Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011202.1 Kokia drynarioides strain JFW-HI SEQ_126179, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 783

Length: 1305
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.36


Found at i:501 original size:14 final size:14

Alignment explanation


    Indices: 482--513  Score: 64
    Period size: 14  Copynumber: 2.3  Consensus size: 14

        472 CAACGGTGTT

                          
        482 CCTTACAAACAAAA
          1 CCTTACAAACAAAA

                          
        496 CCTTACAAACAAAA
          1 CCTTACAAACAAAA

                
        510 CCTT
          1 CCTT

        514 CATTCCCTAT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   18  1.00

ACGTcount: A:0.50, C:0.31, G:0.00, T:0.19


Consensus pattern (14 bp):   
CCTTACAAACAAAA
Done.