genome.fa.s11205.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011205.1 Kokia drynarioides strain JFW-HI SEQ_126182, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127379

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2809--2870	6	10.5	6	79	10	56	27	22	0	50	1.50
6964--7015	23	2.3	22	80	3	59	44	1	9	44	1.48
11851--11905	22	2.5	22	88	5	85	50	20	0	29	1.48
11853--11893	20	2.0	20	100	0	82	51	14	0	34	1.43
12788--12833	17	2.7	17	86	10	67	30	0	0	69	0.89
13946--13985	21	1.9	21	90	10	64	27	0	2	70	1.01
14543--14581	18	2.2	18	85	0	51	41	2	7	48	1.45
15664--15714	21	2.4	21	83	6	68	7	15	31	45	1.75
16826--16925	50	2.0	50	88	0	146	23	8	25	44	1.80
18918--18960	18	2.4	18	80	7	52	46	2	0	51	1.13
19295--19361	6	11.3	6	72	15	50	47	0	1	50	1.10
19276--19354	17	4.4	17	82	7	77	44	0	3	51	1.19
19325--19371	24	2.0	24	91	4	78	55	0	0	44	0.99
21206--21338	29	4.5	30	70	15	100	34	22	3	39	1.70
21204--21341	59	2.4	57	82	8	161	34	23	2	39	1.70
21265--21429	58	2.9	56	76	13	135	34	25	4	35	1.77
27009--27079	7	9.6	7	72	22	56	78	0	18	2	0.86
27013--27053	13	3.3	13	86	6	59	80	0	19	0	0.71
27012--27077	9	7.2	9	74	12	55	80	0	16	3	0.84
27013--27082	24	3.0	23	75	10	70	77	0	20	2	0.90
28409--28655	50	4.9	50	74	11	202	40	20	24	14	1.89
28509--28675	50	3.4	48	75	7	145	40	17	26	16	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28392--28688	150	2.0	149	80	5	339	41	18	24	15	1.89
28783--28977	101	1.9	101	84	0	255	36	15	16	31	1.90
29044--29175	39	3.4	38	72	16	101	24	29	18	28	1.98
29063--29226	77	2.1	78	82	1	195	25	30	19	25	1.98
29247--29830	194	3.0	192	84	5	710	35	16	23	23	1.95
30186--30225	17	2.4	17	86	0	53	42	0	5	52	1.23
30204--30271	25	2.9	22	72	18	57	44	1	4	50	1.31
30229--30284	18	3.2	19	78	12	57	46	3	3	46	1.37
32111--32215	29	3.6	28	76	12	97	36	27	0	35	1.64
32111--32209	30	3.3	29	79	12	87	34	27	1	37	1.64
32186--32318	58	2.3	58	80	5	144	32	27	4	36	1.77
32301--32359	28	2.1	28	83	0	73	30	23	11	33	1.91
36643--36729	23	3.7	23	78	4	86	29	13	17	39	1.88
36696--36741	23	2.0	23	83	8	58	41	10	15	32	1.82
38373--38399	9	3.0	9	100	0	54	55	0	0	44	0.99
39664--39736	35	2.1	35	100	0	146	41	2	41	15	1.61
42336--42380	11	4.0	11	80	5	54	37	4	2	55	1.32
42337--42386	23	2.2	23	88	0	73	40	4	2	54	1.31
43123--43158	3	12.0	3	87	0	54	61	0	2	36	1.11
44016--44388	30	12.5	30	72	16	219	33	25	4	35	1.77
44038--44326	59	4.8	58	80	8	280	34	26	3	35	1.74
44220--44398	59	3.0	59	83	6	220	30	25	6	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44224--44418	59	3.3	60	82	2	214	31	23	6	38	1.81
44220--44445	59	3.8	60	82	5	194	30	23	7	39	1.82
50956--51052	28	3.5	28	84	9	137	52	6	11	29	1.61
60065--60134	18	4.0	17	71	12	52	54	0	1	44	1.09
60124--60156	2	16.5	2	93	0	57	48	3	0	48	1.17
60640--60681	21	2.0	21	85	0	57	28	21	19	30	1.97
62044--62673	313	2.0	313	99	0	1242	36	19	14	29	1.92
66152--66510	175	2.1	175	95	0	637	35	16	9	38	1.82
71257--71283	13	2.1	13	100	0	54	29	7	29	33	1.85
77360--77760	201	2.0	201	94	0	694	31	15	18	33	1.93
79375--79459	31	2.8	29	74	11	82	32	11	14	41	1.82
80861--80908	21	2.3	20	79	10	51	64	14	14	6	1.47
93127--93184	6	10.0	6	76	14	59	44	1	3	50	1.29
93117--93176	17	3.6	16	78	10	66	40	1	3	55	1.27
93120--93183	11	5.6	11	73	14	58	43	1	3	51	1.26
93129--93201	34	2.2	33	80	9	76	49	4	4	42	1.41
94948--95173	29	7.7	29	78	10	210	33	26	3	36	1.75
94947--95193	59	4.2	58	84	4	298	34	26	4	34	1.77
104582--104621	21	1.9	21	89	0	62	10	2	7	80	1.00
104592--104644	11	4.9	11	79	4	54	11	5	5	77	1.11
107670--107727	23	2.5	23	88	2	80	13	22	17	46	1.83
107683--107811	22	5.8	22	86	2	143	13	23	23	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114760--114813	23	2.3	23	90	0	81	9	25	20	44	1.81
114779--114881	23	4.5	22	78	6	98	12	20	27	39	1.88
114779--114881	45	2.3	46	77	11	113	12	20	27	39	1.88
116394--117057	206	3.2	204	88	1	943	35	20	22	21	1.96
117382--117445	6	11.0	6	75	12	62	45	1	1	51	1.20
117375--117445	17	4.1	17	85	1	97	45	1	1	52	1.18
118141--118210	31	2.3	31	82	7	88	52	4	4	38	1.41
118193--118227	3	11.3	3	87	6	52	62	0	0	37	0.95
119184--119468	29	9.8	29	76	14	250	32	29	4	34	1.77
119182--119496	58	5.4	58	79	9	295	33	28	4	33	1.76
119575--119643	32	2.2	32	97	0	129	27	10	8	53	1.64
125127--125164	20	1.9	20	88	0	58	23	0	7	68	1.16

Tables:   1

The End!