Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011204.1 Kokia drynarioides strain JFW-HI SEQ_126181, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6433
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.37


Found at i:4015 original size:17 final size:17

Alignment explanation


    Indices: 3995--4049  Score: 58
    Period size: 17  Copynumber: 3.2  Consensus size: 17

       3985 ATAATTGCAA

                    *        
       3995 TTTAAATTCTAATTATT
          1 TTTAAATTATAATTATT

                     *  *     
       4012 TTTAAATGTGTACTT-TT
          1 TTTAAAT-TATAATTATT

            *                
       4029 ATTAAATTATAATTATT
          1 TTTAAATTATAATTATT

                
       4046 TTTA
          1 TTTA

       4050 GATGTATGAT


Statistics
Matches: 30,  Mismatches: 6, Indels: 4
        0.75            0.15        0.10

Matches are distributed among these distances:
  16    5  0.17
  17   20  0.67
  18    5  0.17

ACGTcount: A:0.35, C:0.04, G:0.04, T:0.58


Consensus pattern (17 bp):   
TTTAAATTATAATTATT
Done.