTCTATTTT
14097 TTATTCT
1 TT-TTCT
14104 TCTTCTCTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 2 0.07
11 19 0.70
12 6 0.22
ACGTcount: A:0.07, C:0.12, G:0.00, T:0.80
Consensus pattern (11 bp):
TTTTCTATTTT
Found at i:14109 original size:29 final size:30
Alignment explanation
Indices: 14057--14114 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
14047 TTTTCCTGTT
* *
14057 TTTTCTATTTTCTATTTTTTTTCTATTTTC
1 TTTTCTATTTTCTATTCTTCTTCTATTTTC
* *
14087 TTTTCT-TTTTTTATTCTTCTTCTCTTTT
1 TTTTCTATTTTCTATTCTTCTTCTATTTT
14115 TTTATTGAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 18 0.75
30 6 0.25
ACGTcount: A:0.07, C:0.16, G:0.00, T:0.78
Consensus pattern (30 bp):
TTTTCTATTTTCTATTCTTCTTCTATTTTC
Found at i:18750 original size:2 final size:2
Alignment explanation
Indices: 18745--18777 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
18735 TATATATATA
18745 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
18778 CGAAACCATC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:19829 original size:59 final size:58
Alignment explanation
Indices: 19766--20102 Score: 287
Period size: 59 Copynumber: 5.7 Consensus size: 58
19756 TAATTTTGAG
* *
19766 AGTTTTGAGGTCGAAAATGGAGATTTTAGAAG-TTCGAGGGTAAAAAT-GAGATTTTTAAA
1 AGTTTTGAGGT-AAAAATGGA-ATTTTGGAAGTTTCGAGGGTAAAAATGGA-ATTTTTAAA
* *
19825 AGTTTT-ATGGGTAAAAATGGAATTTTTGGAAGTTTC-AGGGGTAAAAATGGAATCTTTCAA
1 AGTTTTGA--GGTAAAAATGGAA-TTTTGGAAGTTTCGA-GGGTAAAAATGGAATTTTTAAA
* * * * * ***
19885 AGTTTCGAGGTAAAAAGGGAATTTTTGGAAGTTTTGGGGGTAAAAAGGGAATTTTTTGT
1 AGTTTTGAGGTAAAAATGGAA-TTTTGGAAGTTTCGAGGGTAAAAATGGAATTTTTAAA
* * *
19944 TGTTTTG-GGTTAAAAATGGAATTTTTGAAAGTTTCGAGGGTAAAAATGGAATTTTTTGAA
1 AGTTTTGAGG-TAAAAATGGAA-TTTTGGAAGTTTCGAGGGTAAAAATGGAA-TTTTTAAA
* *
20004 A-TTTT-AGGGTCAAAAATGGATTTTTTGGAAGTTTCGA-GGTAAAAATGGAA-TTTTAGGA
1 AGTTTTGA-GGT-AAAAATGGA-ATTTTGGAAGTTTCGAGGGTAAAAATGGAATTTTTA-AA
**
20062 AGTTTCAAGGGTAAAAATGGAATTTTTGGAAGTTTCGAGGG
1 AGTTTTGA-GGTAAAAATGGAA-TTTTGGAAGTTTCGAGGG
20103 ACCTCCAGGG
Statistics
Matches: 229, Mismatches: 30, Indels: 37
0.77 0.10 0.12
Matches are distributed among these distances:
57 4 0.02
58 6 0.03
59 151 0.66
60 65 0.28
61 3 0.01
ACGTcount: A:0.34, C:0.03, G:0.28, T:0.35
Consensus pattern (58 bp):
AGTTTTGAGGTAAAAATGGAATTTTGGAAGTTTCGAGGGTAAAAATGGAATTTTTAAA
Found at i:19839 original size:30 final size:30
Alignment explanation
Indices: 19779--20102 Score: 220
Period size: 30 Copynumber: 10.9 Consensus size: 30
19769 TTTGAGGTCG
*
19779 AAAATGGAGA-TTTTAGAAG-TTC-GAGGGTA
1 AAAATGGA-ATTTTTAAAAGTTTCAG-GGGTA
* *
19808 AAAAT-GAGATTTTTAAAAGTTTTATGGGTA
1 AAAATGGA-ATTTTTAAAAGTTTCAGGGGTA
**
19838 AAAATGGAATTTTTGGAAGTTTCAGGGGTA
1 AAAATGGAATTTTTAAAAGTTTCAGGGGTA
* * *
19868 AAAATGGAATCTTTCAAAGTTTC-GAGGTA
1 AAAATGGAATTTTTAAAAGTTTCAGGGGTA
* ** **
19897 AAAAGGGAATTTTTGGAAGTTTTGGGGGTA
1 AAAATGGAATTTTTAAAAGTTTCAGGGGTA
* **** * *
19927 AAAAGGGAATTTTTTGTTGTTT-TGGGTTA
1 AAAATGGAATTTTTAAAAGTTTCAGGGGTA
*
19956 AAAATGGAATTTTTGAAAGTTTC-GAGGGTA
1 AAAATGGAATTTTTAAAAGTTTCAG-GGGTA
* *
19986 AAAATGGAATTTTTTGAAA-TTTTA-GGGTCA
1 AAAATGGAA-TTTTTAAAAGTTTCAGGGGT-A
* ** *
20016 AAAATGGATTTTTTGGAAGTTTC-GAGGTA
1 AAAATGGAATTTTTAAAAGTTTCAGGGGTA
* *
20045 AAAATGGAA-TTTTAGGAAGTTTCAAGGGTA
1 AAAATGGAATTTTTA-AAAGTTTCAGGGGTA
**
20075 AAAATGGAATTTTTGGAAGTTTCGAGGG
1 AAAATGGAATTTTTAAAAGTTTC-AGGG
20103 ACCTCCAGGG
Statistics
Matches: 240, Mismatches: 39, Indels: 30
0.78 0.13 0.10
Matches are distributed among these distances:
28 8 0.03
29 88 0.37
30 126 0.52
31 18 0.08
ACGTcount: A:0.35, C:0.03, G:0.27, T:0.35
Consensus pattern (30 bp):
AAAATGGAATTTTTAAAAGTTTCAGGGGTA
Found at i:19852 original size:89 final size:87
Alignment explanation
Indices: 19766--20096 Score: 359
Period size: 89 Copynumber: 3.7 Consensus size: 87
19756 TAATTTTGAG
* *
19766 AGTTTTGAGGTCGAAAATGGAGATTTTAGAAG-TTCGAGGGTAAAAAT-GAGATTTTTAAAAGTT
1 AGTTTTGAGGT-AAAAATGGA-ATTTTAGAAGTTTCGAGGGTAAAAATGGA-ATTTTTGAAAGTT
19829 TTATGGGTAAAAATGGAATTTTTGGA
63 TTA-GGGTAAAAATGGAATTTTTGGA
* * * *
19855 AGTTTCAGGGGTAAAAATGGAATCTTTCA-AAGTTTCGA-GGTAAAAAGGGAATTTTTGGAAGTT
1 AGTTT-TGAGGTAAAAATGGAAT-TTT-AGAAGTTTCGAGGGTAAAAATGGAATTTTTGAAAGTT
* * * *
19918 TTGGGGGTAAAAAGGGAATTTTTTGT
63 TT-AGGGTAAAAATGGAATTTTTGGA
* *
19944 TGTTTTG-GGTTAAAAATGGAATTTTTGAAAGTTTCGAGGGTAAAAATGGAATTTTTTGAAA-TT
1 AGTTTTGAGG-TAAAAATGGAATTTTAG-AAGTTTCGAGGGTAAAAATGGAA-TTTTTGAAAGTT
*
20007 TTAGGGTCAAAAATGGATTTTTTGGA
63 TTAGGGT-AAAAATGGAATTTTTGGA
* * *
20033 AGTTTCGAGGTAAAAATGGAATTTTAGGAAGTTTCAAGGGTAAAAATGGAATTTTTGGAAGTTT
1 AGTTTTGAGGTAAAAATGGAATTTTA-GAAGTTTCGAGGGTAAAAATGGAATTTTTGAAAGTTT
20097 CGAGGGACCT
Statistics
Matches: 202, Mismatches: 25, Indels: 30
0.79 0.10 0.12
Matches are distributed among these distances:
87 5 0.02
88 36 0.18
89 138 0.68
90 23 0.11
ACGTcount: A:0.34, C:0.03, G:0.27, T:0.36
Consensus pattern (87 bp):
AGTTTTGAGGTAAAAATGGAATTTTAGAAGTTTCGAGGGTAAAAATGGAATTTTTGAAAGTTTTA
GGGTAAAAATGGAATTTTTGGA
Found at i:21193 original size:18 final size:18
Alignment explanation
Indices: 21167--21231 Score: 53
Period size: 18 Copynumber: 3.7 Consensus size: 18
21157 ATTAATACTT
* *
21167 ATTACTATTATTACTGTC
1 ATTAGTATTATTAATGTC
* *
21185 ATTAGTATTACTAATGTT
1 ATTAGTATTATTAATGTC
* *
21203 ATTAGTAATATTTAT-T-
1 ATTAGTATTATTAATGTC
*
21219 ATTATTATTATTA
1 ATTAGTATTATTA
21232 TTGATATTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
16 10 0.27
17 1 0.03
18 26 0.70
ACGTcount: A:0.34, C:0.06, G:0.06, T:0.54
Consensus pattern (18 bp):
ATTAGTATTATTAATGTC
Found at i:21916 original size:11 final size:11
Alignment explanation
Indices: 21900--21925 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
21890 GGACTTCTTT
21900 AATTCAATTTA
1 AATTCAATTTA
21911 AATTCAATTTA
1 AATTCAATTTA
21922 AATT
1 AATT
21926 TAAACTTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (11 bp):
AATTCAATTTA
Found at i:21925 original size:6 final size:6
Alignment explanation
Indices: 21905--21945 Score: 50
Period size: 6 Copynumber: 7.2 Consensus size: 6
21895 TCTTTAATTC
* *
21905 AATTTA AA-TTC AATTTA AATTTA AACTT- AATTTA AATTTA A
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA A
21946 GCTTTAAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
5 8 0.28
6 21 0.72
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (6 bp):
AATTTA
Found at i:21927 original size:17 final size:17
Alignment explanation
Indices: 21905--21945 Score: 66
Period size: 17 Copynumber: 2.4 Consensus size: 17
21895 TCTTTAATTC
21905 AATTTAAA-TTCAATTTA
1 AATTTAAACTT-AATTTA
21922 AATTTAAACTTAATTTA
1 AATTTAAACTTAATTTA
21939 AATTTAA
1 AATTTAA
21946 GCTTTAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 21 0.91
18 2 0.09
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (17 bp):
AATTTAAACTTAATTTA
Found at i:22690 original size:206 final size:206
Alignment explanation
Indices: 22324--22729 Score: 605
Period size: 206 Copynumber: 2.0 Consensus size: 206
22314 TTTGGTTTCA
* **
22324 TTGACTTGGCCTTCTTCTCAGTATCTCATCAAGAAGACGACCATATCACTTGTTTTGATCCACTT
1 TTGACTTGGCCTTCTTCTCAATATCTCATCAAGAAGACGACCATATCACTTGTTTCAATCCACTT
* * * * * *
22389 CTTTGTGTTTCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATTTCAACAGGAAGCTAACCAT
66 CTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAATATCTCAACAGGAAGCTAACCAT
* *
22454 TTTATTGCTTCGACCTGCTTCTCAGTATCTCATTAGGAAGCTGGGATTCGAAGATTTGCTCACAT
131 TTTATTGCTTCGACATGCTTCTCAGTATCTCATCAGGAAGCTGGGATTCGAAGATTTGCTCACAT
22519 CGAGCGTGGGT
196 CGAGCGTGGGT
* * * * * * *
22530 TTGATTTGGTCTTCTTCTCAATATCTCATTAGGAAGATGACCGTATCGCTTGTTTCAATCCACTT
1 TTGACTTGGCCTTCTTCTCAATATCTCATCAAGAAGACGACCATATCACTTGTTTCAATCCACTT
* * *
22595 CTCTGTATCTCATTAGGAAGATGAATTTGGTCCACTTCTCAATATCTCATCAGGAAGCTAACCAT
66 CTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAATATCTCAACAGGAAGCTAACCAT
* *
22660 TTTATTGCTTCGACATGCTTCTCGGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACAT
131 TTTATTGCTTCGACATGCTTCTCAGTATCTCATCAGGAAGCTGGGATTCGAAGATTTGCTCACAT
22725 CGAGC
196 CGAGC
22730 CCTGAGTTGG
Statistics
Matches: 177, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
206 177 1.00
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.35
Consensus pattern (206 bp):
TTGACTTGGCCTTCTTCTCAATATCTCATCAAGAAGACGACCATATCACTTGTTTCAATCCACTT
CTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAATATCTCAACAGGAAGCTAACCAT
TTTATTGCTTCGACATGCTTCTCAGTATCTCATCAGGAAGCTGGGATTCGAAGATTTGCTCACAT
CGAGCGTGGGT
Found at i:34909 original size:30 final size:30
Alignment explanation
Indices: 34869--35257 Score: 424
Period size: 30 Copynumber: 13.1 Consensus size: 30
34859 TAGAAGTTCG
* *
34869 GGGGTAAAAATAGG-ATTTTTGAAAGTTTTA
1 GGGGTAAAAAT-GGAATTTTTGGAAGTTTTC
*
34899 GGGGTTAAAATGGAATTTTTGGAAG-TTTC
1 GGGGTAAAAATGGAATTTTTGGAAGTTTTC
*
34928 GGGGTAAAAATGGAATTTTTGAAAG-TTTC
1 GGGGTAAAAATGGAATTTTTGGAAGTTTTC
*
34957 GAGGGTAAAAATAGAATTTTTGGAAG-TTTC
1 G-GGGTAAAAATGGAATTTTTGGAAGTTTTC
* *
34987 GAGGTAAAAAGGGAATTTTTGGAAG-TTTC
1 GGGGTAAAAATGGAATTTTTGGAAGTTTTC
*
35016 GGGGGTAAAAAATGGAATTTTTGAAAGTTTT-
1 -GGGGT-AAAAATGGAATTTTTGGAAGTTTTC
** *
35047 GGGGTCAAAAATAAAATTTTTGAAAGTTTT-
1 GGGGT-AAAAATGGAATTTTTGGAAGTTTTC
** * *
35077 AAGGTTAAAATGGAATTTTTGAAAG-TTTC
1 GGGGTAAAAATGGAATTTTTGGAAGTTTTC
* *
35106 GGGGTAGAAAGGGAATTTTTGGAAG-TTTC
1 GGGGTAAAAATGGAATTTTTGGAAGTTTTC
* *
35135 GAGGGTAAAAATGAAATTTTTGGAAGTTTTA
1 G-GGGTAAAAATGGAATTTTTGGAAGTTTTC
* *
35166 TGGGTAAAAATAGAATTTTTGGAAGTTTT-
1 GGGGTAAAAATGGAATTTTTGGAAGTTTTC
*
35195 GGGGTCATAAATGGAATTTTTGGAAG-TTTC
1 GGGGT-AAAAATGGAATTTTTGGAAGTTTTC
*
35225 AGGGTAAAAATGGAATTTTTGGAAG-TTTC
1 GGGGTAAAAATGGAATTTTTGGAAGTTTTC
35254 GGGG
1 GGGG
35258 GACCTCCAGG
Statistics
Matches: 309, Mismatches: 40, Indels: 21
0.84 0.11 0.06
Matches are distributed among these distances:
28 3 0.01
29 132 0.43
30 150 0.49
31 21 0.07
32 3 0.01
ACGTcount: A:0.34, C:0.03, G:0.28, T:0.35
Consensus pattern (30 bp):
GGGGTAAAAATGGAATTTTTGGAAGTTTTC
Found at i:34909 original size:59 final size:60
Alignment explanation
Indices: 34846--35252 Score: 426
Period size: 59 Copynumber: 6.9 Consensus size: 60
34836 TTTGAGGTCG
* * *
34846 AAAATGGAGA-TTTTAGAAG-TTCGGGGGTAAAAATAGG-ATTTTTGAAAGTTTTAGGGGTT
1 AAAATGGA-ATTTTTGGAAGTTTC-GGGGTAAAAATAGGAATTTTTGGAAGTTTTAGGGGTA
* *
34905 AAAATGGAATTTTTGGAAGTTTCGGGGTAAAAAT-GGAATTTTTGAAAG-TTTCGAGGGTA
1 AAAATGGAATTTTTGGAAGTTTCGGGGTAAAAATAGGAATTTTTGGAAGTTTTAG-GGGTA
* * * **
34964 AAAATAGAATTTTTGGAAGTTTCGAGGTAAAAA-GGGAATTTTTGGAAGTTTCGGGGGTAA
1 AAAATGGAATTTTTGGAAGTTTCGGGGTAAAAATAGGAATTTTTGGAAGTTTTAGGGGT-A
* * * * * *
35024 AAAATGGAATTTTTGAAAGTTTTGGGGTCAAAAATA-AAATTTTTGAAAGTTTTA-AGGTT
1 AAAATGGAATTTTTGGAAGTTTCGGGGT-AAAAATAGGAATTTTTGGAAGTTTTAGGGGTA
* * * *
35083 AAAATGGAATTTTTGAAAGTTTCGGGGTAGAAA-GGGAATTTTTGGAAG-TTTCGAGGGTA
1 AAAATGGAATTTTTGGAAGTTTCGGGGTAAAAATAGGAATTTTTGGAAGTTTTAG-GGGTA
* **
35142 AAAATGAAATTTTTGGAAGTTTTATGGGTAAAAATA-GAATTTTTGGAAGTTTT-GGGGTCA
1 AAAATGGAATTTTTGGAAG-TTTCGGGGTAAAAATAGGAATTTTTGGAAGTTTTAGGGGT-A
* *
35202 TAAATGGAATTTTTGGAAGTTTCAGGGTAAAAAT-GGAATTTTTGGAAGTTT
1 AAAATGGAATTTTTGGAAGTTTCGGGGTAAAAATAGGAATTTTTGGAAGTTT
35253 CGGGGGACCT
Statistics
Matches: 294, Mismatches: 37, Indels: 34
0.81 0.10 0.09
Matches are distributed among these distances:
57 3 0.01
58 22 0.07
59 170 0.58
60 77 0.26
61 22 0.07
ACGTcount: A:0.35, C:0.02, G:0.28, T:0.35
Consensus pattern (60 bp):
AAAATGGAATTTTTGGAAGTTTCGGGGTAAAAATAGGAATTTTTGGAAGTTTTAGGGGTA
Found at i:36374 original size:18 final size:18
Alignment explanation
Indices: 36348--36412 Score: 53
Period size: 18 Copynumber: 3.7 Consensus size: 18
36338 ATTAAAACTT
* *
36348 ATTACTATTATTACTGTC
1 ATTAGTATTATTAATGTC
* *
36366 ATTAGTATTACTAATGTT
1 ATTAGTATTATTAATGTC
* *
36384 ATTAGTAATATTTAT-T-
1 ATTAGTATTATTAATGTC
*
36400 ATTATTATTATTA
1 ATTAGTATTATTA
36413 TTATTGATAT
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
16 10 0.27
17 1 0.03
18 26 0.70
ACGTcount: A:0.34, C:0.06, G:0.06, T:0.54
Consensus pattern (18 bp):
ATTAGTATTATTAATGTC
Found at i:36403 original size:3 final size:3
Alignment explanation
Indices: 36395--36443 Score: 73
Period size: 3 Copynumber: 16.3 Consensus size: 3
36385 TTAGTAATAT
*
36395 TTA TTA TTA TTA TTA TTA TTA TTGA -TA TTA TTG TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA
36440 TTA T
1 TTA T
36444 GACTAAAGGT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
2 1 0.02
3 40 0.95
4 1 0.02
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:37085 original size:11 final size:11
Alignment explanation
Indices: 37066--37111 Score: 56
Period size: 11 Copynumber: 4.1 Consensus size: 11
37056 GGACTTCTTT
*
37066 AATTCAATTTA
1 AATTAAATTTA
37077 AATTAAATTTA
1 AATTAAATTTA
*
37088 AATTTAAACTTA
1 AA-TTAAATTTA
*
37100 ATTTAAATTTA
1 AATTAAATTTA
37111 A
1 A
37112 GCTTTAAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
11 21 0.70
12 9 0.30
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (11 bp):
AATTAAATTTA
Found at i:37088 original size:6 final size:6
Alignment explanation
Indices: 37071--37111 Score: 59
Period size: 6 Copynumber: 7.2 Consensus size: 6
37061 TCTTTAATTC
*
37071 AATTTA AA-TTA AATTTA AATTTA AACTT- AATTTA AATTTA A
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA A
37112 GCTTTAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
5 9 0.29
6 22 0.71
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (6 bp):
AATTTA
Found at i:37093 original size:17 final size:17
Alignment explanation
Indices: 37071--37111 Score: 66
Period size: 17 Copynumber: 2.4 Consensus size: 17
37061 TCTTTAATTC
37071 AATTTAAA-TTAAATTTA
1 AATTTAAACTT-AATTTA
37088 AATTTAAACTTAATTTA
1 AATTTAAACTTAATTTA
37105 AATTTAA
1 AATTTAA
37112 GCTTTAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 21 0.91
18 2 0.09
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (17 bp):
AATTTAAACTTAATTTA
Found at i:37150 original size:17 final size:17
Alignment explanation
Indices: 37066--37150 Score: 64
Period size: 17 Copynumber: 4.8 Consensus size: 17
37056 GGACTTCTTT
*
37066 AATTCAATTTAAA-TTA
1 AATTAAATTTAAACTTA
37082 AATTTAAATTTAAACTTA
1 AA-TTAAATTTAAACTTA
* *
37100 ATTTAAATTTAAGCTTTAAA
1 AATTAAATTTAAAC-TT--A
**
37120 AAGGAAAGTTTAAACTTA
1 AATTAAA-TTTAAACTTA
*
37138 AATCAAATTTAAA
1 AATTAAATTTAAA
37151 TGACTAAAAT
Statistics
Matches: 54, Mismatches: 9, Indels: 11
0.73 0.12 0.15
Matches are distributed among these distances:
16 2 0.04
17 27 0.50
18 12 0.22
20 7 0.13
21 6 0.11
ACGTcount: A:0.51, C:0.06, G:0.05, T:0.39
Consensus pattern (17 bp):
AATTAAATTTAAACTTA
Found at i:37775 original size:29 final size:30
Alignment explanation
Indices: 37749--37804 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
37739 GGGTAAAACA
* *
37749 GTAA-TTTTGGACACTTGGGGGCAAAAAAG
1 GTAATTTTTGAACACTTGAGGGCAAAAAAG
*
37778 GTAATTTTTGAACATTTGAGGGCAAAA
1 GTAATTTTTGAACACTTGAGGGCAAAA
37805 TTGTATTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
29 4 0.17
30 19 0.83
ACGTcount: A:0.36, C:0.09, G:0.27, T:0.29
Consensus pattern (30 bp):
GTAATTTTTGAACACTTGAGGGCAAAAAAG
Found at i:37916 original size:30 final size:29
Alignment explanation
Indices: 37772--38075 Score: 134
Period size: 30 Copynumber: 10.5 Consensus size: 29
37762 CTTGGGGGCA
* * * *
37772 AAAAAGGTAATTTTT-GAACATTTGAGGGC
1 AAAAATGTAATTTTTAGAA-GTTCGAGGGT
* * * *
37801 AAAATTGTATTTTTTGGAAGTT-TAGGGT
1 AAAAATGTAATTTTTAGAAGTTCGAGGGT
* *
37829 -AAAATGGTAATCTTTGGAAGTTCG-GGAGT
1 AAAAAT-GTAATTTTTAGAAGTTCGAGG-GT
** * * *
37858 AAAACGGTAATTTTTGAAAAATT-TAGGGTT
1 AAAAATGTAATTTTT-AGAAGTTCGAGGG-T
37888 AAAAATG-ATATTTTTAGAAGTTCGAGGGT
1 AAAAATGTA-ATTTTTAGAAGTTCGAGGGT
* * *
37917 --AAATGTTAATTTTTGGAAGTTTGGGGGT
1 AAAAATG-TAATTTTTAGAAGTTCGAGGGT
* *
37945 AAAAATGTGATTGTTTAGAAGTT-TAGGGGT
1 AAAAATGTAATT-TTTAGAAGTTCGA-GGGT
*
37975 --AAATGGTAA-TTTTAGGAAGTTCGAGGGC
1 AAAAAT-GTAATTTTTA-GAAGTTCGAGGGT
*
38003 AAAAATGTAATTTTT-GTAAAGTTTG-GGGT
1 AAAAATGTAATTTTTAG--AAGTTCGAGGGT
* * * *
38032 CAAAATGTGATTTTTGAGAAGTT-TAAGGT
1 AAAAATGTAATTTTT-AGAAGTTCGAGGGT
38061 CAAAAATGTAATTTT
1 -AAAAATGTAATTTT
38076 GGAAAGTTTA
Statistics
Matches: 207, Mismatches: 40, Indels: 55
0.69 0.13 0.18
Matches are distributed among these distances:
27 13 0.06
28 52 0.25
29 69 0.33
30 72 0.35
31 1 0.00
ACGTcount: A:0.34, C:0.03, G:0.26, T:0.37
Consensus pattern (29 bp):
AAAAATGTAATTTTTAGAAGTTCGAGGGT
Found at i:37919 original size:59 final size:58
Alignment explanation
Indices: 37845--37987 Score: 141
Period size: 58 Copynumber: 2.4 Consensus size: 58
37835 GTAATCTTTG
*
37845 GAAGTTCGGGAGTAAAACGGTAATTTTTGAAAAATTTAGGGTTAAAAATGAT-ATT-TTTA
1 GAAGTTCGGGAGT-AAACGGTAATTTTTG-AAAATTTAGGGGTAAAAATG-TGATTGTTTA
* * * * *
37904 GAAGTTCGAGG-GTAAATGTTAATTTTTGGAAGTTTGGGGGTAAAAATGTGATTGTTTA
1 GAAGTTCG-GGAGTAAACGGTAATTTTTGAAAATTTAGGGGTAAAAATGTGATTGTTTA
* *
37962 GAAGTTTAGGG-GTAAATGGTAATTTT
1 GAAG-TTCGGGAGTAAACGGTAATTTT
37988 AGGAAGTTCG
Statistics
Matches: 72, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
56 1 0.01
57 19 0.26
58 37 0.51
59 13 0.18
60 2 0.03
ACGTcount: A:0.34, C:0.02, G:0.27, T:0.37
Consensus pattern (58 bp):
GAAGTTCGGGAGTAAACGGTAATTTTTGAAAATTTAGGGGTAAAAATGTGATTGTTTA
Found at i:37921 original size:87 final size:86
Alignment explanation
Indices: 37772--37949 Score: 209
Period size: 87 Copynumber: 2.1 Consensus size: 86
37762 CTTGGGGGCA
* * * *
37772 AAAAAGGTAATTTTTGAACATTTGAGGGCAAAATTGTATTTTTTGGAAGTTTAGGGTAAAATGGT
1 AAAAAGGTAATTTTTGAAAATTTGAGGGCAAAAATGTATTTTTTAGAAGTTGAGGGTAAAATGGT
37837 AATCTTTGGAAGTTCGGGAGT
66 AATCTTTGGAAGTTCGGGAGT
* *
37858 AAAACGGTAATTTTTGAAAAATTT-AGGGTTAAAAATG-ATATTTTTAGAAGTTCGAGGGT-AAA
1 AAAAAGGTAATTTTTG-AAAATTTGAGGG-CAAAAATGTAT-TTTTTAGAAGTT-GAGGGTAAAA
* * * *
37920 TGTTAATTTTTGGAAGTTTGGGGGT
62 TGGTAATCTTTGGAAGTTCGGGAGT
37945 AAAAA
1 AAAAA
37950 TGTGATTGTT
Statistics
Matches: 77, Mismatches: 11, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
86 21 0.27
87 51 0.66
88 5 0.06
ACGTcount: A:0.35, C:0.03, G:0.25, T:0.36
Consensus pattern (86 bp):
AAAAAGGTAATTTTTGAAAATTTGAGGGCAAAAATGTATTTTTTAGAAGTTGAGGGTAAAATGGT
AATCTTTGGAAGTTCGGGAGT
Found at i:37927 original size:58 final size:58
Alignment explanation
Indices: 37863--37987 Score: 148
Period size: 58 Copynumber: 2.2 Consensus size: 58
37853 GGAGTAAAAC
*
37863 GGTAATTTTTGAAAAATTTAGGGTTAAAAATGAT-ATT-TTTAGAAGTTCGA-GGGTAAAT
1 GGTAATTTTTG-AAAATTTAGGGGTAAAAATG-TGATTGTTTAGAAGTT-GAGGGGTAAAT
* * * * *
37921 GTTAATTTTTGGAAGTTTGGGGGTAAAAATGTGATTGTTTAGAAGTTTAGGGGTAAAT
1 GGTAATTTTTGAAAATTTAGGGGTAAAAATGTGATTGTTTAGAAGTTGAGGGGTAAAT
37979 GGTAATTTT
1 GGTAATTTT
37988 AGGAAGTTCG
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
56 1 0.02
57 20 0.35
58 36 0.63
ACGTcount: A:0.33, C:0.01, G:0.26, T:0.40
Consensus pattern (58 bp):
GGTAATTTTTGAAAATTTAGGGGTAAAAATGTGATTGTTTAGAAGTTGAGGGGTAAAT
Found at i:37970 original size:87 final size:86
Alignment explanation
Indices: 37811--38068 Score: 247
Period size: 87 Copynumber: 3.0 Consensus size: 86
37801 AAAATTGTAT
* * * * * ** *
37811 TTTTTGGAAGTT-TAGGGTAAAATGGTAATCTTTGGAAGTTCGGGAGTAAAACGGTAATTTTTGA
1 TTTTTAGAAGTTCGAGGGT-AAAT-GTAATTTTTGGAAGTTTGGGGGTAAAAATGTGATTTTTGA
* *
37875 AAAATTTAGGGTTAAAAATGATA
64 GAAGTTTAGGGTTAAAAATGATA
37898 TTTTTAGAAGTTCGAGGGTAAATGTTAATTTTTGGAAGTTTGGGGGTAAAAATGTGATTGTTT-A
1 TTTTTAGAAGTTCGAGGGTAAATG-TAATTTTTGGAAGTTTGGGGGTAAAAATGTGATT-TTTGA
* *
37962 GAAGTTTAGGGGT--AAATGGTA
64 GAAGTTTAGGGTTAAAAATGATA
* * * *
37983 ATTTTAGGAAGTTCGAGGGCAAAAATGTAATTTTTGTAAAGTTT-GGGGTCAAAATGTGATTTTT
1 TTTTTA-GAAGTTCGAGGG--TAAATGTAATTTTTG-GAAGTTTGGGGGTAAAAATGTGATTTTT
* *
38047 GAGAAGTTTAAGGTCAAAAATG
62 GAGAAGTTTAGGGTTAAAAATG
38069 TAATTTTGGA
Statistics
Matches: 142, Mismatches: 19, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
85 12 0.08
86 16 0.11
87 90 0.63
88 19 0.13
89 5 0.04
ACGTcount: A:0.33, C:0.03, G:0.27, T:0.36
Consensus pattern (86 bp):
TTTTTAGAAGTTCGAGGGTAAATGTAATTTTTGGAAGTTTGGGGGTAAAAATGTGATTTTTGAGA
AGTTTAGGGTTAAAAATGATA
Found at i:37993 original size:58 final size:55
Alignment explanation
Indices: 37882--38031 Score: 158
Period size: 58 Copynumber: 2.6 Consensus size: 55
37872 TGAAAAATTT
* * * *
37882 AGGGTTAAAAATGATATTTTTAGAAGTTCGAGGGTAAATGTTAATTTTTGGAAGTTTG
1 AGGG-TAAAAATG-TATTTTTAGAAGTTTG-GGGTAAATGGTAATTTTAGGAAGTTCG
*
37940 GGGGTAAAAATGTGATTGTTTAGAAGTTTAGGGGTAAATGGTAATTTTAGGAAGTTCG
1 AGGGTAAAAATGT-ATT-TTTAGAAGTTT-GGGGTAAATGGTAATTTTAGGAAGTTCG
*
37998 AGGGCAAAAATGTAATTTTT-GTAAAGTTTGGGGT
1 AGGGTAAAAATGT-ATTTTTAG--AAGTTTGGGGT
38032 CAAAATGTGA
Statistics
Matches: 79, Mismatches: 8, Indels: 11
0.81 0.08 0.11
Matches are distributed among these distances:
56 2 0.03
57 19 0.24
58 57 0.72
59 1 0.01
ACGTcount: A:0.32, C:0.02, G:0.29, T:0.37
Consensus pattern (55 bp):
AGGGTAAAAATGTATTTTTAGAAGTTTGGGGTAAATGGTAATTTTAGGAAGTTCG
Found at i:38012 original size:29 final size:29
Alignment explanation
Indices: 37792--38088 Score: 111
Period size: 29 Copynumber: 10.3 Consensus size: 29
37782 TTTTTGAACA
* * *
37792 TTTGAGGGCAAAATTGTATTTTTTGGAAG
1 TTTGAGGGCAAAAATGTAATTTTAGGAAG
*
37821 TTT-AGGG-TAAAATGGTAATCTTT-GGAAG
1 TTTGAGGGCAAAAAT-GTAAT-TTTAGGAAG
* * ** * * *
37849 TTCG-GGAGTAAAACGGTAATTTTTGAAAAA
1 TTTGAGG-GCAAAAATGTAATTTTAG-GAAG
* *
37879 TTT-AGGGTTAAAAATGATATTTTTA-GAAG
1 TTTGAGGG-CAAAAATG-TAATTTTAGGAAG
* * *
37908 TTCGAGGG--TAAATGTTAATTTTTGGAAG
1 TTTGAGGGCAAAAATG-TAATTTTAGGAAG
* * *
37936 TTTGGGGGTAAAAATGTGATTGTTTA-GAAG
1 TTTGAGGGCAAAAATGT-AAT-TTTAGGAAG
**
37966 TTT-AGGG-GTAAATGGTAATTTTAGGAAG
1 TTTGAGGGCAAAAAT-GTAATTTTAGGAAG
* * *
37994 TTCGAGGGCAAAAATGTAATTTTTGTAAAG
1 TTTGAGGGCAAAAATGTAATTTTAG-GAAG
* *
38024 TTTG-GGGTC-AAAATGTGATTTTTGAGAAG
1 TTTGAGGG-CAAAAATGTAATTTTAG-GAAG
* *
38053 TTTAAGGTCAAAAATGTAATTTT-GGAAAG
1 TTTGAGGGCAAAAATGTAATTTTAGG-AAG
38082 TTT-AGGG
1 TTTGAGGG
38089 GTCAAAATAT
Statistics
Matches: 200, Mismatches: 43, Indels: 51
0.68 0.15 0.17
Matches are distributed among these distances:
27 19 0.09
28 46 0.23
29 68 0.34
30 58 0.29
31 9 0.05
ACGTcount: A:0.33, C:0.03, G:0.27, T:0.37
Consensus pattern (29 bp):
TTTGAGGGCAAAAATGTAATTTTAGGAAG
Found at i:38092 original size:30 final size:30
Alignment explanation
Indices: 37917--38095 Score: 121
Period size: 30 Copynumber: 6.1 Consensus size: 30
37907 GTTCGAGGGT
*
37917 AAATGTTAATTTTTGG-AAGTTTGGGGGT-AA
1 AAATG-TAA-TTTTGGAAAGTTTAGGGGTCAA
* *
37947 AAATGTGATTGTT-TAGAAGTTTAGGGGT---
1 AAATGTAATT-TTGGA-AAGTTTAGGGGTCAA
*
37975 AAATGGTAATTTTAGG-AAG-TTCGAGGG-CAA
1 AAAT-GTAATTTT-GGAAAGTTTAG-GGGTCAA
*
38005 AAATGTAATTTTTGTAAAGTTT-GGGGTC-A
1 AAATGTAA-TTTTGGAAAGTTTAGGGGTCAA
* * *
38034 AAATGTGATTTTTGAGAAGTTTA-AGGTCAA
1 AAATGTAATTTTGGA-AAGTTTAGGGGTCAA
38064 AAATGTAATTTTGGAAAGTTTAGGGGTCAA
1 AAATGTAATTTTGGAAAGTTTAGGGGTCAA
38094 AA
1 AA
38096 TATGATTTCT
Statistics
Matches: 117, Mismatches: 14, Indels: 36
0.70 0.08 0.22
Matches are distributed among these distances:
27 3 0.03
28 19 0.16
29 42 0.36
30 51 0.44
31 2 0.02
ACGTcount: A:0.34, C:0.03, G:0.27, T:0.36
Consensus pattern (30 bp):
AAATGTAATTTTGGAAAGTTTAGGGGTCAA
Found at i:38095 original size:29 final size:29
Alignment explanation
Indices: 37917--38096 Score: 117
Period size: 29 Copynumber: 6.1 Consensus size: 29
37907 GTTCGAGGGT
* *
37917 AAATGTTAATTTTTGG-AAGTTTGGGGGTAA
1 AAATG-TAA-TTTTGGAAAGTTTAGGGGTCA
* *
37947 AAATGTGATTGTT-TAGAAGTTTAGGGGT--
1 AAATGTAATT-TTGGA-AAGTTTAGGGGTCA
*
37975 AAATGGTAATTTTAGG-AAG-TTCGAGGG-CAA
1 AAAT-GTAATTTT-GGAAAGTTTAG-GGGTC-A
*
38005 AAATGTAATTTTTGTAAAGTTT-GGGGTCA
1 AAATGTAA-TTTTGGAAAGTTTAGGGGTCA
* * *
38034 AAATGTGATTTTTGAGAAGTTTA-AGGTCAA
1 AAATGTAATTTTGGA-AAGTTTAGGGGTC-A
38064 AAATGTAATTTTGGAAAGTTTAGGGGTCA
1 AAATGTAATTTTGGAAAGTTTAGGGGTCA
38093 AAAT
1 AAAT
38097 ATGATTTCTG
Statistics
Matches: 118, Mismatches: 14, Indels: 37
0.70 0.08 0.22
Matches are distributed among these distances:
27 3 0.03
28 19 0.16
29 47 0.40
30 47 0.40
31 2 0.02
ACGTcount: A:0.34, C:0.03, G:0.27, T:0.36
Consensus pattern (29 bp):
AAATGTAATTTTGGAAAGTTTAGGGGTCA
Found at i:39945 original size:17 final size:17
Alignment explanation
Indices: 39923--40012 Score: 108
Period size: 17 Copynumber: 5.3 Consensus size: 17
39913 TTTTTATTAC
*
39923 AAAATAAATTTAAATTT
1 AAAATAAATTTAAACTT
*
39940 AAAATAAATTTAAACTC
1 AAAATAAATTTAAACTT
* *
39957 CAAATAAGTTTAAACTT
1 AAAATAAATTTAAACTT
*
39974 ACAATAAATTTAAACTT
1 AAAATAAATTTAAACTT
* * *
39991 AAAATGAATTAAAATTT
1 AAAATAAATTTAAACTT
40008 AAAAT
1 AAAAT
40013 CTAAAATTGA
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 61 1.00
ACGTcount: A:0.57, C:0.07, G:0.02, T:0.34
Consensus pattern (17 bp):
AAAATAAATTTAAACTT
Found at i:40946 original size:14 final size:16
Alignment explanation
Indices: 40921--40957 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
40911 AATCTAGAAA
*
40921 AAAAATATAAA-TTAT
1 AAAAATATAAATTTAC
40936 AAAAATA-AAATTTAC
1 AAAAATATAAATTTAC
40951 AAAAATA
1 AAAAATA
40958 CAATAATTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 3 0.15
15 17 0.85
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (16 bp):
AAAAATATAAATTTAC
Found at i:41024 original size:15 final size:14
Alignment explanation
Indices: 41001--41061 Score: 63
Period size: 15 Copynumber: 4.3 Consensus size: 14
40991 ATATTAGTAC
41001 AAAAATGTAAAAAT
1 AAAAATGTAAAAAT
41015 AAAAACTGTAAAAAT
1 AAAAA-TGTAAAAAT
41030 AAAAAAATG-AAAAA-
1 --AAAAATGTAAAAAT
* *
41044 AAAAGTTTAAAAAT
1 AAAAATGTAAAAAT
41058 AAAA
1 AAAA
41062 GAAATTAGTT
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
12 5 0.12
13 5 0.12
14 9 0.22
15 14 0.35
16 2 0.05
17 5 0.12
ACGTcount: A:0.74, C:0.02, G:0.07, T:0.18
Consensus pattern (14 bp):
AAAAATGTAAAAAT
Found at i:41047 original size:28 final size:30
Alignment explanation
Indices: 41001--41066 Score: 82
Period size: 28 Copynumber: 2.2 Consensus size: 30
40991 ATATTAGTAC
41001 AAAAATGTAAAAATAAAAACTGTAAAAATAA
1 AAAAATG-AAAAATAAAAACTGTAAAAATAA
* *
41032 AAAAATG-AAAA-AAAAAGTTTAAAAATAA
1 AAAAATGAAAAATAAAAACTGTAAAAATAA
41060 AAGAAAT
1 AA-AAAT
41067 TAGTTGAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
28 17 0.53
29 8 0.25
31 7 0.22
ACGTcount: A:0.73, C:0.02, G:0.08, T:0.18
Consensus pattern (30 bp):
AAAAATGAAAAATAAAAACTGTAAAAATAA
Found at i:44486 original size:30 final size:30
Alignment explanation
Indices: 44441--44703 Score: 196
Period size: 30 Copynumber: 8.8 Consensus size: 30
44431 TTTTGAGAAT
*
44441 TTTA-GGGTTAAAATGTAATTTTAGGAAAG
1 TTTAGGGGTCAAAATGTAATTTTAGGAAAG
44470 TTTAGGGGTCAAAATGTAATTTT-GGAAAAG
1 TTTAGGGGTCAAAATGTAATTTTAGG-AAAG
* * *
44500 TTTAGGAGTTAAAATGTGATTTTAGGAAAG
1 TTTAGGGGTCAAAATGTAATTTTAGGAAAG
** * * *
44530 TTTAAGGGGAAAAAATATGATTTTAGGGAAG
1 TTT-AGGGGTCAAAATGTAATTTTAGGAAAG
* * * *
44561 -TTCGAGGTCAAAATGTGATTTT-GGAAAAA
1 TTTAGGGGTCAAAATGTAATTTTAGG-AAAG
* * * *
44590 TTTAAGGGTTAAAATGTAATTTTAGAAAAA
1 TTTAGGGGTCAAAATGTAATTTTAGGAAAG
* ***
44620 TTTAAGGGTCAAAATGTAATTTTTTTTAAAG
1 TTTAGGGGTCAAAATGTAA-TTTTAGGAAAG
* * *
44651 TTTGGGGGAT-AAAATATAATTTT-GGAAAAT
1 TTTAGGGG-TCAAAATGTAATTTTAGG-AAAG
* *
44681 TTTAGTGGTCAAAATGCAATTTT
1 TTTAGGGGTCAAAATGTAATTTT
44704 TGAAAAGTGT
Statistics
Matches: 186, Mismatches: 37, Indels: 21
0.76 0.15 0.09
Matches are distributed among these distances:
28 2 0.01
29 24 0.13
30 113 0.61
31 46 0.25
32 1 0.01
ACGTcount: A:0.38, C:0.02, G:0.23, T:0.37
Consensus pattern (30 bp):
TTTAGGGGTCAAAATGTAATTTTAGGAAAG
Found at i:44522 original size:60 final size:58
Alignment explanation
Indices: 44441--44703 Score: 217
Period size: 60 Copynumber: 4.4 Consensus size: 58
44431 TTTTGAGAAT
* *
44441 TTTAGGGTTAAAATGTAATTTTAGGAAAGTTTAGGGGTCAAAATGTAATTTTGGAAAAG
1 TTTAGGGTCAAAATGTAATTTTAGGAAAGTTTAGGGGT-AAAATATAATTTTGGAAAAG
* * * * *
44500 TTTAGGAGTTAAAATGTGATTTTAGGAAAGTTTAAGGGGAAAAAATATGATTTTAGG-GAAG
1 TTTAGG-GTCAAAATGTAATTTTAGGAAAGTTT-AGGGG-TAAAATATAATTTT-GGAAAAG
* * * * * * *
44561 -TTCGAGGTCAAAATGTGATTTT-GGAAAAATTTAAGGGTTAAAATGTAATTTTAGAAAAA
1 TTTAG-GGTCAAAATGTAATTTTAGG-AAAGTTT-AGGGGTAAAATATAATTTTGGAAAAG
*** * *
44620 TTTAAGGGTCAAAATGTAATTTTTTTTAAAGTTTGGGGGATAAAATATAATTTTGGAAAAT
1 TTT-AGGGTCAAAATGTAA-TTTTAGGAAAGTTTAGGGG-TAAAATATAATTTTGGAAAAG
*
44681 TTTAGTGGTCAAAATGCAATTTT
1 TTTAG-GGTCAAAATGTAATTTT
44704 TGAAAAGTGT
Statistics
Matches: 165, Mismatches: 26, Indels: 25
0.76 0.12 0.12
Matches are distributed among these distances:
58 1 0.01
59 21 0.13
60 77 0.47
61 64 0.39
62 2 0.01
ACGTcount: A:0.38, C:0.02, G:0.23, T:0.37
Consensus pattern (58 bp):
TTTAGGGTCAAAATGTAATTTTAGGAAAGTTTAGGGGTAAAATATAATTTTGGAAAAG
Found at i:44604 original size:90 final size:91
Alignment explanation
Indices: 44458--44627 Score: 245
Period size: 90 Copynumber: 1.9 Consensus size: 91
44448 TTAAAATGTA
* * *
44458 ATTTTAGGAAAGTTTAGGGGTCAAAATGTAATTTTGGAAAAGTTTAGGAGTTAAAATGTGATTTT
1 ATTTTAGGAAAGTTTAGAGGTCAAAATGTAATTTTGGAAAAATTTAGGAGTTAAAATGTAATTTT
* *
44523 AGGAAAGTTTAAGGGGAAAAAATATG
66 AGAAAAATTTAAGGGGAAAAAATATG
* * *
44549 ATTTTAGGGAAG-TTCGAGGTCAAAATGTGATTTTGGAAAAATTTAAGG-GTTAAAATGTAATTT
1 ATTTTAGGAAAGTTTAGAGGTCAAAATGTAATTTTGGAAAAATTT-AGGAGTTAAAATGTAATTT
44612 TAGAAAAATTTAAGGG
65 TAGAAAAATTTAAGGG
44628 TCAAAATGTA
Statistics
Matches: 70, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
90 56 0.80
91 14 0.20
ACGTcount: A:0.39, C:0.02, G:0.25, T:0.34
Consensus pattern (91 bp):
ATTTTAGGAAAGTTTAGAGGTCAAAATGTAATTTTGGAAAAATTTAGGAGTTAAAATGTAATTTT
AGAAAAATTTAAGGGGAAAAAATATG
Found at i:44652 original size:90 final size:90
Alignment explanation
Indices: 44444--44735 Score: 270
Period size: 91 Copynumber: 3.2 Consensus size: 90
44434 TGAGAATTTT
* * * *
44444 AGGGTTAAAATGTAA-TTTTAGGAAAGTTTAGGGGTCAAAATGTAATTTTGGAAAAGTTTAGGAG
1 AGGGTAAAAATGTAATTTTTAGGAAAGTTTCGAGGTCAAAATGTAATTTTGGAAAAATTTAGG-G
* *
44508 TTAAAATGTGATTTTAGGAAAGTTTA
65 TTAAAATGTAATTTTAGAAAAGTTTA
* * * * *
44534 AGGGGAAAAAATATGA-TTTTAGGGAAG-TTCGAGGTCAAAATGTGATTTTGGAAAAATTTAAGG
1 A-GGGTAAAAATGTAATTTTTAGGAAAGTTTCGAGGTCAAAATGTAATTTTGGAAAAATTT-AGG
*
44597 GTTAAAATGTAATTTTAGAAAAATTTA
64 GTTAAAATGTAATTTTAGAAAAGTTTA
* *** * * * *
44624 AGGGTCAAAATGTAATTTTTTTTAAAGTTTGGGGGAT-AAAATATAATTTTGGAAAATTTTAGTG
1 AGGGTAAAAATGTAATTTTTAGGAAAGTTTCGAGG-TCAAAATGTAATTTTGGAAAAATTTAG-G
* * * *
44688 GTCAAAATGCAATTTTTGAAAAGTGTGA
64 GTTAAAATGTAATTTTAGAAAAGT-TTA
*
44716 A-GGTTAAAATGTAATTTTTA
1 AGGGTAAAAATGTAATTTTTA
44736 AATAAAACAA
Statistics
Matches: 163, Mismatches: 32, Indels: 13
0.78 0.15 0.06
Matches are distributed among these distances:
89 10 0.06
90 63 0.39
91 86 0.53
92 4 0.02
ACGTcount: A:0.39, C:0.02, G:0.23, T:0.36
Consensus pattern (90 bp):
AGGGTAAAAATGTAATTTTTAGGAAAGTTTCGAGGTCAAAATGTAATTTTGGAAAAATTTAGGGT
TAAAATGTAATTTTAGAAAAGTTTA
Found at i:44709 original size:30 final size:29
Alignment explanation
Indices: 44438--44733 Score: 177
Period size: 30 Copynumber: 9.9 Consensus size: 29
44428 AGTTTTTGAG
* *
44438 AATTTTAGGGTTAAAATGTAATTTTAGGAA
1 AATTTAAGGGTCAAAATGTAATTTT-GGAA
* *
44468 AGTTTAGGGGTCAAAATGTAATTTTGGAA
1 AATTTAAGGGTCAAAATGTAATTTTGGAA
* *
44497 AAGTTT-AGGAGTTAAAATGTGATTTTAGGAA
1 AA-TTTAAGG-GTCAAAATGTAATTTT-GGAA
* ** * * *
44528 AGTTTAAGGGGAAAAAATATGATTTTAGGGA
1 AATTTAA-GGGTCAAAATGTAATTTT-GGAA
* ** *
44559 AGTTCGA-GGTCAAAATGTGATTTTGGAAA
1 AATTTAAGGGTCAAAATGTAATTTTGG-AA
* *
44588 AATTTAAGGGTTAAAATGTAATTTTAGAAA
1 AATTTAAGGGTCAAAATGTAATTTT-GGAA
**
44618 AATTTAAGGGTCAAAATGTAATTTTTTTTAA
1 AATTTAAGGGTCAAAATGTAA--TTTTGGAA
* ** *
44649 AGTTTGGGGGAT-AAAATATAATTTTGGAA
1 AATTTAAGGG-TCAAAATGTAATTTTGGAA
* * *
44678 AATTTTAGTGGTCAAAATGCAATTTTTGAA
1 AATTTAAG-GGTCAAAATGTAATTTTGGAA
* *
44708 AAGTGTGAA-GGTTAAAATGTAATTTT
1 AA-T-TTAAGGGTCAAAATGTAATTTT
44734 TAAATAAAAC
Statistics
Matches: 207, Mismatches: 44, Indels: 30
0.74 0.16 0.11
Matches are distributed among these distances:
28 2 0.01
29 38 0.18
30 111 0.54
31 47 0.23
32 9 0.04
ACGTcount: A:0.39, C:0.02, G:0.23, T:0.36
Consensus pattern (29 bp):
AATTTAAGGGTCAAAATGTAATTTTGGAA
Found at i:45465 original size:16 final size:15
Alignment explanation
Indices: 45445--45497 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 15
45435 AAATCTATCA
45445 TTTTTTATTTGATTT-
1 TTTTTTATTT-ATTTG
*
45460 TATTTTTATTAAATTTG
1 T-TTTTTATT-TATTTG
*
45477 TTTTTTATTTATTTC
1 TTTTTTATTTATTTG
45492 TTTTTT
1 TTTTTT
45498 CGAAATCTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
15 11 0.34
16 20 0.62
17 1 0.03
ACGTcount: A:0.17, C:0.02, G:0.04, T:0.77
Consensus pattern (15 bp):
TTTTTTATTTATTTG
Found at i:46920 original size:123 final size:125
Alignment explanation
Indices: 46607--46932 Score: 394
Period size: 124 Copynumber: 2.6 Consensus size: 125
46597 GCTTCATCTC
* * * *
46607 TTGGTCTACTTCTCTGTATCTCATTAGGAAGATGACCGCTTTATTGCTTCGACCCACTTCTCTGT
1 TTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCACTTTATTGCTTTGACCCACTTCTTTGT
* * ***
46672 ATCTCATCA-AGAAGATGGGGTTTGAAGCTTTACTCACATTGAACTTTGTTTCATTTGAT
66 ATCTCATCAGAGAAGATAGGGTTTGAAGCTTCACTCACATTGAACTTCACTTCATTTGAT
* * * *
46731 TTGGTCTACTTCTCTGTATCTCATCAAGAAAATAACCTCTTTATTGCTTTGACCCACTT-TTCTG
1 TTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCACTTTATTGCTTTGACCCACTTCTT-TG
* ** *
46795 TATCTCATCAGA-AAGATAGGGTTTGAAG-TCTCATTCGTATTGAGCTTCACTTCA-TTGAT
65 TATCTCATCAGAGAAGATAGGGTTTGAAGCT-TCACTCACATTGAACTTCACTTCATTTGAT
* * * * *
46854 TTGGTCTACTTCTCTGTATCACATCAGGAAGATGACCACTTCATTGATTTAATCCACTTCTTTGT
1 TTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCACTTTATTGCTTTGACCCACTTCTTTGT
46919 ATCTCATCAG-GAAG
66 ATCTCATCAGAGAAG
46933 GCGGATTTAG
Statistics
Matches: 172, Mismatches: 25, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
123 73 0.42
124 98 0.57
125 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (125 bp):
TTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCACTTTATTGCTTTGACCCACTTCTTTGT
ATCTCATCAGAGAAGATAGGGTTTGAAGCTTCACTCACATTGAACTTCACTTCATTTGAT
Found at i:46949 original size:37 final size:37
Alignment explanation
Indices: 46899--46969 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 37
46889 CCACTTCATT
*
46899 GATTTAATCCACTTCTTTGTATCTCATCAGGAAGGCG
1 GATTTAATCCACTTCTCTGTATCTCATCAGGAAGGCG
* *
46936 GATTTAGTCCACTTCTCTGTATCTCATTAGGAAG
1 GATTTAATCCACTTCTCTGTATCTCATCAGGAAG
46970 ATGGGGTTCG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37
Consensus pattern (37 bp):
GATTTAATCCACTTCTCTGTATCTCATCAGGAAGGCG
Found at i:47066 original size:160 final size:159
Alignment explanation
Indices: 46784--47303 Score: 693
Period size: 160 Copynumber: 3.2 Consensus size: 159
46774 TTGCTTTGAC
* * * * *
46784 CCACTTTTCTGTATCTCATCAGAAAGATAGGGTTTGAAGTCTCATTCGTATTGAGCTTCACTTCA
1 CCACTTCTCTGTATCTCATCAGGAAGATGGGGTTCGAAGTCTCATTCGTATTGAGCTTCGCTTCA
* * * *
46849 TTGATTTGGTCTACTTCTCTGTATCACATCAGGAAGATGACCACTTCATTGATTTAATCCACTTC
66 TTAATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCATTGATTTAATCCACTTC
46914 TTTGTATCTCATCAGGAAGGCGGATTTAGT
131 TTTGTATCTCATCAGGAAGGC-GATTTAGT
* *
46944 CCACTTCTCTGTATCTCATTAGGAAGATGGGGTTCGAAGTTTCATTCGTATTGAGCTTCGCTTCA
1 CCACTTCTCTGTATCTCATCAGGAAGATGGGGTTCGAAGTCTCATTCGTATTGAGCTTCGCTTCA
* *
47009 TTAATTTGGTCTACTTCTCTGTATCTCATTAGGAAGATGACCGCCTCATTAATTTAATCCACTT-
66 TTAATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCATTGATTTAATCCACTTC
* * *
47073 TTCTGTATCTTATCAAGAAGATGATCGCTTTATTGCTTT
131 TT-TGTATCTCATCAGGAAG--G--CGATTTA--G---T
* *
47112 GACCCACTTCTTTGTATCTCATCAAGAAGATGGGGTTCGAAGTCTCATTCGTATTGAGCTTCGCT
1 ---CCACTTCTCTGTATCTCATCAGGAAGATGGGGTTCGAAGTCTCATTCGTATTGAGCTTCGCT
* *
47177 TCATTAATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGATCGCCTCATTGATTTAATCCA-
63 TCATTAATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCATTGATTTAATCCAC
*
47241 TATCTTTGTATCTCATCAGGAAGGCAGATTTGGT
128 T-TCTTTGTATCTCATCAGGAAGGC-GATTTAGT
47275 CCACTTCTCTGTATCTCATCAGGAAGATG
1 CCACTTCTCTGTATCTCATCAGGAAGATG
47304 ACCGCTTTAT
Statistics
Matches: 314, Mismatches: 30, Indels: 32
0.84 0.08 0.09
Matches are distributed among these distances:
159 2 0.01
160 158 0.50
162 1 0.00
163 6 0.02
164 1 0.00
165 1 0.00
166 1 0.00
167 1 0.00
168 5 0.02
169 1 0.00
170 1 0.00
171 134 0.43
172 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (159 bp):
CCACTTCTCTGTATCTCATCAGGAAGATGGGGTTCGAAGTCTCATTCGTATTGAGCTTCGCTTCA
TTAATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCATTGATTTAATCCACTTC
TTTGTATCTCATCAGGAAGGCGATTTAGT
Found at i:47253 original size:171 final size:171
Alignment explanation
Indices: 46944--47263 Score: 518
Period size: 171 Copynumber: 1.9 Consensus size: 171
46934 CGGATTTAGT
* * *
46944 CCACTTCTCTGTATCTCATTAGGAAGATGGGGTTCGAAGTTTCATTCGTATTGAGCTTCGCTTCA
1 CCACTTCTCTGTATCTCATCAAGAAGATGGGGTTCGAAGTCTCATTCGTATTGAGCTTCGCTTCA
* *
47009 TTAATTTGGTCTACTTCTCTGTATCTCATTAGGAAGATGACCGCCTCATTAATTTAATCCACTTT
66 TTAATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCGCCTCATTAATTTAATCCACTTT
*
47074 TCTGTATCTTATCAAGAAGATGATCGCTTTATTGCTTTGAC
131 TCTGTATCTCATCAAGAAGATGATCGCTTTATTGCTTTGAC
*
47115 CCACTTCTTTGTATCTCATCAAGAAGATGGGGTTCGAAGTCTCATTCGTATTGAGCTTCGCTTCA
1 CCACTTCTCTGTATCTCATCAAGAAGATGGGGTTCGAAGTCTCATTCGTATTGAGCTTCGCTTCA
* *
47180 TTAATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGATCGCCTCATTGATTTAATCCA-TAT
66 TTAATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCGCCTCATTAATTTAATCCACT-T
*
47244 CTT-TGTATCTCATCAGGAAG
130 -TTCTGTATCTCATCAAGAAG
47264 GCAGATTTGG
Statistics
Matches: 137, Mismatches: 10, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
170 1 0.01
171 134 0.98
172 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.39
Consensus pattern (171 bp):
CCACTTCTCTGTATCTCATCAAGAAGATGGGGTTCGAAGTCTCATTCGTATTGAGCTTCGCTTCA
TTAATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCGCCTCATTAATTTAATCCACTTT
TCTGTATCTCATCAAGAAGATGATCGCTTTATTGCTTTGAC
Found at i:47271 original size:37 final size:37
Alignment explanation
Indices: 47230--47300 Score: 99
Period size: 37 Copynumber: 1.9 Consensus size: 37
47220 TCGCCTCATT
*
47230 GATTTAATCCA-TATCTTTGTATCTCATCAGGAAGGCA
1 GATTTAATCCACT-TCTCTGTATCTCATCAGGAAGGCA
**
47267 GATTTGGTCCACTTCTCTGTATCTCATCAGGAAG
1 GATTTAATCCACTTCTCTGTATCTCATCAGGAAG
47301 ATGACCGCTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
37 29 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.35
Consensus pattern (37 bp):
GATTTAATCCACTTCTCTGTATCTCATCAGGAAGGCA
Found at i:47321 original size:208 final size:208
Alignment explanation
Indices: 47066--47547 Score: 765
Period size: 208 Copynumber: 2.3 Consensus size: 208
47056 ATTAATTTAA
* * * *
47066 TCCACTTTTCTGTATCTTATCAAGAAGATGATCGCTTTATTGCTTTGACCCACTTCTTTGTATCT
1 TCCACTTCTCTGTATCTCATCAGGAAGATGATCGCTTTATTGCTTTGACCCACTTCTCTGTATCT
* *
47131 CATCAAGAAGATGGGGTTCGAAGTCTCATTCGTATTGAGCTTCGCTTCATTAATTTGGTCTACTT
66 CATCAAGAAGATAGGGTTCGAAGTCTCATTCGTATTGAGCTTCGCTTCATTAATTTGGTATACTT
* *
47196 CTCTGTATCTCATCAAGAAGATGA-TCGCCTCATTGATTTAATCCA-TATCTTTGTATCTCATCA
131 CTCTGTATCTCATCAAGAAGATGACT-GCCTCATTGATTTAATCCACT-TCTCTATATCTCATCA
*
47259 GGAAGGCAGATTTGG
194 AGAAGGCAGATTTGG
*
47274 TCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCACTTCTCTGTATCT
1 TCCACTTCTCTGTATCTCATCAGGAAGATGATCGCTTTATTGCTTTGACCCACTTCTCTGTATCT
* * * * *
47339 CATCAAGAAGATAGGGTTGGAAGTCTCATTTGTTTTGAGCTTCGCTTTATTGATTTGGTATACTT
66 CATCAAGAAGATAGGGTTCGAAGTCTCATTCGTATTGAGCTTCGCTTCATTAATTTGGTATACTT
47404 CTCTGTATCTCATCAAGAAGATGACTGCCTCATTGATTTAATCCACTTCTCTATATCTCATCAAG
131 CTCTGTATCTCATCAAGAAGATGACTGCCTCATTGATTTAATCCACTTCTCTATATCTCATCAAG
47469 AAGGCAGATTTGG
196 AAGGCAGATTTGG
* *
47482 TCCACTTCT-TTTATCTCATC-GGAAGATGATCGCTTTATTGCTTTGACCTACTTCTCTGTATCT
1 TCCACTTCTCTGTATCTCATCAGGAAGATGATCGCTTTATTGCTTTGACCCACTTCTCTGTATCT
47545 CAT
66 CAT
47548 TGGGAAGGCG
Statistics
Matches: 254, Mismatches: 18, Indels: 6
0.91 0.06 0.02
Matches are distributed among these distances:
206 44 0.17
207 10 0.04
208 198 0.78
209 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.39
Consensus pattern (208 bp):
TCCACTTCTCTGTATCTCATCAGGAAGATGATCGCTTTATTGCTTTGACCCACTTCTCTGTATCT
CATCAAGAAGATAGGGTTCGAAGTCTCATTCGTATTGAGCTTCGCTTCATTAATTTGGTATACTT
CTCTGTATCTCATCAAGAAGATGACTGCCTCATTGATTTAATCCACTTCTCTATATCTCATCAAG
AAGGCAGATTTGG
Found at i:47336 original size:85 final size:85
Alignment explanation
Indices: 47183--47348 Score: 226
Period size: 85 Copynumber: 2.0 Consensus size: 85
47173 CGCTTCATTA
* * * *
47183 ATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGATCGCCTCATTGATTTAATCCATATCTTT
1 ATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACCGCCTCATTGATTTAACCCATATCTCT
*
47248 GTATCTCATCAGGAAGGCAG
66 GTATCTCATCAAGAAGGCAG
* * * * *
47268 ATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACCCACT-TCTC
1 ATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACCGCCTCATTGATTTAACCCA-TATCTC
47332 TGTATCTCATCAAGAAG
65 TGTATCTCATCAAGAAG
47349 ATAGGGTTGG
Statistics
Matches: 70, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
85 69 0.99
86 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.36
Consensus pattern (85 bp):
ATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACCGCCTCATTGATTTAACCCATATCTCT
GTATCTCATCAAGAAGGCAG
Found at i:47623 original size:85 final size:83
Alignment explanation
Indices: 47390--47638 Score: 277
Period size: 83 Copynumber: 3.0 Consensus size: 83
47380 TCGCTTTATT
** * * * * *
47390 GATTTGGTATACTTCTCTGTATCTCATCAAGAAGATGA-CTGCCTCATTGATTTAATCCACTTCT
1 GATTTGGTCCACTTCTCTGTATCTCATC-AGAAGATGATC-GCTTTATTGCTTTGACCCACTTCT
* *
47454 CTATATCTCATCAAGAAGGCA
64 CT-TATCTCATTAGGAAGGCA
* * *
47475 GATTTGGTCCACTTCT-TTTATCTCATCGGAAGATGATCGCTTTATTGCTTTGACCTACTTCTCT
1 GATTTGGTCCACTTCTCTGTATCTCATCAGAAGATGATCGCTTTATTGCTTTGACCCACTTCTCT
* *
47539 GTATCTCATTGGGAAGGCG
66 -TATCTCATTAGGAAGGCA
* * *
47558 GATTTGTTCCACTTCTCTGTATCTCATCAGTAATATGATCGCTTTATTGCTTTGACCCAATTCTC
1 GATTTGGTCCACTTCTCTGTATCTCATCAG-AAGATGATCGCTTTATTGCTTTGACCCACTTCTC
*
47623 TTATCTCATTTGGAAG
65 TTATCTCATTAGGAAG
47639 ATGAGGTTTG
Statistics
Matches: 139, Mismatches: 22, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
83 57 0.41
84 36 0.26
85 46 0.33
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.39
Consensus pattern (83 bp):
GATTTGGTCCACTTCTCTGTATCTCATCAGAAGATGATCGCTTTATTGCTTTGACCCACTTCTCT
TATCTCATTAGGAAGGCA
Found at i:47696 original size:498 final size:500
Alignment explanation
Indices: 47066--48053 Score: 1540
Period size: 498 Copynumber: 2.0 Consensus size: 500
47056 ATTAATTTAA
* * * *
47066 TCCACTTTTCTGTATCTTATCAAGAAGATGATCGCTTTATTGCTTTGACCCACTTCTTTGTATCT
1 TCCACTTCTCTGTATCTCATCAAGAAGATGATCGCTTTATTGCTTTGACCCAATTCTCTGTATCT
*
47131 CATCAAGAAGATGGGGTTCGAAGTCTCATTCGTATTGAGCTTCGCTTCATTAATTTGGTCTACTT
66 CATCAAGAAGATGAGGTTCGAAGTCTCATTCGTATTGAGCTTCGCTTCATTAATTTGGTCTACTT
*
47196 CTCTGTATCTCATCAAGAAGATGA-TCGCCTCATTGATTTAATCCA-TATCTTTGTATCTCATCA
131 CTCTGTATCTCATCAAGAAGATGACT-GCCTCATTGACTTAATCCACT-TCTTTGTATCTCATCA
* *
47259 GGAAGGCAGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTGCTTTGACC
194 AGAAGGCAGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTACTTTGACC
* * * * * *
47324 CACTTCTCTGTATCTCATCAAGAAGATAGGGTTGGAAGTCTCATTTGTTTTGAGCTTCGCTTTAT
259 CACTTCTCTGTATCTCATCAAGAAGATAAGGTTCGAAGTCTCATTCGTATTAAGCTTCGCTTCAT
*
47389 TGATTTGGTATACTTCTCTGTATCTCATCAAGAAGATGACTGCCTCATTGATTTAATCCACTTCT
324 TGATTTGGTATACTTCTCTGTATCTCATCAAAAAGATGACTGCCTCATTGATTTAATCCACTTCT
* *
47454 CTATATCTCATCAAGAAGGCAGATTTGGTCCACTTCTT-T-TATCTCATC-GGAAGATGATCGCT
389 CTATATCTCATCAAGAAGGCAGATTTGGTACACTT-TTCTGTATCTCATCAGGAAGATGACCGCT
* *
47516 TTATTGCTTTGACCTACTTCTCTGTATCTCATTGGGAAGGCGGATTTGT
453 TTATTGCTTTGACCCAATTCTCT-TATCTCATTGGGAAGGCGGATTTGT
*
47565 TCCACTTCTCTGTATCTCATC-AGTAATATGATCGCTTTATTGCTTTGACCCAATTCTCT-TATC
1 TCCACTTCTCTGTATCTCATCAAG-AAGATGATCGCTTTATTGCTTTGACCCAATTCTCTGTATC
*** * * *
47628 TCATTTGGAAGATGAGGTTTGAAGTCTCATTTGTATTGAGCTTCGCTTCATTGATTTGGTCTACT
65 TCATCAAGAAGATGAGGTTCGAAGTCTCATTCGTATTGAGCTTCGCTTCATTAATTTGGTCTACT
* *
47693 TCTCTTTATCTCATCAAGAAGATGACTGCCTTATTGACTTAATCCACTTCTTTGTATCTCATCAA
130 TCTCTGTATCTCATCAAGAAGATGACTGCCTCATTGACTTAATCCACTTCTTTGTATCTCATCAA
*
47758 GAAGGCGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTACTTTGACCC
195 GAAGGCAGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTACTTTGACCC
*
47823 ACTTCTCTGTATCTCATCAAGAAGATAAGGTTCGAAGTCTCATTCGTATTAAGCTTTGCTTCATT
260 ACTTCTCTGTATCTCATCAAGAAGATAAGGTTCGAAGTCTCATTCGTATTAAGCTTCGCTTCATT
*
47888 GATTTGGTCTACTTCTCTGTATCTCATCAAAAAGATGACTGCCTCATTGATTTAATCCACTTCTC
325 GATTTGGTATACTTCTCTGTATCTCATCAAAAAGATGACTGCCTCATTGATTTAATCCACTTCTC
* * * * * *
47953 TGTATCTCATTAGGAAGGCGGATTTGGTATACTTTTCTGTATCTCATCAGTAAGATGACCGCTTT
390 TATATCTCATCAAGAAGGCAGATTTGGTACACTTTTCTGTATCTCATCAGGAAGATGACCGCTTT
*
48018 ATTGCTTTGACCCAATTCTCTTATCTCATTTGGAAG
455 ATTGCTTTGACCCAATTCTCTTATCTCATTGGGAAG
48054 ATGGGGTTTG
Statistics
Matches: 445, Mismatches: 38, Indels: 12
0.90 0.08 0.02
Matches are distributed among these distances:
497 2 0.00
498 334 0.75
499 76 0.17
500 33 0.07
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.39
Consensus pattern (500 bp):
TCCACTTCTCTGTATCTCATCAAGAAGATGATCGCTTTATTGCTTTGACCCAATTCTCTGTATCT
CATCAAGAAGATGAGGTTCGAAGTCTCATTCGTATTGAGCTTCGCTTCATTAATTTGGTCTACTT
CTCTGTATCTCATCAAGAAGATGACTGCCTCATTGACTTAATCCACTTCTTTGTATCTCATCAAG
AAGGCAGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTACTTTGACCCA
CTTCTCTGTATCTCATCAAGAAGATAAGGTTCGAAGTCTCATTCGTATTAAGCTTCGCTTCATTG
ATTTGGTATACTTCTCTGTATCTCATCAAAAAGATGACTGCCTCATTGATTTAATCCACTTCTCT
ATATCTCATCAAGAAGGCAGATTTGGTACACTTTTCTGTATCTCATCAGGAAGATGACCGCTTTA
TTGCTTTGACCCAATTCTCTTATCTCATTGGGAAGGCGGATTTGT
Found at i:47737 original size:290 final size:292
Alignment explanation
Indices: 47183--47846 Score: 960
Period size: 290 Copynumber: 2.3 Consensus size: 292
47173 CGCTTCATTA
* * * * * * *
47183 ATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGATCGCCTCATTGATTTAATCCA-TATCTT
1 ATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGATCGCTTTATTGCTTTGA-CCACT-TCTC
47247 TGTATCTCATCAGGAAGGCAGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTT
64 TGTATCTCATCAGGAAGGCAGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTT
* *
47312 ATTGCTTTGACCCACTTCTCTGTATCTCATCAAGAAGATAGGGTTGGAAGTCTCATTTGTTTTGA
129 ATTGCTTTGACCCAATTCTCTGTATCTCATCAAGAAGATAGGGTTGGAAGTCTCATTTGTATTGA
* *
47377 GCTTCGCTTTATTGATTTGGTATACTTCTCTGTATCTCATCAAGAAGATGACTGCCTCATTGATT
194 GCTTCGCTTCATTGATTTGGTATACTTCTCTGTATCTCATCAAGAAGATGACTGCCTCATTGACT
47442 TAATCCACTTCTCTATATCTCATCAAGAAGGCAG
259 TAATCCACTTCTCTATATCTCATCAAGAAGGCAG
*
47476 ATTTGGTCCACTTCT-TTTATCTCATC-GGAAGATGATCGCTTTATTGCTTTGACCTACTTCTCT
1 ATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGATCGCTTTATTGCTTTGACC-ACTTCTCT
** * * * * *
47539 GTATCTCATTGGGAAGGCGGATTTGTTCCACTTCTCTGTATCTCATCAGTAATATGATCGCTTTA
65 GTATCTCATCAGGAAGGCAGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTA
*** *
47604 TTGCTTTGACCCAATTCTCT-TATCTCATTTGGAAGAT-GAGGTTTGAAGTCTCATTTGTATTGA
130 TTGCTTTGACCCAATTCTCTGTATCTCATCAAGAAGATAG-GGTTGGAAGTCTCATTTGTATTGA
* * *
47667 GCTTCGCTTCATTGATTTGGTCTACTTCTCTTTATCTCATCAAGAAGATGACTGCCTTATTGACT
194 GCTTCGCTTCATTGATTTGGTATACTTCTCTGTATCTCATCAAGAAGATGACTGCCTCATTGACT
* * *
47732 TAATCCACTTCTTTGTATCTCATCAAGAAGGCGG
259 TAATCCACTTCTCTATATCTCATCAAGAAGGCAG
* *
47766 ATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATTACTTTGACCCACTTCTCT
1 ATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGATCGCTTTATTGCTTTGA-CCACTTCTCT
*
47831 GTATCTCATCAAGAAG
65 GTATCTCATCAGGAAG
47847 ATAAGGTTCG
Statistics
Matches: 330, Mismatches: 35, Indels: 13
0.87 0.09 0.03
Matches are distributed among these distances:
289 1 0.00
290 144 0.44
291 113 0.34
292 56 0.17
293 16 0.05
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.39
Consensus pattern (292 bp):
ATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGATCGCTTTATTGCTTTGACCACTTCTCTG
TATCTCATCAGGAAGGCAGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTAT
TGCTTTGACCCAATTCTCTGTATCTCATCAAGAAGATAGGGTTGGAAGTCTCATTTGTATTGAGC
TTCGCTTCATTGATTTGGTATACTTCTCTGTATCTCATCAAGAAGATGACTGCCTCATTGACTTA
ATCCACTTCTCTATATCTCATCAAGAAGGCAG
Found at i:47825 original size:85 final size:85
Alignment explanation
Indices: 47680--47846 Score: 246
Period size: 85 Copynumber: 2.0 Consensus size: 85
47670 TCGCTTCATT
* * * * *
47680 GATTTGGTCTACTTCTCTTTATCTCATCAAGAAGATGACTGCCTTATTGACTTAATCCACTTCTT
1 GATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACCGCCTTATTGACTTAACCCACTTCTC
47745 TGTATCTCATCAAGAAGGCG
66 TGTATCTCATCAAGAAGGCG
* * *
47765 GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTTATT-ACTTTGACCCACTTCT
1 GATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACCGCCTTATTGAC-TTAACCCACTTCT
47829 CTGTATCTCATCAAGAAG
65 CTGTATCTCATCAAGAAG
47847 ATAAGGTTCG
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
84 2 0.03
85 71 0.97
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (85 bp):
GATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACCGCCTTATTGACTTAACCCACTTCTC
TGTATCTCATCAAGAAGGCG
Found at i:47927 original size:208 final size:207
Alignment explanation
Indices: 47475--48791 Score: 1795
Period size: 207 Copynumber: 6.4 Consensus size: 207
47465 CAAGAAGGCA
* * * * *
47475 GATTTGGTCCACTTCT-TTTATCTCATC-GGAAGATGA-TCGCTTTATTGCTTTGA-CCTACTTC
1 GATTTGGTCTACTTCTCTTTATCTCATCAAGAAGATGACT-GCCTTATTGATTTAATCC-ACTTC
*** * * * *
47536 TCTGTATCTCATTGGGAAGGCGGATTTGTTCCACTTCTCTGTATCTCATCAGTAATATGATCGCT
64 TCTGTATCTCATCAAGAAGGCGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCT
** * *
47601 TTATTGCTTTGACCCAATTCTCTTATCTCATTTGGAAGATGAGGTTTGAAGTCTCATTTGTATTG
129 TTATTGCTTTGACCCAATTCTCTTATCTCATCAGGAAGATAAGGTTTGAAGTCTCATTCGTATTG
47666 AGCTTCGCTTCATT
194 AGCTTCGCTTCATT
* *
47680 GATTTGGTCTACTTCTCTTTATCTCATCAAGAAGATGACTGCCTTATTGACTTAATCCACTTCTT
1 GATTTGGTCTACTTCTCTTTATCTCATCAAGAAGATGACTGCCTTATTGATTTAATCCACTTCTC
47745 TGTATCTCATCAAGAAGGCGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTT
66 TGTATCTCATCAAGAAGGCGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTT
* * * * *
47810 ATTACTTTGACCCACTTCTCTGTATCTCATCAAGAAGATAAGGTTCGAAGTCTCATTCGTATTAA
131 ATTGCTTTGACCCAATTCTCT-TATCTCATCAGGAAGATAAGGTTTGAAGTCTCATTCGTATTGA
*
47875 GCTTTGCTTCATT
195 GCTTCGCTTCATT
* * *
47888 GATTTGGTCTACTTCTCTGTATCTCATCAAAAAGATGACTGCCTCATTGATTTAATCCACTTCTC
1 GATTTGGTCTACTTCTCTTTATCTCATCAAGAAGATGACTGCCTTATTGATTTAATCCACTTCTC
* * ** * *
47953 TGTATCTCATTAGGAAGGCGGATTTGGTATACTTTTCTGTATCTCATCAGTAAGATGACCGCTTT
66 TGTATCTCATCAAGAAGGCGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTT
** **
48018 ATTGCTTTGACCCAATTCTCTTATCTCATTTGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAG
131 ATTGCTTTGACCCAATTCTCTTATCTCATCAGGAAGATAAGGTTTGAAGTCTCATTCGTATTGAG
48083 CTTCGCTTCATT
196 CTTCGCTTCATT
* * * *
48095 GATTTGGTTTACTTCTCTTTATCTCATCAAGAAGATGACTGCCTTATTGAATTGATCCACTTTTC
1 GATTTGGTCTACTTCTCTTTATCTCATCAAGAAGATGACTGCCTTATTGATTTAATCCACTTCTC
* *
48160 TGTATCTCATCAAGAAGGCGGATTTGGTCCACTTCTCTGTATCTCATCATGAAGATGATCGCTTT
66 TGTATCTCATCAAGAAGGCGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTT
* * * *
48225 ATTACTTTGACCCACTTCTCTGTATCTCATCAGGAAGATAAGGTTCGAAGTCTCATTCGTATTAA
131 ATTGCTTTGACCCAATTCTCT-TATCTCATCAGGAAGATAAGGTTTGAAGTCTCATTCGTATTGA
*
48290 GCTTTGCTTCATT
195 GCTTCGCTTCATT
* * * *
48303 GATTTGGTCTACTTCTCTATATCTCATAAAAAAGATGACTGCCTCATTGATTTAATCCACTTCTC
1 GATTTGGTCTACTTCTCTTTATCTCATCAAGAAGATGACTGCCTTATTGATTTAATCCACTTCTC
* * * * * * *
48368 TGTATCTCATTAAGAAGGCGAATTTGGTCTACTTTTTTGTATCTCATCAGTAAGAAGACCGCTTT
66 TGTATCTCATCAAGAAGGCGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTT
* * * *
48433 ACTGCTTTGACCCAATTCTCTTATCTCATTTA-GAAGAT-GGGATTTGAAGTTTCATTCGTATTG
131 ATTGCTTTGACCCAATTCTCTTATCTCA-TCAGGAAGATAAGG-TTTGAAGTCTCATTCGTATTG
48496 AGCTTCGCTTCATT
194 AGCTTCGCTTCATT
* * *
48510 GATTTGGTATACTTCTCTTTATCTCATCAAGAAGATGATTGCCTTATTGATTCAATCCACTTCTC
1 GATTTGGTCTACTTCTCTTTATCTCATCAAGAAGATGACTGCCTTATTGATTTAATCCACTTCTC
* * *
48575 TGTATCTCATCAAGAAGGTGAATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACCGCTTT
66 TGTATCTCATCAAGAAGGCGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTT
*
48640 ATTGCTTTGACCCACTTCTCTGTATCTCATCAGGAAGATAAGGTTTGAAGTCTCATTCGTATTGA
131 ATTGCTTTGACCCAATTCTCT-TATCTCATCAGGAAGATAAGGTTTGAAGTCTCATTCGTATTGA
*
48705 GCTTTGCTTCATT
195 GCTTCGCTTCATT
* * * * * * * *
48718 GATTTGGTCTACTTTTCTGTATCTCATC-AGTAAGATGACCGCTTTATTGCTTTGACCCAATTCT
1 GATTTGGTCTACTTCTCTTTATCTCATCAAG-AAGATGACTGCCTTATTGATTTAATCCACTTCT
48782 CT-TATCTCAT
65 CTGTATCTCAT
48792 TTAGAAGATG
Statistics
Matches: 973, Mismatches: 127, Indels: 22
0.87 0.11 0.02
Matches are distributed among these distances:
205 15 0.02
206 13 0.01
207 474 0.49
208 469 0.48
209 2 0.00
ACGTcount: A:0.23, C:0.21, G:0.16, T:0.40
Consensus pattern (207 bp):
GATTTGGTCTACTTCTCTTTATCTCATCAAGAAGATGACTGCCTTATTGATTTAATCCACTTCTC
TGTATCTCATCAAGAAGGCGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTT
ATTGCTTTGACCCAATTCTCTTATCTCATCAGGAAGATAAGGTTTGAAGTCTCATTCGTATTGAG
CTTCGCTTCATT
Found at i:48030 original size:415 final size:414
Alignment explanation
Indices: 47531--49188 Score: 2149
Period size: 415 Copynumber: 4.1 Consensus size: 414
47521 GCTTTGACCT
** * ** * *
47531 ACTTCTCTGTATCTCATTGGGAAGGCGGATTTGTTCCACTTCTCTGTATCTCATCAGTAATATGA
1 ACTTCTCTGTATCTCATTAAGAAGGCGGATTTGGTATACTTTTCTGTATCTCATCAGTAAGATGA
* *
47596 TCGCTTTATTGCTTTGACCCAATTCTCTTATCTCATTTGGAAGATGAGGTTTGAAGTCTCATTTG
66 CCGCTTTATTGCTTTGACCCAATTCTCTTATCTCATTTGGAAGATGAGGTTTGAAGTCTCATTCG
47661 TATTGAGCTTCGCTTCATTGATTTGGTCTACTTCTCTTTATCTCATCAAGAAGATGACTGCCTTA
131 TATTGAGCTTCGCTTCATTGATTTGGTCTACTTCTCTTTATCTCATCAAGAAGATGACTGCCTTA
*
47726 TTGACTTAATCCACTTCTTTGTATCTCATCAAGAAGGCGGATTTGGTCCACTTCTCTGTATCTCA
196 TTGA-TTAATCCACTTCTCTGTATCTCATCAAGAAGGCGGATTTGGTCCACTTCTCTGTATCTCA
*
47791 TCAGGAAGATGACCGCTTTATTACTTTGACCCACTTCTCTGTATCTCATCAAGAAGATAAGGTTC
260 TCAAGAAGATGACCGCTTTATTACTTTGACCCACTTCTCTGTATCTCATCAAGAAGATAAGGTTC
47856 GAAGTCTCATTCGTATTAAGCTTTGCTTCATTGATTTGGTCTACTTCTCTGTATCTCATCAAAAA
325 GAAGTCTCATTCGTATTAAGCTTTGCTTCATTGATTTGGTCTACTTCTCTGTATCTCATCAAAAA
47921 GATGACTGCCTCATTGATTTAATCC
390 GATGACTGCCTCATTGATTTAATCC
*
47946 ACTTCTCTGTATCTCATTAGGAAGGCGGATTTGGTATACTTTTCTGTATCTCATCAGTAAGATGA
1 ACTTCTCTGTATCTCATTAAGAAGGCGGATTTGGTATACTTTTCTGTATCTCATCAGTAAGATGA
*
48011 CCGCTTTATTGCTTTGACCCAATTCTCTTATCTCATTTGGAAGATGGGGTTTGAAGTCTCATTCG
66 CCGCTTTATTGCTTTGACCCAATTCTCTTATCTCATTTGGAAGATGAGGTTTGAAGTCTCATTCG
*
48076 TATTGAGCTTCGCTTCATTGATTTGGTTTACTTCTCTTTATCTCATCAAGAAGATGACTGCCTTA
131 TATTGAGCTTCGCTTCATTGATTTGGTCTACTTCTCTTTATCTCATCAAGAAGATGACTGCCTTA
* *
48141 TTGAATTGATCCACTTTTCTGTATCTCATCAAGAAGGCGGATTTGGTCCACTTCTCTGTATCTCA
196 TTG-ATTAATCCACTTCTCTGTATCTCATCAAGAAGGCGGATTTGGTCCACTTCTCTGTATCTCA
* * *
48206 TCATGAAGATGATCGCTTTATTACTTTGACCCACTTCTCTGTATCTCATCAGGAAGATAAGGTTC
260 TCAAGAAGATGACCGCTTTATTACTTTGACCCACTTCTCTGTATCTCATCAAGAAGATAAGGTTC
* *
48271 GAAGTCTCATTCGTATTAAGCTTTGCTTCATTGATTTGGTCTACTTCTCTATATCTCATAAAAAA
325 GAAGTCTCATTCGTATTAAGCTTTGCTTCATTGATTTGGTCTACTTCTCTGTATCTCATCAAAAA
48336 GATGACTGCCTCATTGATTTAATCC
390 GATGACTGCCTCATTGATTTAATCC
* * * *
48361 ACTTCTCTGTATCTCATTAAGAAGGCGAATTTGGTCTACTTTTTTGTATCTCATCAGTAAGAAGA
1 ACTTCTCTGTATCTCATTAAGAAGGCGGATTTGGTATACTTTTCTGTATCTCATCAGTAAGATGA
* * *
48426 CCGCTTTACTGCTTTGACCCAATTCTCTTATCTCATTTAGAAGATG-GGATTTGAAGTTTCATTC
66 CCGCTTTATTGCTTTGACCCAATTCTCTTATCTCATTTGGAAGATGAGG-TTTGAAGTCTCATTC
* *
48490 GTATTGAGCTTCGCTTCATTGATTTGGTATACTTCTCTTTATCTCATCAAGAAGATGATTGCCTT
130 GTATTGAGCTTCGCTTCATTGATTTGGTCTACTTCTCTTTATCTCATCAAGAAGATGACTGCCTT
* *
48555 ATTGATTCAATCCACTTCTCTGTATCTCATCAAGAAGGTGAATTTGGTCCACTTCTCTGTATCTC
195 ATTGATT-AATCCACTTCTCTGTATCTCATCAAGAAGGCGGATTTGGTCCACTTCTCTGTATCTC
* *
48620 ATCAAGAAGATGACCGCTTTATTGCTTTGACCCACTTCTCTGTATCTCATCAGGAAGATAAGGTT
259 ATCAAGAAGATGACCGCTTTATTACTTTGACCCACTTCTCTGTATCTCATCAAGAAGATAAGGTT
* * * **
48685 TGAAGTCTCATTCGTATTGAGCTTTGCTTCATTGATTTGGTCTACTTTTCTGTATCTCATCAGTA
324 CGAAGTCTCATTCGTATTAAGCTTTGCTTCATTGATTTGGTCTACTTCTCTGTATCTCATCAAAA
* * * * * *
48750 AGATGACCGCTTTATTGCTTTGACCC
389 AGATGACTGCCTCATTGATTTAATCC
* * * * * * * * *
48776 AATTCTCT-TATCTCATTTAGAAGATG-GGGTTT-G-A-A---GTCT-CAT-TCGT-ATTGAGCT
1 ACTTCTCTGTATCTCATTAAGAAG--GCGGATTTGGTATACTTTTCTGTATCTCATCAGTAAGAT
* * ** ** * * *
48830 --TCGCTTCATTAATTTGGTCTACTTCTCTTTATCTCA--T----CA--A-----GAAG----A-
64 GACCGCTTTATTGCTTTGACCCAATTCTC-TTATCTCATTTGGAAGATGAGGTTTGAAGTCTCAT
* ** * *
48875 ---TA---A-CTGC-CTT-ATTGATTTAATCCACTTCTCTGTATCTCATCAAGAAGATGACTGCC
128 TCGTATTGAGCTTCGCTTCATTGATTTGGTCTACTTCTCTTTATCTCATCAAGAAGATGACTGCC
*
48931 TTATTGATTTAATCCACTTCTCTGTATCTCATCAAGAAGGCAGATTTGGTCCACTTCTCTGTATC
193 TTATTGA-TTAATCCACTTCTCTGTATCTCATCAAGAAGGCGGATTTGGTCCACTTCTCTGTATC
* * * * * * *
48996 TTATCAAGAAGATGATCACTTTATTGCTTTGACCCACTTTTCTGTATCTCATCAAAAAGATGAGG
257 TCATCAAGAAGATGACCGCTTTATTACTTTGACCCACTTCTCTGTATCTCATCAAGAAGATAAGG
* * ** *
49061 TTCTAAGTCTCATTCGTATTGAGCTTCACTTTATTGATTTGGTCTACTTCTCTGTATCTCATCAA
322 TTCGAAGTCTCATTCGTATTAAGCTTTGCTTCATTGATTTGGTCTACTTCTCTGTATCTCATCAA
* * * *
49126 GAAGATGA-TCGCCACATTAATTTAATTC
387 AAAGATGACT-GCCTCATTGATTTAATCC
* * *
49154 ACTTTTCTGTATCTCATCAAGAAGGCGGATATGGT
1 ACTTCTCTGTATCTCATTAAGAAGGCGGATTTGGT
49189 CCACTTCACT
Statistics
Matches: 1119, Mismatches: 111, Indels: 61
0.87 0.09 0.05
Matches are distributed among these distances:
377 1 0.00
378 242 0.22
379 19 0.02
380 3 0.00
381 1 0.00
384 2 0.00
388 1 0.00
392 4 0.00
399 1 0.00
403 1 0.00
404 18 0.02
405 8 0.01
406 4 0.00
407 3 0.00
408 2 0.00
409 2 0.00
412 1 0.00
414 20 0.02
415 784 0.70
416 2 0.00
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (414 bp):
ACTTCTCTGTATCTCATTAAGAAGGCGGATTTGGTATACTTTTCTGTATCTCATCAGTAAGATGA
CCGCTTTATTGCTTTGACCCAATTCTCTTATCTCATTTGGAAGATGAGGTTTGAAGTCTCATTCG
TATTGAGCTTCGCTTCATTGATTTGGTCTACTTCTCTTTATCTCATCAAGAAGATGACTGCCTTA
TTGATTAATCCACTTCTCTGTATCTCATCAAGAAGGCGGATTTGGTCCACTTCTCTGTATCTCAT
CAAGAAGATGACCGCTTTATTACTTTGACCCACTTCTCTGTATCTCATCAAGAAGATAAGGTTCG
AAGTCTCATTCGTATTAAGCTTTGCTTCATTGATTTGGTCTACTTCTCTGTATCTCATCAAAAAG
ATGACTGCCTCATTGATTTAATCC
Found at i:48037 original size:85 final size:84
Alignment explanation
Indices: 47888--48053 Score: 215
Period size: 85 Copynumber: 2.0 Consensus size: 84
47878 TTGCTTCATT
* * * *
47888 GATTTGGTCTACTTCTCTGTATCTCATCAAAAAGATGACTGCCTCATTGATTTAATCCACTTCTC
1 GATTTGGTATACTTCTCTGTATCTCATCAAAAAGATGACCGCCTCATTGATTTAACCCAATTCTC
47953 TGTATCTCATTAGGAAGGCG
66 T-TATCTCATTAGGAAGGCG
* ** * * * *
47973 GATTTGGTATACTTTTCTGTATCTCATCAGTAAGATGACCGCTTTATTGCTTTGACCCAATTCTC
1 GATTTGGTATACTTCTCTGTATCTCATCAAAAAGATGACCGCCTCATTGATTTAACCCAATTCTC
*
48038 TTATCTCATTTGGAAG
66 TTATCTCATTAGGAAG
48054 ATGGGGTTTG
Statistics
Matches: 69, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
84 14 0.20
85 55 0.80
ACGTcount: A:0.23, C:0.21, G:0.16, T:0.39
Consensus pattern (84 bp):
GATTTGGTATACTTCTCTGTATCTCATCAAAAAGATGACCGCCTCATTGATTTAACCCAATTCTC
TTATCTCATTAGGAAGGCG
Found at i:48240 original size:85 final size:85
Alignment explanation
Indices: 48095--48261 Score: 221
Period size: 85 Copynumber: 2.0 Consensus size: 85
48085 TCGCTTCATT
** * * *
48095 GATTTGGTTTACTTCTCTTTATCTCATCAAGAAGATGACTGCCTTATTGAATTGATCCACTTTTC
1 GATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACTGCCTTATTGAATTGACCCACTTCTC
48160 TGTATCTCATCAAGAAGGCG
66 TGTATCTCATCAAGAAGGCG
* * *
48180 GATTTGGTCCACTTCTCTGTATCTCATCATGAAGATGA-TCGCTTTATT-ACTTTGACCCACTTC
1 GATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACT-GCCTTATTGA-ATTGACCCACTTC
*
48243 TCTGTATCTCATCAGGAAG
64 TCTGTATCTCATCAAGAAG
48262 ATAAGGTTCG
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
84 2 0.03
85 69 0.97
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.38
Consensus pattern (85 bp):
GATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACTGCCTTATTGAATTGACCCACTTCTC
TGTATCTCATCAAGAAGGCG
Found at i:48546 original size:330 final size:325
Alignment explanation
Indices: 48180--48925 Score: 787
Period size: 330 Copynumber: 2.3 Consensus size: 325
48170 CAAGAAGGCG
* * * * * *
48180 GATTTGGTCCACTTCTCTGTATCTCATCATGAAGATGATCGCTTTATT-ACTTTGACCCACTTCT
1 GATTTGGTCTACTTCTCTTTATCTCATCAAGAAGATGATCGCCTTATTGA-TTTAATCCACTTCT
* * * ** * **
48244 CTGTATCTCATCAGGAAGAT-AA-GGTTCGAAGTCTC-AT-TCGT-ATTAAGCT-TTGCTTCATT
65 CTGTATCTCATCAAGAAGATGAATGG-TCCAAGTCTCTATCTCATCAAGAAGATACCGCTTCATT
** * *
48303 GATTTGGTCTACTTCTCTATATCTCATAAAAAAGATGACTGCCTCATTGATTTAATC-CACTTC-
129 GATTTGACCCACTTCTCTATATCTCATAAAAAAGAT-A-AG-CT--TTGA---AATCTCA-TTCG
* * *
48366 T-CTGTATCTCATT-AAGAAGGCGAATTTGGTCTACTTTTTTGTATCTCATCAGTAAGAAGACCG
185 TATTG-AGCT--TTGAAGAA-GCG-ATTTGGTCTACTTTTCTGTATCTCATCAGTAAGAAGACCG
*
48429 CTTTACTGCTTTGACCCAATTCTCTTATCTCATTTAGAAGATGGGATTTGAAGTTTCATTCGTAT
245 CTTTACTGCTTTGACCCAATTCTCTTATCTCATTTAGAAGATGGGATTTGAAGTCTCATTCGTAT
48494 TGAGCTTCGCTTCATT
310 TGAGCTTCGCTTCATT
* * *
48510 GATTTGGTATACTTCTCTTTATCTCATCAAGAAGATGATTGCCTTATTGATTCAATCCACTTCTC
1 GATTTGGTCTACTTCTCTTTATCTCATCAAGAAGATGATCGCCTTATTGATTTAATCCACTTCTC
* ** *
48575 TGTATCTCATCAAGAAGGTGAATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACCGCTTT
66 TGTATCTCATCAAGAAGATGAA--TGGTCCAAGTCTC--TATCTCATCAAGAAGAT-ACCGCTTC
* * * ** * *
48640 ATTGCTTTGACCCACTTCTCTGTATCTCATCAGGAAGATAAGGTTTGAAGTCTCATTCGTATTGA
126 ATTGATTTGACCCACTTCTCTATATCTCATAAAAAAGATAAGCTTTGAAATCTCATTCGTATTGA
**** ** * *
48705 GCTTTGCTTCATTGATTTGGTCTACTTTTCTGTATCTCATCAGTAAGATGACCGCTTTATTGCTT
191 GCTTTGAAGAAGCGATTTGGTCTACTTTTCTGTATCTCATCAGTAAGAAGACCGCTTTACTGCTT
*
48770 TGACCCAATTCTCTTATCTCATTTAGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGCT
256 TGACCCAATTCTCTTATCTCATTTAGAAGATGGGATTTGAAGTCTCATTCGTATTGAGCTTCGCT
48835 TCATT
321 TCATT
* *
48840 AATTTGGTCTACTTCTCTTTATCTCATCAAGAAGAT-AACTGCCTTATTGATTTAATCCACTTCT
1 GATTTGGTCTACTTCTCTTTATCTCATCAAGAAGATGATC-GCCTTATTGATTTAATCCACTTCT
48904 CTGTATCTCATCAAGAAGATGA
65 CTGTATCTCATCAAGAAGATGA
48926 CTGCCTTATT
Statistics
Matches: 348, Mismatches: 51, Indels: 34
0.80 0.12 0.08
Matches are distributed among these distances:
329 1 0.00
330 265 0.76
331 6 0.02
332 7 0.02
333 13 0.04
334 4 0.01
335 4 0.01
336 2 0.01
337 4 0.01
338 6 0.02
339 1 0.00
340 35 0.10
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (325 bp):
GATTTGGTCTACTTCTCTTTATCTCATCAAGAAGATGATCGCCTTATTGATTTAATCCACTTCTC
TGTATCTCATCAAGAAGATGAATGGTCCAAGTCTCTATCTCATCAAGAAGATACCGCTTCATTGA
TTTGACCCACTTCTCTATATCTCATAAAAAAGATAAGCTTTGAAATCTCATTCGTATTGAGCTTT
GAAGAAGCGATTTGGTCTACTTTTCTGTATCTCATCAGTAAGAAGACCGCTTTACTGCTTTGACC
CAATTCTCTTATCTCATTTAGAAGATGGGATTTGAAGTCTCATTCGTATTGAGCTTCGCTTCATT
Found at i:48655 original size:85 final size:85
Alignment explanation
Indices: 48511--48676 Score: 233
Period size: 85 Copynumber: 2.0 Consensus size: 85
48501 CGCTTCATTG
* * ** *
48511 ATTTGGTATACTTCTCTTTATCTCATCAAGAAGATGATTGCCTTATTGATTCAATCCACTTCTCT
1 ATTTGGTACACTTCTCTGTATCTCATCAAGAAGATGACCGCCTTATTGATTCAACCCACTTCTCT
48576 GTATCTCATCAAGAAGGTGA
66 GTATCTCATCAAGAAGGTGA
* * * **
48596 ATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACCGCTTTATTGCTTTGACCCACTTCTCT
1 ATTTGGTACACTTCTCTGTATCTCATCAAGAAGATGACCGCCTTATTGATTCAACCCACTTCTCT
*
48661 GTATCTCATCAGGAAG
66 GTATCTCATCAAGAAG
48677 ATAAGGTTTG
Statistics
Matches: 70, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
85 70 1.00
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.37
Consensus pattern (85 bp):
ATTTGGTACACTTCTCTGTATCTCATCAAGAAGATGACCGCCTTATTGATTCAACCCACTTCTCT
GTATCTCATCAAGAAGGTGA
Found at i:48846 original size:122 final size:123
Alignment explanation
Indices: 48595--49133 Score: 545
Period size: 123 Copynumber: 4.3 Consensus size: 123
48585 CAAGAAGGTG
*
48595 AATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACCGCTTTATTGCTTTGACCCACTTCTC
1 AATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCGCTTTATTGCTTTGACCCACTTCTC
* * * *
48660 TGTATCTCATCAGGAAGATAAGGTTTGAAGTCTCATTCGTATTGAGCTTTGCTTCATT
66 TGTATCTCATTAAGAAGATGAGGTTTGAAGTCTCATTCGTATTGAGCTTCGCTTCATT
* * *
48718 GATTTGGTCTACTTTTCTGTATCTCATC-AGTAAGATGACCGCTTTATTGCTTTGACCCAATTCT
1 AATTTGGTCTACTTCTCTGTATCTCATCAAG-AAGATGACCGCTTTATTGCTTTGACCCACTTCT
* *
48782 CT-TATCTCATTTAGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGCTTCATT
65 CTGTATCTCATTAAGAAGATGAGGTTTGAAGTCTCATTCGTATTGAGCTTCGCTTCATT
* * * * * * *
48840 AATTTGGTCTACTTCTCTTTATCTCATCAAGAAGATAACTGCCTTATTGATTTAATCCACTTCTC
1 AATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCGCTTTATTGCTTTGACCCACTTCTC
* * * * *
48905 TGTATCTCATCAAGAAGATGACTGCCTTATTGATTTAATC-CACTTC-T-CTGTATCTCATCAAG
66 TGTATCTCATTAAGAAGATGA--G--GT-TTGA---AGTCTCA-TTCGTATTG-AGCT--TC--G
***
48967 AAGGCA--
117 -CTTCATT
* * * * * *
48973 GATTTGGTCCACTTCTCTGTATCTTATCAAGAAGATGATCACTTTATTGCTTTGACCCACTTTTC
1 AATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCGCTTTATTGCTTTGACCCACTTCTC
* * * *
49038 TGTATCTCATCAAAAAGATGAGGTTCT-AAGTCTCATTCGTATTGAGCTTCACTTTATT
66 TGTATCTCATTAAGAAGATGAGGTT-TGAAGTCTCATTCGTATTGAGCTTCGCTTCATT
*
49096 GATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGA
1 AATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGA
49134 TCGCCACATT
Statistics
Matches: 337, Mismatches: 55, Indels: 48
0.77 0.12 0.11
Matches are distributed among these distances:
121 1 0.00
122 105 0.31
123 113 0.34
124 2 0.01
125 7 0.02
126 6 0.02
127 3 0.01
128 6 0.02
129 4 0.01
130 6 0.02
131 7 0.02
132 2 0.01
133 72 0.21
134 1 0.00
135 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (123 bp):
AATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCGCTTTATTGCTTTGACCCACTTCTC
TGTATCTCATTAAGAAGATGAGGTTTGAAGTCTCATTCGTATTGAGCTTCGCTTCATT
Found at i:48903 original size:48 final size:48
Alignment explanation
Indices: 48850--48969 Score: 222
Period size: 48 Copynumber: 2.5 Consensus size: 48
48840 AATTTGGTCT
*
48850 ACTTCTCTTTATCTCATCAAGAAGATAACTGCCTTATTGATTTAATCC
1 ACTTCTCTGTATCTCATCAAGAAGATAACTGCCTTATTGATTTAATCC
*
48898 ACTTCTCTGTATCTCATCAAGAAGATGACTGCCTTATTGATTTAATCC
1 ACTTCTCTGTATCTCATCAAGAAGATAACTGCCTTATTGATTTAATCC
48946 ACTTCTCTGTATCTCATCAAGAAG
1 ACTTCTCTGTATCTCATCAAGAAG
48970 GCAGATTTGG
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 70 1.00
ACGTcount: A:0.28, C:0.23, G:0.11, T:0.38
Consensus pattern (48 bp):
ACTTCTCTGTATCTCATCAAGAAGATAACTGCCTTATTGATTTAATCC
Found at i:48990 original size:330 final size:325
Alignment explanation
Indices: 48389--49008 Score: 901
Period size: 330 Copynumber: 1.9 Consensus size: 325
48379 AAGAAGGCGA
*
48389 ATTTGGTCTACTTTTTTGTATCTCATCAGTAAGAAGACCGCTTTACTGCTTTGACCCAATTCTCT
1 ATTTGGTCTACTTTTCTGTATCTCATCAGTAAGAAGACCGCTTTACTGCTTTGACCCAATTCTCT
* *
48454 TATCTCATTTAGAAGATGGGATTTGAAGTTTCATTCGTATTGAGCTTCGCTTCATTGATTTGGTA
66 TATCTCATTTAGAAGATGGGATTTGAAGTCTCATTCGTATTGAGCTTCGCTTCATTAATTTGGTA
* *
48519 TACTTCTCTTTATCTCATCAAGAAGATGATTGCCTTATTGATTCAATCCACTTCTCTGTATCTCA
131 TACTTCTCTTTATCTCATCAAGAAGATAACTGCCTTATTGATTCAATCCACTTCTCTGTATCTCA
** *
48584 TCAAGAAGGTGAATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACCGCTTTATTGCTTTG
196 TCAAGAAGGTGAATTTAATCCACTTCTCTGTATCTCATCAAGAAGATG--CGC--TA-TGATTTG
*
48649 ACCCACTTCTCTGTATCTCATCAGGAAGATAAGGTTTGAAGTCTCATTCGTATTGAGCTTTGCTT
256 ACCCACTTCTCTGTATCTCATCAAGAAGATAAGGTTTGAAGTCTCATTCGTATTGAGCTTTGCTT
48714 CATTG
321 CATTG
* *
48719 ATTTGGTCTACTTTTCTGTATCTCATCAGTAAGATGACCGCTTTATTGCTTTGACCCAATTCTCT
1 ATTTGGTCTACTTTTCTGTATCTCATCAGTAAGAAGACCGCTTTACTGCTTTGACCCAATTCTCT
* *
48784 TATCTCATTTAGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGCTTCATTAATTTGGTC
66 TATCTCATTTAGAAGATGGGATTTGAAGTCTCATTCGTATTGAGCTTCGCTTCATTAATTTGGTA
*
48849 TACTTCTCTTTATCTCATCAAGAAGATAACTGCCTTATTGATTTAATCCACTTCTCTGTATCTCA
131 TACTTCTCTTTATCTCATCAAGAAGATAACTGCCTTATTGATTCAATCCACTTCTCTGTATCTCA
48914 TCAAGAAGATGACTGCCTTATTGATTTAATCCACTTCTCTGTATCTCATCAAG-A-A-G-GC-A-
196 TCAAGAAG--G--TG----A---ATTTAATCCACTTCTCTGTATCTCATCAAGAAGATGCGCTAT
** *
48973 GATTTGGTCCACTTCTCTGTATCTTATCAAGAAGAT
250 GATTTGACCCACTTCTCTGTATCTCATCAAGAAGAT
49009 GATCACTTTA
Statistics
Matches: 262, Mismatches: 17, Indels: 22
0.87 0.06 0.07
Matches are distributed among these distances:
330 224 0.85
332 2 0.01
334 2 0.01
335 2 0.01
338 2 0.01
339 1 0.00
340 1 0.00
341 28 0.11
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.40
Consensus pattern (325 bp):
ATTTGGTCTACTTTTCTGTATCTCATCAGTAAGAAGACCGCTTTACTGCTTTGACCCAATTCTCT
TATCTCATTTAGAAGATGGGATTTGAAGTCTCATTCGTATTGAGCTTCGCTTCATTAATTTGGTA
TACTTCTCTTTATCTCATCAAGAAGATAACTGCCTTATTGATTCAATCCACTTCTCTGTATCTCA
TCAAGAAGGTGAATTTAATCCACTTCTCTGTATCTCATCAAGAAGATGCGCTATGATTTGACCCA
CTTCTCTGTATCTCATCAAGAAGATAAGGTTTGAAGTCTCATTCGTATTGAGCTTTGCTTCATTG
Found at i:49033 original size:85 final size:85
Alignment explanation
Indices: 48895--49050 Score: 235
Period size: 85 Copynumber: 1.8 Consensus size: 85
48885 ATTGATTTAA
*
48895 TCCACTTCTCTGTATCTCATCAAGAAGATGACTGCCTTATTGATTTAATCCACTTCTCTGTATCT
1 TCCACTTCTCTGTATCTCATCAAGAAGATGACTGCCTTATTGATTTAACCCACTTCTCTGTATCT
48960 CATCAAGAAGGCAGATTTGG
66 CATCAAGAAGGCAGATTTGG
* * * *
48980 TCCACTTCTCTGTATCTTATCAAGAAGATGA-T-CACTTTATTGCTTTGACCCACTTTTCTGTAT
1 TCCACTTCTCTGTATCTCATCAAGAAGATGACTGC-C-TTATTGATTTAACCCACTTCTCTGTAT
49043 CTCATCAA
64 CTCATCAA
49051 AAAGATGAGG
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
83 1 0.02
84 2 0.03
85 61 0.95
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.38
Consensus pattern (85 bp):
TCCACTTCTCTGTATCTCATCAAGAAGATGACTGCCTTATTGATTTAACCCACTTCTCTGTATCT
CATCAAGAAGGCAGATTTGG
Found at i:49108 original size:256 final size:255
Alignment explanation
Indices: 48718--49177 Score: 674
Period size: 256 Copynumber: 1.8 Consensus size: 255
48708 TTGCTTCATT
* * *
48718 GATTTGGTCTACTTTTCTGTATCTCATCAGTAAGATGACCGCTTTATTGCTTTGACCCAATTCTC
1 GATTTGGTCCACTTCTCTGTATCTCATCAGTAAGATGACCACTTTATTGCTTTGACCCAATTCTC
** * * *
48783 TTATCTCATTTAGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGCTTCATTAATTTGGT
66 TTATCTCATCAAAAAGATGAGGTTTGAAGTCTCATTCGTATTGAGCTTCACTTCATTAATTTGGT
* ** *
48848 CTACTTCTCTTTATCTCATCAAGAAGATAA-CTGCCTTATTGATTTAATCCACTTCTCTGTATCT
131 CTACTTCTCTGTATCTCATCAAGAAGATAATC-GCCACATTAATTTAATCCACTTCTCTGTATCT
48912 CATCAAGAAGATGACTGCCTTATTGATTTAATCCACTTCTCTGTATCTCATCAAGAAGGCA
195 CATCAAGAAGATGACTGCCTTATTGATTTAATCCACTTCTCTGTATCTCATCAAGAAGGCA
* * * *
48973 GATTTGGTCCACTTCTCTGTATCTTATCAAG-AAGATGATCACTTTATTGCTTTGACCCACTTTT
1 GATTTGGTCCACTTCTCTGTATCTCATC-AGTAAGATGACCACTTTATTGCTTTGACCCAATTCT
* *
49037 CTGTATCTCATCAAAAAGATGAGGTTCT-AAGTCTCATTCGTATTGAGCTTCACTTTATTGATTT
65 CT-TATCTCATCAAAAAGATGAGGTT-TGAAGTCTCATTCGTATTGAGCTTCACTTCATTAATTT
* * *
49101 GGTCTACTTCTCTGTATCTCATCAAGAAGATGATCGCCACATTAATTTAATTCACTTTTCTGTAT
128 GGTCTACTTCTCTGTATCTCATCAAGAAGATAATCGCCACATTAATTTAATCCACTTCTCTGTAT
49166 CTCATCAAGAAG
193 CTCATCAAGAAG
49178 GCGGATATGG
Statistics
Matches: 180, Mismatches: 21, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
255 56 0.31
256 122 0.68
257 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.40
Consensus pattern (255 bp):
GATTTGGTCCACTTCTCTGTATCTCATCAGTAAGATGACCACTTTATTGCTTTGACCCAATTCTC
TTATCTCATCAAAAAGATGAGGTTTGAAGTCTCATTCGTATTGAGCTTCACTTCATTAATTTGGT
CTACTTCTCTGTATCTCATCAAGAAGATAATCGCCACATTAATTTAATCCACTTCTCTGTATCTC
ATCAAGAAGATGACTGCCTTATTGATTTAATCCACTTCTCTGTATCTCATCAAGAAGGCA
Found at i:49203 original size:160 final size:160
Alignment explanation
Indices: 49037--49367 Score: 416
Period size: 160 Copynumber: 2.1 Consensus size: 160
49027 ACCCACTTTT
*
49037 CTGTATCTCATCAAAAAGATGAGGTTCT-AAGTCTCATTCGTATTGAGCTTCACTTTATTGATTT
1 CTGTATCTCATCAAAAAGATGAGGTT-TGAAGTCTCATTCGTATTGAGCTTCACTTCATTGATTT
*
49101 GGTCTACTTCTCTGTATCTCATCAAGAAG-ATGATCGCCACATTAATTTAATTCACTT-TTCTGT
65 GGTCTACTTCTCTGTATCTCATC-AGAAGAATGATCGCCACATTAATTTAATCCACTTCTT-TGT
*
49164 ATCTCATCAAGAAGGCGGATATGGTCCACTTCA
128 ATCTCATCAAGAAGGCGAATATGGTCCACTTCA
* * * * * *
49197 CTGTATCTCTTTAAGAAGATGGGGTTTGAAGTCTCATTTGTATTGAGCTTCGCTTCATTGATTTG
1 CTGTATCTCATCAAAAAGATGAGGTTTGAAGTCTCATTCGTATTGAGCTTCACTTCATTGATTTG
* * * * * * *
49262 TTCTACTTCTTTGTATCTCATCAGGAGAATTATTGCCTCATTGATTTAATCCACTTCTTTGTATC
66 GTCTACTTCTCTGTATCTCATCAGAAGAATGATCGCCACATTAATTTAATCCACTTCTTTGTATC
* * * * *
49327 TCATTAGGAAGGCGAATTTGGTCTACTTCT
131 TCATCAAGAAGGCGAATATGGTCCACTTCA
*
49357 TTGTATCTCAT
1 CTGTATCTCAT
49368 TAGTAAGATG
Statistics
Matches: 145, Mismatches: 23, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
159 5 0.03
160 138 0.95
161 2 0.01
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.40
Consensus pattern (160 bp):
CTGTATCTCATCAAAAAGATGAGGTTTGAAGTCTCATTCGTATTGAGCTTCACTTCATTGATTTG
GTCTACTTCTCTGTATCTCATCAGAAGAATGATCGCCACATTAATTTAATCCACTTCTTTGTATC
TCATCAAGAAGGCGAATATGGTCCACTTCA
Found at i:61813 original size:29 final size:28
Alignment explanation
Indices: 61769--61941 Score: 177
Period size: 29 Copynumber: 5.9 Consensus size: 28
61759 TCGAACATCC
61769 GGGT-AAAATGGTAATTTTTGGAAGTTCG
1 GGGTAAAAATGG-AATTTTTGGAAGTTCG
* *
61797 GGGATAAAAATGAAATTTTGGGAAGTTTCG
1 GGG-TAAAAATGGAATTTTTGGAAG-TTCG
* *
61827 GGGTCAAAATGGGATTTTTGGAAGTTCG
1 GGGTAAAAATGGAATTTTTGGAAGTTCG
* *
61855 GTGGTAAAAAAGGAATTTTAGGAAGTTTCG
1 G-GGTAAAAATGGAATTTTTGGAAG-TTCG
* *
61885 AGGTCAAAAATGGGATTTTTGGAAGTTCGG
1 GGGT-AAAAATGGAATTTTTGGAAGTTC-G
**
61915 GGGTAAAAACAGAATTTTTGGATAGTT
1 GGGTAAAAATGGAATTTTTGGA-AGTT
61942 TAGGGACCTC
Statistics
Matches: 119, Mismatches: 18, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
28 8 0.07
29 69 0.58
30 42 0.35
ACGTcount: A:0.32, C:0.05, G:0.31, T:0.32
Consensus pattern (28 bp):
GGGTAAAAATGGAATTTTTGGAAGTTCG
Found at i:61844 original size:58 final size:57
Alignment explanation
Indices: 61769--61942 Score: 217
Period size: 59 Copynumber: 3.0 Consensus size: 57
61759 TCGAACATCC
* * *
61769 GGGT-AAAATGGTAATTTTTGGAAGTTCGGGGATAAAAATGAAATTTTGGGAAGTTTCG
1 GGGTCAAAATGG-GATTTTTGGAAGTTCGGGG-TAAAAAAGAAATTTTAGGAAGTTTCG
*
61827 GGGTCAAAATGGGATTTTTGGAAGTTCGGTGGTAAAAAAGGAATTTTAGGAAGTTTCG
1 GGGTCAAAATGGGATTTTTGGAAGTTCGG-GGTAAAAAAGAAATTTTAGGAAGTTTCG
* *
61885 AGGTCAAAAATGGGATTTTTGGAAGTTCGGGGGTAAAAACAG-AATTTTTGGATAGTTT
1 GGGTC-AAAATGGGATTTTTGGAAGTTC-GGGGTAAAAA-AGAAATTTTAGGA-AGTTT
61943 AGGGACCTCC
Statistics
Matches: 104, Mismatches: 6, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
58 47 0.45
59 48 0.46
60 9 0.09
ACGTcount: A:0.32, C:0.05, G:0.31, T:0.32
Consensus pattern (57 bp):
GGGTCAAAATGGGATTTTTGGAAGTTCGGGGTAAAAAAGAAATTTTAGGAAGTTTCG
Found at i:63784 original size:6 final size:6
Alignment explanation
Indices: 63773--63851 Score: 53
Period size: 6 Copynumber: 13.8 Consensus size: 6
63763 AATTGGACAT
*
63773 TTTAAA TTTAAA TTTATAA --TAAA TTTAAA TTTCAAA --TAAA GTTAAA
1 TTTAAA TTTAAA TTTA-AA TTTAAA TTTAAA TTT-AAA TTTAAA TTTAAA
* * **
63819 TTTAAA -ATAAA CTT-AA TTTAAA AATAAA TTTAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAA
63852 TTTCCAATAG
Statistics
Matches: 57, Mismatches: 8, Indels: 16
0.70 0.10 0.20
Matches are distributed among these distances:
4 5 0.09
5 11 0.19
6 36 0.63
7 5 0.09
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (6 bp):
TTTAAA
Found at i:63797 original size:17 final size:18
Alignment explanation
Indices: 63775--63851 Score: 90
Period size: 17 Copynumber: 4.5 Consensus size: 18
63765 TTGGACATTT
*
63775 TAAATTTAAATTT-ATAA
1 TAAATTTAAATTTAAAAA
*
63792 TAAATTTAAATTT-CAAA
1 TAAATTTAAATTTAAAAA
*
63809 TAAAGTTAAATTT-AAAA
1 TAAATTTAAATTTAAAAA
*
63826 TAAACTT-AATTTAAAAA
1 TAAATTTAAATTTAAAAA
63843 TAAATTTAA
1 TAAATTTAA
63852 TTTCCAATAG
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
16 5 0.10
17 46 0.88
18 1 0.02
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (18 bp):
TAAATTTAAATTTAAAAA
Found at i:63818 original size:34 final size:34
Alignment explanation
Indices: 63775--63851 Score: 102
Period size: 34 Copynumber: 2.3 Consensus size: 34
63765 TTGGACATTT
* * *
63775 TAAATTTAAATTTATAATAAATTTAAATTT-CAAA
1 TAAATTTAAATTTAAAATAAACTT-AATTTAAAAA
*
63809 TAAAGTTAAATTTAAAATAAACTTAATTTAAAAA
1 TAAATTTAAATTTAAAATAAACTTAATTTAAAAA
63843 TAAATTTAA
1 TAAATTTAA
63852 TTTCCAATAG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 5 0.14
34 32 0.86
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (34 bp):
TAAATTTAAATTTAAAATAAACTTAATTTAAAAA
Found at i:64583 original size:27 final size:27
Alignment explanation
Indices: 64545--64598 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
64535 TCACTCCTCA
64545 GTATCTCATCAGGAAGCTATCCGTTTT
1 GTATCTCATCAGGAAGCTATCCGTTTT
64572 GTATCTCATCAGGAAGCTATCCGTTTT
1 GTATCTCATCAGGAAGCTATCCGTTTT
64599 ATTACTTCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (27 bp):
GTATCTCATCAGGAAGCTATCCGTTTT
Found at i:64749 original size:234 final size:234
Alignment explanation
Indices: 64338--64805 Score: 819
Period size: 234 Copynumber: 2.0 Consensus size: 234
64328 GGTTCACTCA
*
64338 GTATCTCATCAAGAAGCTATCCGTTTTATTACTTCGACCTGCTTCTCAGTATCTCATCATGAAGC
1 GTATCTCATCAAGAAGCTATCCGTTTTATTACTTCGACCTGCTTCTCAGTATCTCATCAGGAAGC
* *
64403 TGGGGTTCGAAGATTTTGCTCACTTTGAACGTGGGTTTGATTTGGTCTTCTTCTCTGTATCTCAT
66 TAGGGTTCGAAGATTTTGCTCACTTTGAACGTGGGTTTGATTTGGTCTTCTTCTCAGTATCTCAT
* *
64468 TAGGAAGCTGACCGCGTCGTTTGTTTCAATCCGCTTCTCTGTATCTCATCAAGAAGACGAATTTG
131 CAGGAAGCTGACCGCGTCGTTTGTTTCAATCCGCTTCTCTATATCTCATCAAGAAGACGAATTTG
*
64533 GTTCACTCCTCAGTATCTCATCAGGAAGCTATCCGTTTT
196 GTTCACTCCTCAGTATCTCATCAGGAAACTATCCGTTTT
* *
64572 GTATCTCATCAGGAAGCTATCCGTTTTATTACTTCGACCTGCTTCTCAGTATCTCATTAGGAAGC
1 GTATCTCATCAAGAAGCTATCCGTTTTATTACTTCGACCTGCTTCTCAGTATCTCATCAGGAAGC
*
64637 TAGGGTTCGAAGATTTTGCTCGCTTTGAACGTGGGTTTGATTTGGTCTTCTTCTCAGTATCTCAT
66 TAGGGTTCGAAGATTTTGCTCACTTTGAACGTGGGTTTGATTTGGTCTTCTTCTCAGTATCTCAT
** *
64702 CAGGAAGCTGACCGCGTCGTTTGTTTCAATTTGCTTCTCTATATCTCATCAGGAAGACGAATTTG
131 CAGGAAGCTGACCGCGTCGTTTGTTTCAATCCGCTTCTCTATATCTCATCAAGAAGACGAATTTG
*
64767 GTTCACTCCTCAGTATCTCATCAGGAAACTATCTGTTTT
196 GTTCACTCCTCAGTATCTCATCAGGAAACTATCCGTTTT
64806 ATTACTTCGA
Statistics
Matches: 221, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
234 221 1.00
ACGTcount: A:0.21, C:0.22, G:0.19, T:0.37
Consensus pattern (234 bp):
GTATCTCATCAAGAAGCTATCCGTTTTATTACTTCGACCTGCTTCTCAGTATCTCATCAGGAAGC
TAGGGTTCGAAGATTTTGCTCACTTTGAACGTGGGTTTGATTTGGTCTTCTTCTCAGTATCTCAT
CAGGAAGCTGACCGCGTCGTTTGTTTCAATCCGCTTCTCTATATCTCATCAAGAAGACGAATTTG
GTTCACTCCTCAGTATCTCATCAGGAAACTATCCGTTTT
Done.